/[MITgcm]/MITgcm_contrib/ocean_inversion_project/README
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revision 1.4 by dimitri, Wed Sep 24 04:52:38 2003 UTC revision 1.12 by dimitri, Tue Oct 21 03:25:30 2003 UTC
# Line 22  salinity initial and boundary conditions Line 22  salinity initial and boundary conditions
22    
23   CVSROOT=:pserver:cvsanon@mitgcm.org:/u/u0/gcmpack   CVSROOT=:pserver:cvsanon@mitgcm.org:/u/u0/gcmpack
24   cvs login ( CVS password: cvsanon )   cvs login ( CVS password: cvsanon )
25   cvs co MITgcm   cvs co -P MITgcm
26    
27  2 ===> put MITgcm_contrib/ocean_inversion_project in MITgcm directory  2 ===> put MITgcm_contrib/ocean_inversion_project in MITgcm directory
28    
# Line 33  salinity initial and boundary conditions Line 33  salinity initial and boundary conditions
33    
34   cd bin   cd bin
35   cp ../verification/global_with_exf/code/* .   cp ../verification/global_with_exf/code/* .
  cp ../ocean_inversion_project/code/.genmakerc .  
36   cp ../ocean_inversion_project/code/* .   cp ../ocean_inversion_project/code/* .
37   rm ptracers_init.F ptracers_forcing_surf.F PTRACERS.h   rm ptracers_*.F PTRACERS_OPTIONS.h
38   rm ptracers_read_mask.F ptracers_read_takahashi.F   ../tools/genmake2
39   ../tools/genmake     (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi)
40   make depend   make depend
41   make   make
42    
# Line 53  salinity initial and boundary conditions Line 52  salinity initial and boundary conditions
52   cp data.ptracers.test data.ptracers   cp data.ptracers.test data.ptracers
53   mitgcmuv > output.txt   mitgcmuv > output.txt
54        
55  5 ===> check that PTRACER output and salinity output  5 ===> check that PTRACER output and salinity output are identical.
   ===> are identical.  
56    
57   diff PTRACER01.0000000020.001.001.data S.0000000020.001.001.data   diff PTRACER01.0000000020.001.001.data S.0000000020.001.001.data
58   diff PTRACER30.0000000020.001.001.data S.0000000020.001.001.data   diff PTRACER30.0000000020.001.001.data S.0000000020.001.001.data
# Line 65  Instructions for carrying out a 3000-yea Line 63  Instructions for carrying out a 3000-yea
63  integration using the global_ocean.90x40x15 configuration.  integration using the global_ocean.90x40x15 configuration.
64  ==========================================================  ==========================================================
65    
66  1 ===> compile, link, and execute   cd MITgcm/exe
67     rm *
68     cd ../bin
69     rm *
70     cp ../verification/global_with_exf/code/* .
71     cp ../ocean_inversion_project/code/.genmakerc .
72     cp ../ocean_inversion_project/code/* .
73     rm PTRACERS_OPTIONS.h
74     ../tools/genmake2
75       (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi)
76     make depend
77     make
78     cd ../exe
79     cp ../verification/global_with_exf/input/eedata .
80     cp ../verification/global_with_exf/input/data.* .
81     cp ../verification/global_with_exf/input/POLY3.COEFFS .
82     ln -sf ../verification/global_with_exf/input/*.bin .
83     cp ../ocean_inversion_project/input/* .
84     ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
85     ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
86     mitgcmuv > output .txt &
87    
88    
89    ==========================================================
90    MPI instructions for carrying out a 3000-year quasi-stationary
91    integration using the global_ocean.90x40x15 configuration.
92    ==========================================================
93    
94     cd MITgcm/exe
95     rm *
96     cd ../bin
97     rm *
98     cp ../verification/global_with_exf/code/* .
99     cp ../ocean_inversion_project/code/.genmakerc .
100     cp ../ocean_inversion_project/code/* .
101     rm PTRACERS_OPTIONS.h
102     cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
103     cp SIZE.h_mpi SIZE.h
104     ../tools/genmake2
105       (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi)
106     make depend
107     make
108     cd ../exe
109     cp ../verification/global_with_exf/input/eedata .
110     cp ../verification/global_with_exf/input/data.* .
111     cp ../verification/global_with_exf/input/POLY3.COEFFS .
112     ln -sf ../verification/global_with_exf/input/*.bin .
113     cp ../ocean_inversion_project/input/* .
114     ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
115     ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
116     mpirun -np 36 dplace -s1 -c3-38 mitgcmuv < /dev/null > & ! errlog &
117    
118    
119    ==========================================================
120    Instructions for carrying out time-dependent, 1765-2005,
121    anthropogenic carbon perturbation tracer experiments using
122    the global_ocean.90x40x15 configuration.
123    ==========================================================
124    
125   cd MITgcm/exe   cd MITgcm/exe
126   rm *   rm *
# Line 74  integration using the global_ocean.90x40 Line 129  integration using the global_ocean.90x40
129   cp ../verification/global_with_exf/code/* .   cp ../verification/global_with_exf/code/* .
130   cp ../ocean_inversion_project/code/.genmakerc .   cp ../ocean_inversion_project/code/.genmakerc .
131   cp ../ocean_inversion_project/code/* .   cp ../ocean_inversion_project/code/* .
132   ../tools/genmake   ../tools/genmake2
133       (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi)
134   make depend   make depend
135   make   make
136   cd ../exe   cd ../exe
# Line 83  integration using the global_ocean.90x40 Line 139  integration using the global_ocean.90x40
139   cp ../verification/global_with_exf/input/POLY3.COEFFS .   cp ../verification/global_with_exf/input/POLY3.COEFFS .
140   ln -sf ../verification/global_with_exf/input/*.bin .   ln -sf ../verification/global_with_exf/input/*.bin .
141   cp ../ocean_inversion_project/input/* .   cp ../ocean_inversion_project/input/* .
142     cp data.1765-2005 data
143   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
144   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
145     ln -sf ../ocean_inversion_project/atm_co2/splco2_cis92a.dat .
146   mitgcmuv > output .txt &   mitgcmuv > output .txt &
147    
148    
# Line 117  mypcolor( Line 175  mypcolor(
175  % tracer uptake is approximately 1e18 mols.  % tracer uptake is approximately 1e18 mols.
176  lon=2:4:360; lat=-78:4:78;  lon=2:4:360; lat=-78:4:78;
177  thk=[50 70 100 140 190 240 290 340 390 440 490 540 590 640 690];  thk=[50 70 100 140 190 240 290 340 390 440 490 540 590 640 690];
178  tracer=zeros(90,40,15,30); sumtracer1=zeros(30,1);  mask=readbin('hFacC.001.001.data',[90 40 15],1);
 for i=1:30, mydisp(i)  
  fn=['PTRACER' myint2str(i) '.0000000180.001.001.data'];  
  tracer(:,:,:,i)=readbin(fn,[90 40 15],1);  
  for x=1:length(lon)  
   for y=1:length(lat)  
    for z=1:length(thk)  
     sumtracer1(i) = sumtracer1(i) + tracer(x,y,z,i) * ...  
                     thk(z) * (4*1.113195e+05)^2 * cos(pi*lat(y)/180);  
    end  
   end  
  end  
 end  
   
 % some matlab code for checking that one year's worth of  
 % tracer uptake is approximately 1e18 mols.  
 lon=2:4:360; lat=-78:4:78;  
 thk=[50 70 100 140 190 240 290 340 390 440 490 540 590 640 690];  
179  tracer=zeros(90,40,15,30); sumtracer=zeros(30,1);  tracer=zeros(90,40,15,30); sumtracer=zeros(30,1);
180  for i=1:30, mydisp(i)  for i=1:30, mydisp(i)
181   fn=['PTRACER' myint2str(i) '.0000003600.001.001.data'];   fn=['PTRACER' myint2str(i) '.0000001800.001.001.data'];
182   tracer(:,:,:,i)=readbin(fn,[90 40 15],1);   tracer(:,:,:,i)=readbin(fn,[90 40 15],1);
183   for j=1:length(lat)   for j=1:length(lat)
184    for k=1:length(thk)    for k=1:length(thk)
185     sumtracer(i) = sumtracer(i) + sum(tracer(:,j,k,i)) * ...     sumtracer(i) = sumtracer(i) + sum(tracer(:,j,k,i).*mask(:,j,k)) * ...
186                    thk(k) * (4*1.113195e+05)^2 * cos(pi*lat(j)/180);                    thk(k) * (4*1.113195e+05)^2 * cos(pi*lat(j)/180);
187    end    end
188   end   end
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