--- MITgcm_contrib/ocean_inversion_project/README 2003/10/28 00:27:48 1.14 +++ MITgcm_contrib/ocean_inversion_project/README 2004/11/01 20:03:35 1.25 @@ -20,9 +20,9 @@ 1 ===> get MITgcm code from cvs repository - CVSROOT=:pserver:cvsanon@mitgcm.org:/u/u0/gcmpack - cvs login ( CVS password: cvsanon ) - cvs co -P MITgcm + cvs co -r checkpoint51n_branch MITgcm_code + cvs co -r checkpoint51n_branch MITgcm/verification/testreport + cvs co -r checkpoint51n_branch MITgcm/verification/global_with_exf 2 ===> put MITgcm_contrib/ocean_inversion_project in MITgcm directory @@ -31,27 +31,29 @@ 3 ===> compile and link + mkdir bin exe cd bin - cp ../verification/global_with_exf/code/* . - cp ../ocean_inversion_project/code/* . - rm ptracers_*.F PTRACERS_OPTIONS.h + \cp ../verification/global_with_exf/code/* . + \cp ../ocean_inversion_project/code/* . + \rm ptracers_*.F PTRACERS_OPTIONS.h ../tools/genmake2 - (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi) + (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi ) + (on columbia: ../tools/genmake2 -of linux_ia64_efc+mpi_altix ) make depend - make + make -j 16 4 ===> execute cd ../exe - cp ../verification/global_with_exf/input/eedata . - cp ../verification/global_with_exf/input/data.* . - cp ../verification/global_with_exf/input/POLY3.COEFFS . - ln -sf ../verification/global_with_exf/input/*.bin . - cp ../ocean_inversion_project/input/* . - cp data.test data - cp data.ptracers.test data.ptracers - mitgcmuv > output.txt - + \cp ../verification/global_with_exf/input/eedata . + \cp ../verification/global_with_exf/input/data.* . + \cp ../verification/global_with_exf/input/POLY3.COEFFS . + \ln -sf ../verification/global_with_exf/input/*.bin . + \cp ../ocean_inversion_project/input/* . + \cp data.test data + \cp data.ptracers.test data.ptracers + ./mitgcmuv >! output.txt + 5 ===> check that PTRACER output and salinity output are identical. diff PTRACER01.0000000020.001.001.data S.0000000020.001.001.data @@ -86,11 +88,13 @@ cp ../ocean_inversion_project/input/* . ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin . ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin . - mpirun -np 24 dplace -s1 -c3-38 mitgcmuv < /dev/null > & ! errlog & + cp data.stationary.1 data + mpirun -np 24 dplace -s1 mitgcmuv < /dev/null > & ! errlog & + (on orion: qsub job.orion) ========================================================== -Instructions for carrying out time-dependent, 1765-2005, +MPI instructions for carrying out time-dependent, 1765-2005, anthropogenic carbon perturbation tracer experiments using the global_ocean.90x40x15 configuration. ========================================================== @@ -101,6 +105,8 @@ rm * cp ../verification/global_with_exf/code/* . cp ../ocean_inversion_project/code/* . + cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h + cp SIZE.h_mpi SIZE.h ../tools/genmake2 (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi) make depend @@ -115,7 +121,8 @@ ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin . ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin . ln -sf ../ocean_inversion_project/atm_co2/splco2_cis92a.dat . - mitgcmuv > output .txt & + mpirun -np 24 dplace -s1 mitgcmuv < /dev/null > & ! errlog & + (on orion: qsub job.orion.td) ========================================================== @@ -134,6 +141,7 @@ cp ../ocean_inversion_project/code/* . cp PTRACERS_OPTIONS.h.netcdf PTRACERS_OPTIONS.h cp ../ocean_inversion_project/write_netCDF/* . + \rm mk_output.F ### need customized option file; example below is for nireas ../tools/genmake2 -of linux_ia32_g77_netcdf @@ -146,13 +154,77 @@ cp ../verification/global_with_exf/input/POLY3.COEFFS . ln -sf ../verification/global_with_exf/input/*.bin . cp ../ocean_inversion_project/input/* . - cp data.1765-2005 data + cp data.1765-2005.1 data ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin . ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin . ln -sf ../ocean_inversion_project/atm_co2/splco2_cis92a.dat . mitgcmuv > output .txt & +========================================================== +Instructions for carrying out time-dependent, 1765-2005, +anthropogenic carbon perturbation tracer experiments using +the ecco1x1 configuration and netcdf output on columbia. +This assumes that the appropriate libnetcdf.a exists +and that it be specified in the genmake2 option file. +It also assumes that surface forcing files are available +in /nobackup2/menemenl/ocmip/iter69 +========================================================== + + cd MITgcm/exe + \rm * + cd ../bin + \rm * + \cp ../ocean_inversion_project/code_ecco1x1/* . + \cp ../ocean_inversion_project/write_netCDF/* . + \rm mk_output.F + \cp SIZE.h.96 SIZE.h + ../tools/genmake2 -of linux_ia64_efc+mpi_altix + make depend + make -j 16 + cd ../exe + \cp ../ocean_inversion_project/input_ecco1x1/* . + ln -sf ../../iter69/* . + ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin . + ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin . + ln -sf ../ocean_inversion_project/atm_co2/splco2_cis92a.dat . + qsub job01 + + +========================================================== +Instructions for generating netcdf output files on columbia +========================================================== + +cd ocean_inversion_project/write_netCDF +setenv F_UFMTENDIAN big + +(check that defaults in mk_output.F are appropriate) + +efc -W0 -WB mk_output.F write_nc_phys.F nc_util.F \ + handle_errors.F write_nc_basisfnctns.F \ + write_nc_diag_0D.F write_nc_diag_2D.F \ + -I/u/menemenl/software/netcdf-3.5.0/include \ + -L/u/menemenl/software/netcdf-3.5.0/lib -lnetcdf +a.out + + +========================================================== +Instructions for generating netcdf output files on orion +========================================================== + +cd ocean_inversion_project/write_netCDF +setenv F_UFMTENDIAN big + +(check that defaults in mk_output.F are appropriate) + +efc -W0 -WB mk_output.F write_nc_phys.F nc_util.F \ + handle_errors.F write_nc_basisfnctns.F \ + write_nc_diag_0D.F write_nc_diag_2D.F \ + -I/u2/dmenem/software/netcdf-3.5.0/include \ + -L/u2/dmenem/software/netcdf-3.5.0/lib -lnetcdf +a.out + + ====================================================== % some matlab code for looking at fort.10 debug files @@ -195,3 +267,19 @@ end end plot(1:30,0*sumtracer,1:30,sumtracer) + + +% check that tracer flux is 1e18 mols / year +nb_seconds_per_year=31556880; +lon=2:4:360; lat=-78:4:78; +mask=readbin('hFacC.data',[90 40 15],1); +tracer=zeros(90,40,30); sumtracer=zeros(30,1); +for i=1:30, mydisp(i) + fn=['PtrFlux' myint2str(i) '.0000000180.data']; + tracer(:,:,i)=readbin(fn,[90 40],1); + for j=1:length(lat) + sumtracer(i) = sumtracer(i) + sum(tracer(:,j,i).*mask(:,j,1)) * ... + nb_seconds_per_year* (4*1.113195e+05)^2 * cos(pi*lat(j)/180); + end +end +plot(1:30,0*sumtracer,1:30,sumtracer-mmean(sumtracer))