--- MITgcm_contrib/ocean_inversion_project/README 2003/09/27 07:45:51 1.8 +++ MITgcm_contrib/ocean_inversion_project/README 2003/12/18 03:17:56 1.19 @@ -22,7 +22,7 @@ CVSROOT=:pserver:cvsanon@mitgcm.org:/u/u0/gcmpack cvs login ( CVS password: cvsanon ) - cvs co MITgcm + cvs co -r checkpoint51n_branch MITgcm 2 ===> put MITgcm_contrib/ocean_inversion_project in MITgcm directory @@ -33,10 +33,10 @@ cd bin cp ../verification/global_with_exf/code/* . - cp ../ocean_inversion_project/code/.genmakerc . cp ../ocean_inversion_project/code/* . - rm ptracers_*.F - ../tools/genmake + rm ptracers_*.F PTRACERS_OPTIONS.h + ../tools/genmake2 + (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi) make depend make @@ -56,23 +56,26 @@ diff PTRACER01.0000000020.001.001.data S.0000000020.001.001.data diff PTRACER30.0000000020.001.001.data S.0000000020.001.001.data + diff PTRtave30.0000000020.001.001.data Stave.0000000020.001.001.data + diff PTRtave30.0000000020.001.001.data Stave.0000000020.001.001.data ========================================================== -Instructions for carrying out a 3000-year quasi-stationary +MPI instructions for carrying out a 3000-year quasi-stationary integration using the global_ocean.90x40x15 configuration. ========================================================== -1 ===> compile, link, and execute - cd MITgcm/exe rm * cd ../bin rm * cp ../verification/global_with_exf/code/* . - cp ../ocean_inversion_project/code/.genmakerc . cp ../ocean_inversion_project/code/* . - ../tools/genmake + rm PTRACERS_OPTIONS.h + cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h + cp SIZE.h_mpi SIZE.h + ../tools/genmake2 + (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi) make depend make cd ../exe @@ -83,26 +86,62 @@ cp ../ocean_inversion_project/input/* . ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin . ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin . - mitgcmuv > output .txt & - + cp data.stationary.1 data + mpirun -np 24 dplace -s1 mitgcmuv < /dev/null > & ! errlog & + (on orion: qsub job.orion) ========================================================== -MPI instructions for carrying out a 3000-year quasi-stationary -integration using the global_ocean.90x40x15 configuration. +MPI instructions for carrying out time-dependent, 1765-2005, +anthropogenic carbon perturbation tracer experiments using +the global_ocean.90x40x15 configuration. ========================================================== -1 ===> compile, link, and execute - cd MITgcm/exe rm * cd ../bin rm * cp ../verification/global_with_exf/code/* . - cp ../ocean_inversion_project/code/.genmakerc . cp ../ocean_inversion_project/code/* . cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h cp SIZE.h_mpi SIZE.h - ../tools/genmake + ../tools/genmake2 + (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi) + make depend + make + cd ../exe + cp ../verification/global_with_exf/input/eedata . + cp ../verification/global_with_exf/input/data.* . + cp ../verification/global_with_exf/input/POLY3.COEFFS . + ln -sf ../verification/global_with_exf/input/*.bin . + cp ../ocean_inversion_project/input/* . + cp data.1765-2005 data + ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin . + ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin . + ln -sf ../ocean_inversion_project/atm_co2/splco2_cis92a.dat . + mpirun -np 24 dplace -s1 mitgcmuv < /dev/null > & ! errlog & + (on orion: qsub job.orion.td) + + +========================================================== +Instructions for carrying out time-dependent, 1765-2005, +anthropogenic carbon perturbation tracer experiments using +global_ocean.90x40x15 configuration and netcdf output. +This assumes that the appropriate libnetcdf.a exists +and that it be specified in the genmake2 option file. +========================================================== + + cd MITgcm/exe + rm * + cd ../bin + rm * + cp ../verification/global_with_exf/code/* . + cp ../ocean_inversion_project/code/* . + cp PTRACERS_OPTIONS.h.netcdf PTRACERS_OPTIONS.h + cp ../ocean_inversion_project/write_netCDF/* . + +### need customized option file; example below is for nireas + ../tools/genmake2 -of linux_ia32_g77_netcdf + make depend make cd ../exe @@ -111,9 +150,30 @@ cp ../verification/global_with_exf/input/POLY3.COEFFS . ln -sf ../verification/global_with_exf/input/*.bin . cp ../ocean_inversion_project/input/* . + cp data.1765-2005.1 data ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin . ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin . - mpirun -np 36 dplace -s1 -c25-60 mitgcmuv < /dev/null > & ! errlog & + ln -sf ../ocean_inversion_project/atm_co2/splco2_cis92a.dat . + mitgcmuv > output .txt & + + +====================================================== + +========================================================== +Instructions for generating netcdf output files on orion +========================================================== + +cd ocean_inversion_project/write_netCDF +setenv F_UFMTENDIAN big + +(check that defaults in mk_output.F are appropriate) + +efc -W0 -WB mk_output.F write_nc_phys.F nc_util.F \ + handle_errors.F write_nc_basisfnctns.F \ + write_nc_diag_0D.F write_nc_diag_2D.F \ + -I/u2/dmenem/software/netcdf-3.5.0/include \ + -L/u2/dmenem/software/netcdf-3.5.0/lib -lnetcdf +a.out ======================================================