/[MITgcm]/MITgcm_contrib/ocean_inversion_project/README
ViewVC logotype

Diff of /MITgcm_contrib/ocean_inversion_project/README

Parent Directory Parent Directory | Revision Log Revision Log | View Revision Graph Revision Graph | View Patch Patch

revision 1.3 by dimitri, Tue Sep 23 04:34:23 2003 UTC revision 1.20 by dimitri, Thu Dec 18 06:11:14 2003 UTC
# Line 22  salinity initial and boundary conditions Line 22  salinity initial and boundary conditions
22    
23   CVSROOT=:pserver:cvsanon@mitgcm.org:/u/u0/gcmpack   CVSROOT=:pserver:cvsanon@mitgcm.org:/u/u0/gcmpack
24   cvs login ( CVS password: cvsanon )   cvs login ( CVS password: cvsanon )
25   cvs co MITgcm   cvs co -r checkpoint51n_branch MITgcm
26    
27  2 ===> put MITgcm_contrib/ocean_inversion_project in MITgcm directory  2 ===> put MITgcm_contrib/ocean_inversion_project in MITgcm directory
28    
# Line 33  salinity initial and boundary conditions Line 33  salinity initial and boundary conditions
33    
34   cd bin   cd bin
35   cp ../verification/global_with_exf/code/* .   cp ../verification/global_with_exf/code/* .
  cp ../ocean_inversion_project/code/.genmakerc .  
36   cp ../ocean_inversion_project/code/* .   cp ../ocean_inversion_project/code/* .
37   cp ptracers_forcing.F.test ptracers_forcing.F   rm ptracers_*.F PTRACERS_OPTIONS.h
38   rm ptracers_init.F ptracers_forcing.F   ../tools/genmake2
39   ../tools/genmake     (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi)
40   make depend   make depend
41   make   make
42    
# Line 51  salinity initial and boundary conditions Line 50  salinity initial and boundary conditions
50   cp ../ocean_inversion_project/input/* .   cp ../ocean_inversion_project/input/* .
51   cp data.test data   cp data.test data
52   cp data.ptracers.test data.ptracers   cp data.ptracers.test data.ptracers
53   mitgcmuv > output .txt   mitgcmuv > output.txt
54        
55  5 ===> check that PTRACER output for tracer 1 and tracer 30  5 ===> check that PTRACER output and salinity output are identical.
   ===> is identical to salinity output  
56    
57   diff PTRACER01.0000000020.001.001.data S.0000000020.001.001.data   diff PTRACER01.0000000020.001.001.data S.0000000020.001.001.data
58   diff PTRACER30.0000000020.001.001.data S.0000000020.001.001.data   diff PTRACER30.0000000020.001.001.data S.0000000020.001.001.data
59     diff PTRtave30.0000000020.001.001.data Stave.0000000020.001.001.data
60     diff PTRtave30.0000000020.001.001.data Stave.0000000020.001.001.data
61    
62    
63  ==========================================================  ==========================================================
64  Instructions for carrying out a 3000-year quasi-stationary  MPI instructions for carrying out a 3000-year quasi-stationary
65  integration using the global_ocean.90x40x15 configuration.  integration using the global_ocean.90x40x15 configuration.
66  ==========================================================  ==========================================================
67    
68  1 ===> compile, link, and execute   cd MITgcm/exe
69     rm *
70     cd ../bin
71     rm *
72     cp ../verification/global_with_exf/code/* .
73     cp ../ocean_inversion_project/code/* .
74     rm PTRACERS_OPTIONS.h
75     cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
76     cp SIZE.h_mpi SIZE.h
77     ../tools/genmake2
78       (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi)
79     make depend
80     make
81     cd ../exe
82     cp ../verification/global_with_exf/input/eedata .
83     cp ../verification/global_with_exf/input/data.* .
84     cp ../verification/global_with_exf/input/POLY3.COEFFS .
85     ln -sf ../verification/global_with_exf/input/*.bin .
86     cp ../ocean_inversion_project/input/* .
87     ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
88     ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
89     cp data.stationary.1 data
90     mpirun -np 24 dplace -s1 mitgcmuv < /dev/null > & ! errlog &
91       (on orion: qsub job.orion)
92    
93    ==========================================================
94    MPI instructions for carrying out time-dependent, 1765-2005,
95    anthropogenic carbon perturbation tracer experiments using
96    the global_ocean.90x40x15 configuration.
97    ==========================================================
98    
99     cd MITgcm/exe
100     rm *
101     cd ../bin
102     rm *
103     cp ../verification/global_with_exf/code/* .
104     cp ../ocean_inversion_project/code/* .
105     cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
106     cp SIZE.h_mpi SIZE.h
107     ../tools/genmake2
108       (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi)
109     make depend
110     make
111     cd ../exe
112     cp ../verification/global_with_exf/input/eedata .
113     cp ../verification/global_with_exf/input/data.* .
114     cp ../verification/global_with_exf/input/POLY3.COEFFS .
115     ln -sf ../verification/global_with_exf/input/*.bin .
116     cp ../ocean_inversion_project/input/* .
117     cp data.1765-2005 data
118     ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
119     ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
120     ln -sf ../ocean_inversion_project/atm_co2/splco2_cis92a.dat .
121     mpirun -np 24 dplace -s1 mitgcmuv < /dev/null > & ! errlog &
122       (on orion: qsub job.orion.td)
123    
124    
125    ==========================================================
126    Instructions for carrying out time-dependent, 1765-2005,
127    anthropogenic carbon perturbation tracer experiments using
128    global_ocean.90x40x15 configuration and netcdf output.
129    This assumes that the appropriate libnetcdf.a exists
130    and that it be specified in the genmake2 option file.
131    ==========================================================
132    
133   cd MITgcm/exe   cd MITgcm/exe
134   rm *   rm *
135   cd ../bin   cd ../bin
136   rm *   rm *
137   cp ../verification/global_with_exf/code/* .   cp ../verification/global_with_exf/code/* .
  cp ../ocean_inversion_project/code/.genmakerc .  
138   cp ../ocean_inversion_project/code/* .   cp ../ocean_inversion_project/code/* .
139   ../tools/genmake   cp PTRACERS_OPTIONS.h.netcdf PTRACERS_OPTIONS.h
140     cp ../ocean_inversion_project/write_netCDF/*  .
141     \rm mk_output.F
142    
143    ### need customized option file; example below is for nireas
144     ../tools/genmake2 -of linux_ia32_g77_netcdf
145    
146   make depend   make depend
147   make   make
148   cd ../exe   cd ../exe
# Line 83  integration using the global_ocean.90x40 Line 151  integration using the global_ocean.90x40
151   cp ../verification/global_with_exf/input/POLY3.COEFFS .   cp ../verification/global_with_exf/input/POLY3.COEFFS .
152   ln -sf ../verification/global_with_exf/input/*.bin .   ln -sf ../verification/global_with_exf/input/*.bin .
153   cp ../ocean_inversion_project/input/* .   cp ../ocean_inversion_project/input/* .
154     cp data.1765-2005.1 data
155   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
156   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
157     ln -sf ../ocean_inversion_project/atm_co2/splco2_cis92a.dat .
158   mitgcmuv > output .txt &   mitgcmuv > output .txt &
159    
160    
161  ======================================================  ======================================================
162    
163    ==========================================================
164    Instructions for generating netcdf output files on orion
165    ==========================================================
166    
167    cd ocean_inversion_project/write_netCDF
168    setenv F_UFMTENDIAN big
169    
170    (check that defaults in  mk_output.F are appropriate)
171    
172    efc -W0 -WB mk_output.F write_nc_phys.F nc_util.F \
173         handle_errors.F write_nc_basisfnctns.F \
174         write_nc_diag_0D.F write_nc_diag_2D.F \
175         -I/u2/dmenem/software/netcdf-3.5.0/include \
176         -L/u2/dmenem/software/netcdf-3.5.0/lib -lnetcdf
177    a.out
178    
179    
180    ======================================================
181    
182  % some matlab code for looking at fort.10 debug files  % some matlab code for looking at fort.10 debug files
183  load fort.10  load fort.10
184  tak=zeros(90,40,12);  tak=zeros(90,40,12);
# Line 102  clf, contourf(lon,lat,mean(tak(:,:,1),3) Line 191  clf, contourf(lon,lat,mean(tak(:,:,1),3)
191  caxis([-6 6]), colorbar, plotland  caxis([-6 6]), colorbar, plotland
192    
193  % some matlab code for looking at PTRACER output files  % some matlab code for looking at PTRACER output files
194    salt=readbin('S.0000000020.001.001.data',[90 40 15],1);
195  tracer=zeros(90,40,15,30);  tracer=zeros(90,40,15,30);
196  for i=1:30  for i=1:30
197   fn=['PTRACER' myint2str(i) '.0000000020.001.001.data'];   fn=['PTRACER' myint2str(i) '.0000000020.001.001.data'];
# Line 109  for i=1:30 Line 199  for i=1:30
199   clf, mypcolor(tracer(:,:,1,i)'); pause(1)   clf, mypcolor(tracer(:,:,1,i)'); pause(1)
200  end  end
201  tmp=sum(tracer,4); clf, mypcolor(tmp(:,:,1)')  tmp=sum(tracer,4); clf, mypcolor(tmp(:,:,1)')
202    mypcolor(
203    
 % some matlab code for checking that one year's worth of  
 % tracer uptake is approximately 1e18 mols.  
 lon=2:4:360; lat=-78:4:78;  
 thk=[50 70 100 140 190 240 290 340 390 440 490 540 590 640 690];  
 tracer=zeros(90,40,15,30); sumtracer1=zeros(30,1);  
 for i=1:30, mydisp(i)  
  fn=['PTRACER' myint2str(i) '.0000000180.001.001.data'];  
  tracer(:,:,:,i)=readbin(fn,[90 40 15],1);  
  for x=1:length(lon)  
   for y=1:length(lat)  
    for z=1:length(thk)  
     sumtracer1(i) = sumtracer1(i) + tracer(x,y,z,i) * ...  
                     thk(z) * (4*1.113195e+05)^2 * cos(pi*lat(y)/180);  
    end  
   end  
  end  
 end  
204    
205  % some matlab code for checking that one year's worth of  % some matlab code for checking that one year's worth of
206  % tracer uptake is approximately 1e18 mols.  % tracer uptake is approximately 1e18 mols.
207  lon=2:4:360; lat=-78:4:78;  lon=2:4:360; lat=-78:4:78;
208  thk=[50 70 100 140 190 240 290 340 390 440 490 540 590 640 690];  thk=[50 70 100 140 190 240 290 340 390 440 490 540 590 640 690];
209    mask=readbin('hFacC.001.001.data',[90 40 15],1);
210  tracer=zeros(90,40,15,30); sumtracer=zeros(30,1);  tracer=zeros(90,40,15,30); sumtracer=zeros(30,1);
211  for i=1:30, mydisp(i)  for i=1:30, mydisp(i)
212   fn=['PTRACER' myint2str(i) '.0000000180.001.001.data'];   fn=['PTRACER' myint2str(i) '.0000001800.001.001.data'];
213   tracer(:,:,:,i)=readbin(fn,[90 40 15],1);   tracer(:,:,:,i)=readbin(fn,[90 40 15],1);
214   for j=1:length(lat)   for j=1:length(lat)
215    for k=1:length(thk)    for k=1:length(thk)
216     sumtracer(i) = sumtracer(i) + sum(tracer(:,j,k,i)) * ...     sumtracer(i) = sumtracer(i) + sum(tracer(:,j,k,i).*mask(:,j,k)) * ...
217                    thk(k) * (4*1.113195e+05)^2 * cos(pi*lat(j)/180);                    thk(k) * (4*1.113195e+05)^2 * cos(pi*lat(j)/180);
218    end    end
219   end   end
220  end  end
221    plot(1:30,0*sumtracer,1:30,sumtracer)
Legend:
Removed from v.1.3  
changed lines
  Added in v.1.20
  ViewVC Help
Powered by ViewVC 1.1.22