--- MITgcm_contrib/ocean_inversion_project/README	2003/09/27 07:45:51	1.8
+++ MITgcm_contrib/ocean_inversion_project/README	2003/10/28 00:27:48	1.14
@@ -22,7 +22,7 @@
 
  CVSROOT=:pserver:cvsanon@mitgcm.org:/u/u0/gcmpack
  cvs login ( CVS password: cvsanon )
- cvs co MITgcm
+ cvs co -P MITgcm
 
 2 ===> put MITgcm_contrib/ocean_inversion_project in MITgcm directory
 
@@ -33,10 +33,10 @@
 
  cd bin
  cp ../verification/global_with_exf/code/* .
- cp ../ocean_inversion_project/code/.genmakerc .
  cp ../ocean_inversion_project/code/* .
- rm ptracers_*.F
- ../tools/genmake
+ rm ptracers_*.F PTRACERS_OPTIONS.h
+ ../tools/genmake2
+   (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi)
  make depend
  make
 
@@ -56,23 +56,53 @@
 
  diff PTRACER01.0000000020.001.001.data S.0000000020.001.001.data
  diff PTRACER30.0000000020.001.001.data S.0000000020.001.001.data
+ diff PTRtave30.0000000020.001.001.data Stave.0000000020.001.001.data
+ diff PTRtave30.0000000020.001.001.data Stave.0000000020.001.001.data
 
 
 ==========================================================
-Instructions for carrying out a 3000-year quasi-stationary
+MPI instructions for carrying out a 3000-year quasi-stationary
 integration using the global_ocean.90x40x15 configuration.
 ==========================================================
 
-1 ===> compile, link, and execute
+ cd MITgcm/exe
+ rm *
+ cd ../bin
+ rm *
+ cp ../verification/global_with_exf/code/* .
+ cp ../ocean_inversion_project/code/* .
+ rm PTRACERS_OPTIONS.h
+ cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
+ cp SIZE.h_mpi SIZE.h
+ ../tools/genmake2
+   (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi)
+ make depend
+ make
+ cd ../exe
+ cp ../verification/global_with_exf/input/eedata .
+ cp ../verification/global_with_exf/input/data.* .
+ cp ../verification/global_with_exf/input/POLY3.COEFFS .
+ ln -sf ../verification/global_with_exf/input/*.bin .
+ cp ../ocean_inversion_project/input/* .
+ ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
+ ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
+ mpirun -np 24 dplace -s1 -c3-38 mitgcmuv < /dev/null > & ! errlog &
+
+
+==========================================================
+Instructions for carrying out time-dependent, 1765-2005,
+anthropogenic carbon perturbation tracer experiments using
+the global_ocean.90x40x15 configuration.
+==========================================================
 
  cd MITgcm/exe
  rm *
  cd ../bin
  rm *
  cp ../verification/global_with_exf/code/* .
- cp ../ocean_inversion_project/code/.genmakerc .
  cp ../ocean_inversion_project/code/* .
- ../tools/genmake
+ ../tools/genmake2
+   (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi)
  make depend
  make
  cd ../exe
@@ -81,28 +111,33 @@
  cp ../verification/global_with_exf/input/POLY3.COEFFS .
  ln -sf ../verification/global_with_exf/input/*.bin .
  cp ../ocean_inversion_project/input/* .
+ cp data.1765-2005 data
  ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
  ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
+ ln -sf ../ocean_inversion_project/atm_co2/splco2_cis92a.dat .
  mitgcmuv > output .txt &
 
 
 ==========================================================
-MPI instructions for carrying out a 3000-year quasi-stationary
-integration using the global_ocean.90x40x15 configuration.
+Instructions for carrying out time-dependent, 1765-2005,
+anthropogenic carbon perturbation tracer experiments using
+global_ocean.90x40x15 configuration and netcdf output.
+This assumes that the appropriate libnetcdf.a exists
+and that it be specified in the genmake2 option file.
 ==========================================================
 
-1 ===> compile, link, and execute
-
  cd MITgcm/exe
  rm *
  cd ../bin
  rm *
  cp ../verification/global_with_exf/code/* .
- cp ../ocean_inversion_project/code/.genmakerc .
  cp ../ocean_inversion_project/code/* .
- cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
- cp SIZE.h_mpi SIZE.h
- ../tools/genmake
+ cp PTRACERS_OPTIONS.h.netcdf PTRACERS_OPTIONS.h
+ cp ../ocean_inversion_project/write_netCDF/*  .
+
+### need customized option file; example below is for nireas
+ ../tools/genmake2 -of linux_ia32_g77_netcdf
+
  make depend
  make
  cd ../exe
@@ -111,9 +146,11 @@
  cp ../verification/global_with_exf/input/POLY3.COEFFS .
  ln -sf ../verification/global_with_exf/input/*.bin .
  cp ../ocean_inversion_project/input/* .
+ cp data.1765-2005 data
  ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
  ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
- mpirun -np 36 dplace -s1 -c25-60 mitgcmuv < /dev/null > & ! errlog &
+ ln -sf ../ocean_inversion_project/atm_co2/splco2_cis92a.dat .
+ mitgcmuv > output .txt &
 
 
 ======================================================