/[MITgcm]/MITgcm_contrib/ocean_inversion_project/README
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revision 1.15 by dimitri, Tue Oct 28 00:35:54 2003 UTC revision 1.19 by dimitri, Thu Dec 18 03:17:56 2003 UTC
# Line 22  salinity initial and boundary conditions Line 22  salinity initial and boundary conditions
22    
23   CVSROOT=:pserver:cvsanon@mitgcm.org:/u/u0/gcmpack   CVSROOT=:pserver:cvsanon@mitgcm.org:/u/u0/gcmpack
24   cvs login ( CVS password: cvsanon )   cvs login ( CVS password: cvsanon )
25   cvs co -P MITgcm -r checkpoint51n_branch   cvs co -r checkpoint51n_branch MITgcm
26    
27  2 ===> put MITgcm_contrib/ocean_inversion_project in MITgcm directory  2 ===> put MITgcm_contrib/ocean_inversion_project in MITgcm directory
28    
# Line 86  integration using the global_ocean.90x40 Line 86  integration using the global_ocean.90x40
86   cp ../ocean_inversion_project/input/* .   cp ../ocean_inversion_project/input/* .
87   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
88   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
89   mpirun -np 24 dplace -s1 -c3-38 mitgcmuv < /dev/null > & ! errlog &   cp data.stationary.1 data
90     mpirun -np 24 dplace -s1 mitgcmuv < /dev/null > & ! errlog &
91       (on orion: qsub job.orion)
92    
93  ==========================================================  ==========================================================
94  Instructions for carrying out time-dependent, 1765-2005,  MPI instructions for carrying out time-dependent, 1765-2005,
95  anthropogenic carbon perturbation tracer experiments using  anthropogenic carbon perturbation tracer experiments using
96  the global_ocean.90x40x15 configuration.  the global_ocean.90x40x15 configuration.
97  ==========================================================  ==========================================================
# Line 101  the global_ocean.90x40x15 configuration. Line 102  the global_ocean.90x40x15 configuration.
102   rm *   rm *
103   cp ../verification/global_with_exf/code/* .   cp ../verification/global_with_exf/code/* .
104   cp ../ocean_inversion_project/code/* .   cp ../ocean_inversion_project/code/* .
105     cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
106     cp SIZE.h_mpi SIZE.h
107   ../tools/genmake2   ../tools/genmake2
108     (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi)     (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi)
109   make depend   make depend
# Line 115  the global_ocean.90x40x15 configuration. Line 118  the global_ocean.90x40x15 configuration.
118   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
119   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
120   ln -sf ../ocean_inversion_project/atm_co2/splco2_cis92a.dat .   ln -sf ../ocean_inversion_project/atm_co2/splco2_cis92a.dat .
121   mitgcmuv > output .txt &   mpirun -np 24 dplace -s1 mitgcmuv < /dev/null > & ! errlog &
122       (on orion: qsub job.orion.td)
123    
124    
125  ==========================================================  ==========================================================
# Line 146  and that it be specified in the genmake2 Line 150  and that it be specified in the genmake2
150   cp ../verification/global_with_exf/input/POLY3.COEFFS .   cp ../verification/global_with_exf/input/POLY3.COEFFS .
151   ln -sf ../verification/global_with_exf/input/*.bin .   ln -sf ../verification/global_with_exf/input/*.bin .
152   cp ../ocean_inversion_project/input/* .   cp ../ocean_inversion_project/input/* .
153   cp data.1765-2005 data   cp data.1765-2005.1 data
154   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
155   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
156   ln -sf ../ocean_inversion_project/atm_co2/splco2_cis92a.dat .   ln -sf ../ocean_inversion_project/atm_co2/splco2_cis92a.dat .
# Line 154  and that it be specified in the genmake2 Line 158  and that it be specified in the genmake2
158    
159    
160  ======================================================  ======================================================
161    
162    ==========================================================
163    Instructions for generating netcdf output files on orion
164    ==========================================================
165    
166    cd ocean_inversion_project/write_netCDF
167    setenv F_UFMTENDIAN big
168    
169    (check that defaults in  mk_output.F are appropriate)
170    
171    efc -W0 -WB mk_output.F write_nc_phys.F nc_util.F \
172         handle_errors.F write_nc_basisfnctns.F \
173         write_nc_diag_0D.F write_nc_diag_2D.F \
174         -I/u2/dmenem/software/netcdf-3.5.0/include \
175         -L/u2/dmenem/software/netcdf-3.5.0/lib -lnetcdf
176    a.out
177    
178    
179    ======================================================
180    
181  % some matlab code for looking at fort.10 debug files  % some matlab code for looking at fort.10 debug files
182  load fort.10  load fort.10
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