/[MITgcm]/MITgcm_contrib/ocean_inversion_project/README

Diff of /MITgcm_contrib/ocean_inversion_project/README

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-revision 1.11 by dimitri,
Mon Oct 20 06:12:24 2003 UTC
+revision 1.19 by dimitri,
Thu Dec 18 03:17:56 2003 UTC
 Line 22 
 salinity initial and boundary conditions
   CVSROOT=:pserver:cvsanon@mitgcm.org:/u/u0/gcmpack
   cvs login ( CVS password: cvsanon )
-  cvs co -P MITgcm
+  cvs co -r checkpoint51n_branch MITgcm
 ===> put MITgcm_contrib/ocean_inversion_project in MITgcm directory
 Line 34 
 salinity initial and boundary conditions
   cd bin
   cp ../verification/global_with_exf/code/* .
   cp ../ocean_inversion_project/code/* .
-  rm ptracers_*.F
+  rm ptracers_*.F PTRACERS_OPTIONS.h
   ../tools/genmake2
     (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi)
   make depend
 Line 56 
 salinity initial and boundary conditions
   diff PTRACER01.0000000020.001.001.data S.0000000020.001.001.data
   diff PTRACER30.0000000020.001.001.data S.0000000020.001.001.data
+  diff PTRtave30.0000000020.001.001.data Stave.0000000020.001.001.data
+  diff PTRtave30.0000000020.001.001.data Stave.0000000020.001.001.data
  ==========================================================
- Instructions for carrying out a 3000-year quasi-stationary
+ MPI instructions for carrying out a 3000-year quasi-stationary
  integration using the global_ocean.90x40x15 configuration.
  ==========================================================
-===> compile, link, and execute
   cd MITgcm/exe
   rm *
   cd ../bin
   rm *
   cp ../verification/global_with_exf/code/* .
-  cp ../ocean_inversion_project/code/.genmakerc .
   cp ../ocean_inversion_project/code/* .
+  rm PTRACERS_OPTIONS.h
+  cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
+  cp SIZE.h_mpi SIZE.h
   ../tools/genmake2
     (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi)
   make depend
-Line 84 
 integration using the global_ocean.90x40
+Line 86 
 integration using the global_ocean.90x40
   cp ../ocean_inversion_project/input/* .
   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
-  mitgcmuv > output .txt &
+  cp data.stationary.1 data
+  mpirun -np 24 dplace -s1 mitgcmuv < /dev/null > & ! errlog &
+    (on orion: qsub job.orion)
  ==========================================================
- MPI instructions for carrying out a 3000-year quasi-stationary
+ MPI instructions for carrying out time-dependent, 1765-2005,
- integration using the global_ocean.90x40x15 configuration.
+ anthropogenic carbon perturbation tracer experiments using
+ the global_ocean.90x40x15 configuration.
  ==========================================================
-===> compile, link, and execute
   cd MITgcm/exe
   rm *
   cd ../bin
   rm *
   cp ../verification/global_with_exf/code/* .
-  cp ../ocean_inversion_project/code/.genmakerc .
   cp ../ocean_inversion_project/code/* .
   cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
   cp SIZE.h_mpi SIZE.h
-Line 113 
 integration using the global_ocean.90x40
+Line 114 
 integration using the global_ocean.90x40
   cp ../verification/global_with_exf/input/POLY3.COEFFS .
   ln -sf ../verification/global_with_exf/input/*.bin .
   cp ../ocean_inversion_project/input/* .
+  cp data.1765-2005 data
+  ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
+  ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
+  ln -sf ../ocean_inversion_project/atm_co2/splco2_cis92a.dat .
+  mpirun -np 24 dplace -s1 mitgcmuv < /dev/null > & ! errlog &
+    (on orion: qsub job.orion.td)
+ ==========================================================
+ Instructions for carrying out time-dependent, 1765-2005,
+ anthropogenic carbon perturbation tracer experiments using
+ global_ocean.90x40x15 configuration and netcdf output.
+ This assumes that the appropriate libnetcdf.a exists
+ and that it be specified in the genmake2 option file.
+ ==========================================================
+  cd MITgcm/exe
+  rm *
+  cd ../bin
+  rm *
+  cp ../verification/global_with_exf/code/* .
+  cp ../ocean_inversion_project/code/* .
+  cp PTRACERS_OPTIONS.h.netcdf PTRACERS_OPTIONS.h
+  cp ../ocean_inversion_project/write_netCDF/*  .
+ ### need customized option file; example below is for nireas
+  ../tools/genmake2 -of linux_ia32_g77_netcdf
+  make depend
+  make
+  cd ../exe
+  cp ../verification/global_with_exf/input/eedata .
+  cp ../verification/global_with_exf/input/data.* .
+  cp ../verification/global_with_exf/input/POLY3.COEFFS .
+  ln -sf ../verification/global_with_exf/input/*.bin .
+  cp ../ocean_inversion_project/input/* .
+  cp data.1765-2005.1 data
   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
-  mpirun -np 36 dplace -s1 -c3-38 mitgcmuv < /dev/null > & ! errlog &
+  ln -sf ../ocean_inversion_project/atm_co2/splco2_cis92a.dat .
+  mitgcmuv > output .txt &
+ ======================================================
+ ==========================================================
+ Instructions for generating netcdf output files on orion
+ ==========================================================
+ cd ocean_inversion_project/write_netCDF
+ setenv F_UFMTENDIAN big
+ (check that defaults in  mk_output.F are appropriate)
+ efc -W0 -WB mk_output.F write_nc_phys.F nc_util.F \
+      handle_errors.F write_nc_basisfnctns.F \
+      write_nc_diag_0D.F write_nc_diag_2D.F \
+      -I/u2/dmenem/software/netcdf-3.5.0/include \
+      -L/u2/dmenem/software/netcdf-3.5.0/lib -lnetcdf
+ a.out
  ======================================================

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