/[MITgcm]/MITgcm_contrib/ocean_inversion_project/README
ViewVC logotype

Diff of /MITgcm_contrib/ocean_inversion_project/README

Parent Directory Parent Directory | Revision Log Revision Log | View Revision Graph Revision Graph | View Patch Patch

revision 1.20 by dimitri, Thu Dec 18 06:11:14 2003 UTC revision 1.30 by dimitri, Wed Aug 24 20:59:54 2005 UTC
# Line 12  have been converted to binary format in Line 12  have been converted to binary format in
12  having to link netcdf library with MITgcm code.  See  having to link netcdf library with MITgcm code.  See
13  respective README files in each directory for details.  respective README files in each directory for details.
14    
15    Instructions for CFC-11 computations are in
16    cvs co -r release1_50yr MITgcm
17    MITgcm/verification/global_with_CFC11/README
18    
19    
20    Notes and problems:
21    ===================
22    
23    there is problem generating ECCO_MaskAreaBathy.nc on columbia
24    works OK on nireas
25    
26    variable global_mean_conc in 0D output from mk_output.F is
27    screwed up
28    
29    
30    
31  ===============================================  ===============================================
32  First check that pkg/ptracers works OK by using  First check that pkg/ptracers works OK by using
# Line 20  salinity initial and boundary conditions Line 35  salinity initial and boundary conditions
35    
36  1 ===> get MITgcm code from cvs repository  1 ===> get MITgcm code from cvs repository
37    
38   CVSROOT=:pserver:cvsanon@mitgcm.org:/u/u0/gcmpack   cvs co -r checkpoint51n_branch MITgcm_code
39   cvs login ( CVS password: cvsanon )   cvs co -r checkpoint51n_branch MITgcm/verification/testreport
40   cvs co -r checkpoint51n_branch MITgcm   cvs co -r checkpoint51n_branch MITgcm/verification/global_with_exf
41    
42  2 ===> put MITgcm_contrib/ocean_inversion_project in MITgcm directory  2 ===> put MITgcm_contrib/ocean_inversion_project in MITgcm directory
43    
# Line 31  salinity initial and boundary conditions Line 46  salinity initial and boundary conditions
46    
47  3 ===> compile and link  3 ===> compile and link
48    
49     mkdir bin exe
50   cd bin   cd bin
51   cp ../verification/global_with_exf/code/* .   \cp ../verification/global_with_exf/code/* .
52   cp ../ocean_inversion_project/code/* .   \cp ../ocean_inversion_project/code/* .
53   rm ptracers_*.F PTRACERS_OPTIONS.h   \rm ptracers_*.F PTRACERS_OPTIONS.h
54   ../tools/genmake2   ../tools/genmake2
55     (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi)     (on orion:    ../tools/genmake2 -of linux_ia64_efc+mpi       )
56       (on columbia: ../tools/genmake2 -of linux_ia64_efc+mpi_altix )
57   make depend   make depend
58   make   make -j 16
59    
60  4 ===> execute  4 ===> execute
61    
62   cd ../exe   cd ../exe
63   cp ../verification/global_with_exf/input/eedata .   \cp ../verification/global_with_exf/input/eedata .
64   cp ../verification/global_with_exf/input/data.* .   \cp ../verification/global_with_exf/input/data.* .
65   cp ../verification/global_with_exf/input/POLY3.COEFFS .   \cp ../verification/global_with_exf/input/POLY3.COEFFS .
66   ln -sf ../verification/global_with_exf/input/*.bin .   \ln -sf ../verification/global_with_exf/input/*.bin .
67   cp ../ocean_inversion_project/input/* .   \cp ../ocean_inversion_project/input/* .
68   cp data.test data   \cp data.test data
69   cp data.ptracers.test data.ptracers   \cp data.ptracers.test data.ptracers
70   mitgcmuv > output.txt   ./mitgcmuv >! output.txt
71      
72  5 ===> check that PTRACER output and salinity output are identical.  5 ===> check that PTRACER output and salinity output are identical.
73    
74   diff PTRACER01.0000000020.001.001.data S.0000000020.001.001.data   diff PTRACER01.0000000020.001.001.data S.0000000020.001.001.data
# Line 90  integration using the global_ocean.90x40 Line 107  integration using the global_ocean.90x40
107   mpirun -np 24 dplace -s1 mitgcmuv < /dev/null > & ! errlog &   mpirun -np 24 dplace -s1 mitgcmuv < /dev/null > & ! errlog &
108     (on orion: qsub job.orion)     (on orion: qsub job.orion)
109    
110    
111  ==========================================================  ==========================================================
112  MPI instructions for carrying out time-dependent, 1765-2005,  MPI instructions for carrying out time-dependent, 1765-2005,
113  anthropogenic carbon perturbation tracer experiments using  anthropogenic carbon perturbation tracer experiments using
# Line 158  and that it be specified in the genmake2 Line 176  and that it be specified in the genmake2
176   mitgcmuv > output .txt &   mitgcmuv > output .txt &
177    
178    
179  ======================================================  ==========================================================
180    Instructions for carrying out time-dependent, 1765-2005,
181    anthropogenic carbon perturbation tracer experiments using
182    the ecco1x1 configuration and netcdf output on columbia.
183    This assumes that the appropriate libnetcdf.a exists
184    and that it be specified in the genmake2 option file.
185    It also assumes that surface forcing files are available
186    in MITgcm/../iter69
187    ==========================================================
188    
189     cd MITgcm/exe
190     \rm *
191     cd ../bin
192     \rm *
193     \cp ../ocean_inversion_project/code_ecco1x1/* .
194     \cp ../ocean_inversion_project/write_netCDF/*  .
195     \rm mk_output.F
196     \cp SIZE.h.96 SIZE.h
197     ../tools/genmake2 -of linux_ia64_efc+mpi_altix
198     make depend
199     make -j 16
200     cd ../exe
201     \cp ../ocean_inversion_project/input_ecco1x1/* .
202     ln -sf ../../iter69/* .
203     ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
204     ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
205     ln -sf ../ocean_inversion_project/atm_co2/splco2_cis92a.dat .
206     qsub job01
207    
208    
209    ==========================================================
210    Instructions for carrying out 3000-year quasi-stationary
211    integration using the ecco1x1 configuration and netcdf
212    output on columbia.
213    This assumes that the appropriate libnetcdf.a exists
214    and that it be specified in the genmake2 option file.
215    It also assumes that surface forcing files are available
216    in MITgcm/../iter69
217    ==========================================================
218    
219     cd MITgcm/exe
220     \rm *
221     cd ../bin
222     \rm *
223     \cp ../ocean_inversion_project/code_ecco1x1/* .
224     \cp ../ocean_inversion_project/write_netCDF/*  .
225     \rm mk_output.F
226     \cp SIZE.h.96 SIZE.h
227     \cp PTRACERS_OPTIONS.h.stationary PTRACERS_OPTIONS.h
228     ../tools/genmake2 -of linux_ia64_efc+mpi_altix
229     make depend
230     make -j 16
231     cd ../exe
232     \cp ../ocean_inversion_project/input_ecco1x1/* .
233     \ln -sf ../../iter69/* .
234     \ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
235     \ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
236     qsub job01s
237    
238    
239    ==========================================================
240    Instructions for generating netcdf output files on columbia
241    ==========================================================
242    
243    cd ocean_inversion_project/write_netCDF
244    setenv F_UFMTENDIAN big
245    
246    (check that defaults in  mk_output.F are appropriate)
247    
248    ifort -assume byterecl -W0 -WB mk_output.F write_nc_phys.F nc_util.F \
249         handle_errors.F write_nc_basisfnctns.F \
250         write_nc_diag_0D.F write_nc_diag_2D.F \
251         -I/u/menemenl/software/netcdf-3.5.0/include \
252         -L/u/menemenl/software/netcdf-3.5.0/lib -lnetcdf
253    ./a.out
254    
255    
256  ==========================================================  ==========================================================
257  Instructions for generating netcdf output files on orion  Instructions for generating netcdf output files on orion
# Line 174  efc -W0 -WB mk_output.F write_nc_phys.F Line 267  efc -W0 -WB mk_output.F write_nc_phys.F
267       write_nc_diag_0D.F write_nc_diag_2D.F \       write_nc_diag_0D.F write_nc_diag_2D.F \
268       -I/u2/dmenem/software/netcdf-3.5.0/include \       -I/u2/dmenem/software/netcdf-3.5.0/include \
269       -L/u2/dmenem/software/netcdf-3.5.0/lib -lnetcdf       -L/u2/dmenem/software/netcdf-3.5.0/lib -lnetcdf
270  a.out  ./a.out
271    
272    
273  ======================================================  ======================================================
# Line 219  for i=1:30, mydisp(i) Line 312  for i=1:30, mydisp(i)
312   end   end
313  end  end
314  plot(1:30,0*sumtracer,1:30,sumtracer)  plot(1:30,0*sumtracer,1:30,sumtracer)
315    
316    
317    % check that tracer flux is 1e18 mols / year
318    nb_seconds_per_year=31556880;
319    lon=2:4:360; lat=-78:4:78;
320    mask=readbin('hFacC.data',[90 40 15],1);
321    tracer=zeros(90,40,30); sumtracer=zeros(30,1);
322    for i=1:30, mydisp(i)
323     fn=['PtrFlux' myint2str(i) '.0000000180.data'];
324     tracer(:,:,i)=readbin(fn,[90 40],1);
325     for j=1:length(lat)
326        sumtracer(i) = sumtracer(i) + sum(tracer(:,j,i).*mask(:,j,1)) * ...
327            nb_seconds_per_year* (4*1.113195e+05)^2 * cos(pi*lat(j)/180);
328      end
329    end
330    plot(1:30,0*sumtracer,1:30,sumtracer-mmean(sumtracer))
Legend:
Removed from v.1.20  
changed lines
  Added in v.1.30
  ViewVC Help
Powered by ViewVC 1.1.22