--- MITgcm_contrib/ocean_inversion_project/README	2004/11/01 20:03:35	1.25
+++ MITgcm_contrib/ocean_inversion_project/README	2004/11/22 23:47:01	1.28
@@ -13,6 +13,17 @@
 respective README files in each directory for details.
 
 
+Notes and problems:
+===================
+
+there is problem generating ECCO_MaskAreaBathy.nc on columbia
+works OK on nireas
+
+variable global_mean_conc in 0D output from mk_output.F is
+screwed up
+
+
+
 ===============================================
 First check that pkg/ptracers works OK by using
 salinity initial and boundary conditions
@@ -168,7 +179,7 @@
 This assumes that the appropriate libnetcdf.a exists
 and that it be specified in the genmake2 option file.
 It also assumes that surface forcing files are available
-in /nobackup2/menemenl/ocmip/iter69
+in MITgcm/../iter69
 ==========================================================
 
  cd MITgcm/exe
@@ -192,6 +203,36 @@
 
 
 ==========================================================
+Instructions for carrying out 3000-year quasi-stationary
+integration using the ecco1x1 configuration and netcdf
+output on columbia.
+This assumes that the appropriate libnetcdf.a exists
+and that it be specified in the genmake2 option file.
+It also assumes that surface forcing files are available
+in MITgcm/../iter69
+==========================================================
+
+ cd MITgcm/exe
+ \rm *
+ cd ../bin
+ \rm *
+ \cp ../ocean_inversion_project/code_ecco1x1/* .
+ \cp ../ocean_inversion_project/write_netCDF/*  .
+ \rm mk_output.F
+ \cp SIZE.h.96 SIZE.h
+ \cp PTRACERS_OPTIONS.h.stationary PTRACERS_OPTIONS.h
+ ../tools/genmake2 -of linux_ia64_efc+mpi_altix
+ make depend
+ make -j 16
+ cd ../exe
+ \cp ../ocean_inversion_project/input_ecco1x1/* .
+ \ln -sf ../../iter69/* .
+ \ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
+ \ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
+ qsub job01s
+
+
+==========================================================
 Instructions for generating netcdf output files on columbia
 ==========================================================
 
@@ -205,7 +246,7 @@
      write_nc_diag_0D.F write_nc_diag_2D.F \
      -I/u/menemenl/software/netcdf-3.5.0/include \
      -L/u/menemenl/software/netcdf-3.5.0/lib -lnetcdf
-a.out
+./a.out
 
 
 ==========================================================
@@ -222,7 +263,7 @@
      write_nc_diag_0D.F write_nc_diag_2D.F \
      -I/u2/dmenem/software/netcdf-3.5.0/include \
      -L/u2/dmenem/software/netcdf-3.5.0/lib -lnetcdf
-a.out
+./a.out
 
 
 ======================================================