/[MITgcm]/MITgcm_contrib/ocean_inversion_project/README
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revision 1.8 by dimitri, Sat Sep 27 07:45:51 2003 UTC revision 1.21 by dimitri, Thu Sep 30 23:45:07 2004 UTC
# Line 20  salinity initial and boundary conditions Line 20  salinity initial and boundary conditions
20    
21  1 ===> get MITgcm code from cvs repository  1 ===> get MITgcm code from cvs repository
22    
23   CVSROOT=:pserver:cvsanon@mitgcm.org:/u/u0/gcmpack   CVSROOT=:pserver:cvsanon@mitgcm.org:/u/gcmpack
24   cvs login ( CVS password: cvsanon )   cvs login ( CVS password: cvsanon )
25   cvs co MITgcm   cvs co -r checkpoint51n_branch MITgcm_code
26     cvs co -r checkpoint51n_branch MITgcm/verification/testreport
27     cvs co -r checkpoint51n_branch MITgcm/verification/global_with_exf
28    
29  2 ===> put MITgcm_contrib/ocean_inversion_project in MITgcm directory  2 ===> put MITgcm_contrib/ocean_inversion_project in MITgcm directory
30    
# Line 31  salinity initial and boundary conditions Line 33  salinity initial and boundary conditions
33    
34  3 ===> compile and link  3 ===> compile and link
35    
36     mkdir bin exe
37   cd bin   cd bin
38   cp ../verification/global_with_exf/code/* .   cp ../verification/global_with_exf/code/* .
  cp ../ocean_inversion_project/code/.genmakerc .  
39   cp ../ocean_inversion_project/code/* .   cp ../ocean_inversion_project/code/* .
40   rm ptracers_*.F   rm ptracers_*.F PTRACERS_OPTIONS.h
41   ../tools/genmake   ../tools/genmake2
42       (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi)
43   make depend   make depend
44   make   make
45    
# Line 56  salinity initial and boundary conditions Line 59  salinity initial and boundary conditions
59    
60   diff PTRACER01.0000000020.001.001.data S.0000000020.001.001.data   diff PTRACER01.0000000020.001.001.data S.0000000020.001.001.data
61   diff PTRACER30.0000000020.001.001.data S.0000000020.001.001.data   diff PTRACER30.0000000020.001.001.data S.0000000020.001.001.data
62     diff PTRtave30.0000000020.001.001.data Stave.0000000020.001.001.data
63     diff PTRtave30.0000000020.001.001.data Stave.0000000020.001.001.data
64    
65    
66  ==========================================================  ==========================================================
67  Instructions for carrying out a 3000-year quasi-stationary  MPI instructions for carrying out a 3000-year quasi-stationary
68  integration using the global_ocean.90x40x15 configuration.  integration using the global_ocean.90x40x15 configuration.
69  ==========================================================  ==========================================================
70    
 1 ===> compile, link, and execute  
   
71   cd MITgcm/exe   cd MITgcm/exe
72   rm *   rm *
73   cd ../bin   cd ../bin
74   rm *   rm *
75   cp ../verification/global_with_exf/code/* .   cp ../verification/global_with_exf/code/* .
  cp ../ocean_inversion_project/code/.genmakerc .  
76   cp ../ocean_inversion_project/code/* .   cp ../ocean_inversion_project/code/* .
77   ../tools/genmake   rm PTRACERS_OPTIONS.h
78     cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
79     cp SIZE.h_mpi SIZE.h
80     ../tools/genmake2
81       (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi)
82   make depend   make depend
83   make   make
84   cd ../exe   cd ../exe
# Line 83  integration using the global_ocean.90x40 Line 89  integration using the global_ocean.90x40
89   cp ../ocean_inversion_project/input/* .   cp ../ocean_inversion_project/input/* .
90   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
91   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
92   mitgcmuv > output .txt &   cp data.stationary.1 data
93     mpirun -np 24 dplace -s1 mitgcmuv < /dev/null > & ! errlog &
94       (on orion: qsub job.orion)
95    
96  ==========================================================  ==========================================================
97  MPI instructions for carrying out a 3000-year quasi-stationary  MPI instructions for carrying out time-dependent, 1765-2005,
98  integration using the global_ocean.90x40x15 configuration.  anthropogenic carbon perturbation tracer experiments using
99    the global_ocean.90x40x15 configuration.
100  ==========================================================  ==========================================================
101    
 1 ===> compile, link, and execute  
   
102   cd MITgcm/exe   cd MITgcm/exe
103   rm *   rm *
104   cd ../bin   cd ../bin
105   rm *   rm *
106   cp ../verification/global_with_exf/code/* .   cp ../verification/global_with_exf/code/* .
  cp ../ocean_inversion_project/code/.genmakerc .  
107   cp ../ocean_inversion_project/code/* .   cp ../ocean_inversion_project/code/* .
108   cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h   cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
109   cp SIZE.h_mpi SIZE.h   cp SIZE.h_mpi SIZE.h
110   ../tools/genmake   ../tools/genmake2
111       (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi)
112   make depend   make depend
113   make   make
114   cd ../exe   cd ../exe
# Line 111  integration using the global_ocean.90x40 Line 117  integration using the global_ocean.90x40
117   cp ../verification/global_with_exf/input/POLY3.COEFFS .   cp ../verification/global_with_exf/input/POLY3.COEFFS .
118   ln -sf ../verification/global_with_exf/input/*.bin .   ln -sf ../verification/global_with_exf/input/*.bin .
119   cp ../ocean_inversion_project/input/* .   cp ../ocean_inversion_project/input/* .
120     cp data.1765-2005 data
121   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
122   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
123   mpirun -np 36 dplace -s1 -c25-60 mitgcmuv < /dev/null > & ! errlog &   ln -sf ../ocean_inversion_project/atm_co2/splco2_cis92a.dat .
124     mpirun -np 24 dplace -s1 mitgcmuv < /dev/null > & ! errlog &
125       (on orion: qsub job.orion.td)
126    
127    
128    ==========================================================
129    Instructions for carrying out time-dependent, 1765-2005,
130    anthropogenic carbon perturbation tracer experiments using
131    global_ocean.90x40x15 configuration and netcdf output.
132    This assumes that the appropriate libnetcdf.a exists
133    and that it be specified in the genmake2 option file.
134    ==========================================================
135    
136     cd MITgcm/exe
137     rm *
138     cd ../bin
139     rm *
140     cp ../verification/global_with_exf/code/* .
141     cp ../ocean_inversion_project/code/* .
142     cp PTRACERS_OPTIONS.h.netcdf PTRACERS_OPTIONS.h
143     cp ../ocean_inversion_project/write_netCDF/*  .
144     \rm mk_output.F
145    
146    ### need customized option file; example below is for nireas
147     ../tools/genmake2 -of linux_ia32_g77_netcdf
148    
149     make depend
150     make
151     cd ../exe
152     cp ../verification/global_with_exf/input/eedata .
153     cp ../verification/global_with_exf/input/data.* .
154     cp ../verification/global_with_exf/input/POLY3.COEFFS .
155     ln -sf ../verification/global_with_exf/input/*.bin .
156     cp ../ocean_inversion_project/input/* .
157     cp data.1765-2005.1 data
158     ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
159     ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
160     ln -sf ../ocean_inversion_project/atm_co2/splco2_cis92a.dat .
161     mitgcmuv > output .txt &
162    
163    
164    ======================================================
165    
166    ==========================================================
167    Instructions for generating netcdf output files on orion
168    ==========================================================
169    
170    cd ocean_inversion_project/write_netCDF
171    setenv F_UFMTENDIAN big
172    
173    (check that defaults in  mk_output.F are appropriate)
174    
175    efc -W0 -WB mk_output.F write_nc_phys.F nc_util.F \
176         handle_errors.F write_nc_basisfnctns.F \
177         write_nc_diag_0D.F write_nc_diag_2D.F \
178         -I/u2/dmenem/software/netcdf-3.5.0/include \
179         -L/u2/dmenem/software/netcdf-3.5.0/lib -lnetcdf
180    a.out
181    
182    
183  ======================================================  ======================================================
# Line 158  for i=1:30, mydisp(i) Line 222  for i=1:30, mydisp(i)
222   end   end
223  end  end
224  plot(1:30,0*sumtracer,1:30,sumtracer)  plot(1:30,0*sumtracer,1:30,sumtracer)
225    
226    
227    % check that tracer flux is 1e18 mols / year
228    nb_seconds_per_year=31556880;
229    lon=2:4:360; lat=-78:4:78;
230    mask=readbin('hFacC.data',[90 40 15],1);
231    tracer=zeros(90,40,30); sumtracer=zeros(30,1);
232    for i=1:30, mydisp(i)
233     fn=['PtrFlux' myint2str(i) '.0000000180.data'];
234     tracer(:,:,i)=readbin(fn,[90 40],1);
235     for j=1:length(lat)
236        sumtracer(i) = sumtracer(i) + sum(tracer(:,j,i).*mask(:,j,1)) * ...
237            nb_seconds_per_year* (4*1.113195e+05)^2 * cos(pi*lat(j)/180);
238      end
239    end
240    plot(1:30,0*sumtracer,1:30,sumtracer-mmean(sumtracer))
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