/[MITgcm]/MITgcm_contrib/ocean_inversion_project/README
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revision 1.13 by dimitri, Tue Oct 21 06:21:51 2003 UTC revision 1.19 by dimitri, Thu Dec 18 03:17:56 2003 UTC
# Line 22  salinity initial and boundary conditions Line 22  salinity initial and boundary conditions
22    
23   CVSROOT=:pserver:cvsanon@mitgcm.org:/u/u0/gcmpack   CVSROOT=:pserver:cvsanon@mitgcm.org:/u/u0/gcmpack
24   cvs login ( CVS password: cvsanon )   cvs login ( CVS password: cvsanon )
25   cvs co -P MITgcm   cvs co -r checkpoint51n_branch MITgcm
26    
27  2 ===> put MITgcm_contrib/ocean_inversion_project in MITgcm directory  2 ===> put MITgcm_contrib/ocean_inversion_project in MITgcm directory
28    
# Line 56  salinity initial and boundary conditions Line 56  salinity initial and boundary conditions
56    
57   diff PTRACER01.0000000020.001.001.data S.0000000020.001.001.data   diff PTRACER01.0000000020.001.001.data S.0000000020.001.001.data
58   diff PTRACER30.0000000020.001.001.data S.0000000020.001.001.data   diff PTRACER30.0000000020.001.001.data S.0000000020.001.001.data
59     diff PTRtave30.0000000020.001.001.data Stave.0000000020.001.001.data
60     diff PTRtave30.0000000020.001.001.data Stave.0000000020.001.001.data
 ==========================================================  
 Instructions for carrying out a 3000-year quasi-stationary  
 integration using the global_ocean.90x40x15 configuration.  
 ==========================================================  
   
  cd MITgcm/exe  
  rm *  
  cd ../bin  
  rm *  
  cp ../verification/global_with_exf/code/* .  
  cp ../ocean_inversion_project/code/* .  
  rm PTRACERS_OPTIONS.h  
  ../tools/genmake2  
    (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi)  
  make depend  
  make  
  cd ../exe  
  cp ../verification/global_with_exf/input/eedata .  
  cp ../verification/global_with_exf/input/data.* .  
  cp ../verification/global_with_exf/input/POLY3.COEFFS .  
  ln -sf ../verification/global_with_exf/input/*.bin .  
  cp ../ocean_inversion_project/input/* .  
  ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .  
  ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .  
  mitgcmuv > output .txt &  
61    
62    
63  ==========================================================  ==========================================================
# Line 111  integration using the global_ocean.90x40 Line 86  integration using the global_ocean.90x40
86   cp ../ocean_inversion_project/input/* .   cp ../ocean_inversion_project/input/* .
87   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
88   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
89   mpirun -np 36 dplace -s1 -c3-38 mitgcmuv < /dev/null > & ! errlog &   cp data.stationary.1 data
90     mpirun -np 24 dplace -s1 mitgcmuv < /dev/null > & ! errlog &
91       (on orion: qsub job.orion)
92    
93  ==========================================================  ==========================================================
94  Instructions for carrying out time-dependent, 1765-2005,  MPI instructions for carrying out time-dependent, 1765-2005,
95  anthropogenic carbon perturbation tracer experiments using  anthropogenic carbon perturbation tracer experiments using
96  the global_ocean.90x40x15 configuration.  the global_ocean.90x40x15 configuration.
97  ==========================================================  ==========================================================
# Line 126  the global_ocean.90x40x15 configuration. Line 102  the global_ocean.90x40x15 configuration.
102   rm *   rm *
103   cp ../verification/global_with_exf/code/* .   cp ../verification/global_with_exf/code/* .
104   cp ../ocean_inversion_project/code/* .   cp ../ocean_inversion_project/code/* .
105     cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
106     cp SIZE.h_mpi SIZE.h
107   ../tools/genmake2   ../tools/genmake2
108     (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi)     (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi)
109   make depend   make depend
# Line 140  the global_ocean.90x40x15 configuration. Line 118  the global_ocean.90x40x15 configuration.
118   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
119   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
120   ln -sf ../ocean_inversion_project/atm_co2/splco2_cis92a.dat .   ln -sf ../ocean_inversion_project/atm_co2/splco2_cis92a.dat .
121   mitgcmuv > output .txt &   mpirun -np 24 dplace -s1 mitgcmuv < /dev/null > & ! errlog &
122       (on orion: qsub job.orion.td)
123    
124    
125  ==========================================================  ==========================================================
# Line 171  and that it be specified in the genmake2 Line 150  and that it be specified in the genmake2
150   cp ../verification/global_with_exf/input/POLY3.COEFFS .   cp ../verification/global_with_exf/input/POLY3.COEFFS .
151   ln -sf ../verification/global_with_exf/input/*.bin .   ln -sf ../verification/global_with_exf/input/*.bin .
152   cp ../ocean_inversion_project/input/* .   cp ../ocean_inversion_project/input/* .
153   cp data.1765-2005 data   cp data.1765-2005.1 data
154   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
155   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
156   ln -sf ../ocean_inversion_project/atm_co2/splco2_cis92a.dat .   ln -sf ../ocean_inversion_project/atm_co2/splco2_cis92a.dat .
# Line 179  and that it be specified in the genmake2 Line 158  and that it be specified in the genmake2
158    
159    
160  ======================================================  ======================================================
161    
162    ==========================================================
163    Instructions for generating netcdf output files on orion
164    ==========================================================
165    
166    cd ocean_inversion_project/write_netCDF
167    setenv F_UFMTENDIAN big
168    
169    (check that defaults in  mk_output.F are appropriate)
170    
171    efc -W0 -WB mk_output.F write_nc_phys.F nc_util.F \
172         handle_errors.F write_nc_basisfnctns.F \
173         write_nc_diag_0D.F write_nc_diag_2D.F \
174         -I/u2/dmenem/software/netcdf-3.5.0/include \
175         -L/u2/dmenem/software/netcdf-3.5.0/lib -lnetcdf
176    a.out
177    
178    
179    ======================================================
180    
181  % some matlab code for looking at fort.10 debug files  % some matlab code for looking at fort.10 debug files
182  load fort.10  load fort.10
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