/[MITgcm]/MITgcm_contrib/ocean_inversion_project/README
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revision 1.9 by dimitri, Fri Oct 10 16:30:39 2003 UTC revision 1.20 by dimitri, Thu Dec 18 06:11:14 2003 UTC
# Line 22  salinity initial and boundary conditions Line 22  salinity initial and boundary conditions
22    
23   CVSROOT=:pserver:cvsanon@mitgcm.org:/u/u0/gcmpack   CVSROOT=:pserver:cvsanon@mitgcm.org:/u/u0/gcmpack
24   cvs login ( CVS password: cvsanon )   cvs login ( CVS password: cvsanon )
25   cvs co MITgcm   cvs co -r checkpoint51n_branch MITgcm
26    
27  2 ===> put MITgcm_contrib/ocean_inversion_project in MITgcm directory  2 ===> put MITgcm_contrib/ocean_inversion_project in MITgcm directory
28    
# Line 33  salinity initial and boundary conditions Line 33  salinity initial and boundary conditions
33    
34   cd bin   cd bin
35   cp ../verification/global_with_exf/code/* .   cp ../verification/global_with_exf/code/* .
  cp ../ocean_inversion_project/code/.genmakerc .  
36   cp ../ocean_inversion_project/code/* .   cp ../ocean_inversion_project/code/* .
37   rm ptracers_*.F   rm ptracers_*.F PTRACERS_OPTIONS.h
38   ../tools/genmake   ../tools/genmake2
39       (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi)
40   make depend   make depend
41   make   make
42    
# Line 56  salinity initial and boundary conditions Line 56  salinity initial and boundary conditions
56    
57   diff PTRACER01.0000000020.001.001.data S.0000000020.001.001.data   diff PTRACER01.0000000020.001.001.data S.0000000020.001.001.data
58   diff PTRACER30.0000000020.001.001.data S.0000000020.001.001.data   diff PTRACER30.0000000020.001.001.data S.0000000020.001.001.data
59     diff PTRtave30.0000000020.001.001.data Stave.0000000020.001.001.data
60     diff PTRtave30.0000000020.001.001.data Stave.0000000020.001.001.data
61    
62    
63  ==========================================================  ==========================================================
64  Instructions for carrying out a 3000-year quasi-stationary  MPI instructions for carrying out a 3000-year quasi-stationary
65  integration using the global_ocean.90x40x15 configuration.  integration using the global_ocean.90x40x15 configuration.
66  ==========================================================  ==========================================================
67    
 1 ===> compile, link, and execute  
   
68   cd MITgcm/exe   cd MITgcm/exe
69   rm *   rm *
70   cd ../bin   cd ../bin
71   rm *   rm *
72   cp ../verification/global_with_exf/code/* .   cp ../verification/global_with_exf/code/* .
  cp ../ocean_inversion_project/code/.genmakerc .  
73   cp ../ocean_inversion_project/code/* .   cp ../ocean_inversion_project/code/* .
74   ../tools/genmake   rm PTRACERS_OPTIONS.h
75     cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
76     cp SIZE.h_mpi SIZE.h
77     ../tools/genmake2
78       (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi)
79   make depend   make depend
80   make   make
81   cd ../exe   cd ../exe
# Line 83  integration using the global_ocean.90x40 Line 86  integration using the global_ocean.90x40
86   cp ../ocean_inversion_project/input/* .   cp ../ocean_inversion_project/input/* .
87   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
88   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
89   mitgcmuv > output .txt &   cp data.stationary.1 data
90     mpirun -np 24 dplace -s1 mitgcmuv < /dev/null > & ! errlog &
91       (on orion: qsub job.orion)
92    
93  ==========================================================  ==========================================================
94  MPI instructions for carrying out a 3000-year quasi-stationary  MPI instructions for carrying out time-dependent, 1765-2005,
95  integration using the global_ocean.90x40x15 configuration.  anthropogenic carbon perturbation tracer experiments using
96    the global_ocean.90x40x15 configuration.
97  ==========================================================  ==========================================================
98    
 1 ===> compile, link, and execute  
   
99   cd MITgcm/exe   cd MITgcm/exe
100   rm *   rm *
101   cd ../bin   cd ../bin
102   rm *   rm *
103   cp ../verification/global_with_exf/code/* .   cp ../verification/global_with_exf/code/* .
  cp ../ocean_inversion_project/code/.genmakerc .  
104   cp ../ocean_inversion_project/code/* .   cp ../ocean_inversion_project/code/* .
105   cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h   cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
106   cp SIZE.h_mpi SIZE.h   cp SIZE.h_mpi SIZE.h
107   ../tools/genmake   ../tools/genmake2
108       (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi)
109     make depend
110     make
111     cd ../exe
112     cp ../verification/global_with_exf/input/eedata .
113     cp ../verification/global_with_exf/input/data.* .
114     cp ../verification/global_with_exf/input/POLY3.COEFFS .
115     ln -sf ../verification/global_with_exf/input/*.bin .
116     cp ../ocean_inversion_project/input/* .
117     cp data.1765-2005 data
118     ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
119     ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
120     ln -sf ../ocean_inversion_project/atm_co2/splco2_cis92a.dat .
121     mpirun -np 24 dplace -s1 mitgcmuv < /dev/null > & ! errlog &
122       (on orion: qsub job.orion.td)
123    
124    
125    ==========================================================
126    Instructions for carrying out time-dependent, 1765-2005,
127    anthropogenic carbon perturbation tracer experiments using
128    global_ocean.90x40x15 configuration and netcdf output.
129    This assumes that the appropriate libnetcdf.a exists
130    and that it be specified in the genmake2 option file.
131    ==========================================================
132    
133     cd MITgcm/exe
134     rm *
135     cd ../bin
136     rm *
137     cp ../verification/global_with_exf/code/* .
138     cp ../ocean_inversion_project/code/* .
139     cp PTRACERS_OPTIONS.h.netcdf PTRACERS_OPTIONS.h
140     cp ../ocean_inversion_project/write_netCDF/*  .
141     \rm mk_output.F
142    
143    ### need customized option file; example below is for nireas
144     ../tools/genmake2 -of linux_ia32_g77_netcdf
145    
146   make depend   make depend
147   make   make
148   cd ../exe   cd ../exe
# Line 111  integration using the global_ocean.90x40 Line 151  integration using the global_ocean.90x40
151   cp ../verification/global_with_exf/input/POLY3.COEFFS .   cp ../verification/global_with_exf/input/POLY3.COEFFS .
152   ln -sf ../verification/global_with_exf/input/*.bin .   ln -sf ../verification/global_with_exf/input/*.bin .
153   cp ../ocean_inversion_project/input/* .   cp ../ocean_inversion_project/input/* .
154     cp data.1765-2005.1 data
155   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
156   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
157   mpirun -np 36 dplace -s1 -c3-38 mitgcmuv < /dev/null > & ! errlog &   ln -sf ../ocean_inversion_project/atm_co2/splco2_cis92a.dat .
158     mitgcmuv > output .txt &
159    
160    
161    ======================================================
162    
163    ==========================================================
164    Instructions for generating netcdf output files on orion
165    ==========================================================
166    
167    cd ocean_inversion_project/write_netCDF
168    setenv F_UFMTENDIAN big
169    
170    (check that defaults in  mk_output.F are appropriate)
171    
172    efc -W0 -WB mk_output.F write_nc_phys.F nc_util.F \
173         handle_errors.F write_nc_basisfnctns.F \
174         write_nc_diag_0D.F write_nc_diag_2D.F \
175         -I/u2/dmenem/software/netcdf-3.5.0/include \
176         -L/u2/dmenem/software/netcdf-3.5.0/lib -lnetcdf
177    a.out
178    
179    
180  ======================================================  ======================================================
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