/[MITgcm]/MITgcm_contrib/ocean_inversion_project/README
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revision 1.19 by dimitri, Thu Dec 18 03:17:56 2003 UTC revision 1.22 by dimitri, Wed Oct 6 20:26:54 2004 UTC
# Line 20  salinity initial and boundary conditions Line 20  salinity initial and boundary conditions
20    
21  1 ===> get MITgcm code from cvs repository  1 ===> get MITgcm code from cvs repository
22    
23   CVSROOT=:pserver:cvsanon@mitgcm.org:/u/u0/gcmpack   cvs co -r checkpoint51n_branch MITgcm_code
24   cvs login ( CVS password: cvsanon )   cvs co -r checkpoint51n_branch MITgcm/verification/testreport
25   cvs co -r checkpoint51n_branch MITgcm   cvs co -r checkpoint51n_branch MITgcm/verification/global_with_exf
26    
27  2 ===> put MITgcm_contrib/ocean_inversion_project in MITgcm directory  2 ===> put MITgcm_contrib/ocean_inversion_project in MITgcm directory
28    
# Line 31  salinity initial and boundary conditions Line 31  salinity initial and boundary conditions
31    
32  3 ===> compile and link  3 ===> compile and link
33    
34     mkdir bin exe
35   cd bin   cd bin
36   cp ../verification/global_with_exf/code/* .   \cp ../verification/global_with_exf/code/* .
37   cp ../ocean_inversion_project/code/* .   \cp ../ocean_inversion_project/code/* .
38   rm ptracers_*.F PTRACERS_OPTIONS.h   \rm ptracers_*.F PTRACERS_OPTIONS.h
39   ../tools/genmake2   ../tools/genmake2
40     (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi)     (on orion:    ../tools/genmake2 -of linux_ia64_efc+mpi       )
41       (on columbia: ../tools/genmake2 -of linux_ia64_efc+mpi_altix )
42   make depend   make depend
43   make   make -j 16
44    
45  4 ===> execute  4 ===> execute
46    
47   cd ../exe   cd ../exe
48   cp ../verification/global_with_exf/input/eedata .   \cp ../verification/global_with_exf/input/eedata .
49   cp ../verification/global_with_exf/input/data.* .   \cp ../verification/global_with_exf/input/data.* .
50   cp ../verification/global_with_exf/input/POLY3.COEFFS .   \cp ../verification/global_with_exf/input/POLY3.COEFFS .
51   ln -sf ../verification/global_with_exf/input/*.bin .   \ln -sf ../verification/global_with_exf/input/*.bin .
52   cp ../ocean_inversion_project/input/* .   \cp ../ocean_inversion_project/input/* .
53   cp data.test data   \cp data.test data
54   cp data.ptracers.test data.ptracers   \cp data.ptracers.test data.ptracers
55   mitgcmuv > output.txt   ./mitgcmuv >! output.txt
56      
57  5 ===> check that PTRACER output and salinity output are identical.  5 ===> check that PTRACER output and salinity output are identical.
58    
59   diff PTRACER01.0000000020.001.001.data S.0000000020.001.001.data   diff PTRACER01.0000000020.001.001.data S.0000000020.001.001.data
# Line 90  integration using the global_ocean.90x40 Line 92  integration using the global_ocean.90x40
92   mpirun -np 24 dplace -s1 mitgcmuv < /dev/null > & ! errlog &   mpirun -np 24 dplace -s1 mitgcmuv < /dev/null > & ! errlog &
93     (on orion: qsub job.orion)     (on orion: qsub job.orion)
94    
95    
96  ==========================================================  ==========================================================
97  MPI instructions for carrying out time-dependent, 1765-2005,  MPI instructions for carrying out time-dependent, 1765-2005,
98  anthropogenic carbon perturbation tracer experiments using  anthropogenic carbon perturbation tracer experiments using
# Line 138  and that it be specified in the genmake2 Line 141  and that it be specified in the genmake2
141   cp ../ocean_inversion_project/code/* .   cp ../ocean_inversion_project/code/* .
142   cp PTRACERS_OPTIONS.h.netcdf PTRACERS_OPTIONS.h   cp PTRACERS_OPTIONS.h.netcdf PTRACERS_OPTIONS.h
143   cp ../ocean_inversion_project/write_netCDF/*  .   cp ../ocean_inversion_project/write_netCDF/*  .
144     \rm mk_output.F
145    
146  ### need customized option file; example below is for nireas  ### need customized option file; example below is for nireas
147   ../tools/genmake2 -of linux_ia32_g77_netcdf   ../tools/genmake2 -of linux_ia32_g77_netcdf
# Line 157  and that it be specified in the genmake2 Line 161  and that it be specified in the genmake2
161   mitgcmuv > output .txt &   mitgcmuv > output .txt &
162    
163    
164  ======================================================  ==========================================================
165    Instructions for carrying out time-dependent, 1765-2005,
166    anthropogenic carbon perturbation tracer experiments using
167    the ecco1x1 configuration and netcdf output on columbia.
168    This assumes that the appropriate libnetcdf.a exists
169    and that it be specified in the genmake2 option file.
170    It also assumes that surface forcing files are available
171    in /nobackup2/menemenl/ocmip/iter69
172    ==========================================================
173    
174     cd MITgcm/exe
175     \rm *
176     cd ../bin
177     \rm *
178     \cp ../ocean_inversion_project/code_ecco1x1/* .
179     \cp ../ocean_inversion_project/write_netCDF/*  .
180     \rm mk_output.F
181     \cp SIZE.h.144 SIZE.h
182     ../tools/genmake2 -of linux_ia64_efc+mpi_altix
183     make depend
184     make -j 16
185     cd ../exe
186     \cp ../ocean_inversion_project/input_ecco1x1/* .
187     ln -sf /nobackup2/menemenl/ocmip/iter69/* .
188     ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
189     ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
190     ln -sf ../ocean_inversion_project/atm_co2/splco2_cis92a.dat .
191     qsub job01
192    
193    
194  ==========================================================  ==========================================================
195  Instructions for generating netcdf output files on orion  Instructions for generating netcdf output files on orion
# Line 218  for i=1:30, mydisp(i) Line 250  for i=1:30, mydisp(i)
250   end   end
251  end  end
252  plot(1:30,0*sumtracer,1:30,sumtracer)  plot(1:30,0*sumtracer,1:30,sumtracer)
253    
254    
255    % check that tracer flux is 1e18 mols / year
256    nb_seconds_per_year=31556880;
257    lon=2:4:360; lat=-78:4:78;
258    mask=readbin('hFacC.data',[90 40 15],1);
259    tracer=zeros(90,40,30); sumtracer=zeros(30,1);
260    for i=1:30, mydisp(i)
261     fn=['PtrFlux' myint2str(i) '.0000000180.data'];
262     tracer(:,:,i)=readbin(fn,[90 40],1);
263     for j=1:length(lat)
264        sumtracer(i) = sumtracer(i) + sum(tracer(:,j,i).*mask(:,j,1)) * ...
265            nb_seconds_per_year* (4*1.113195e+05)^2 * cos(pi*lat(j)/180);
266      end
267    end
268    plot(1:30,0*sumtracer,1:30,sumtracer-mmean(sumtracer))
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