/[MITgcm]/MITgcm_contrib/ocean_inversion_project/README
ViewVC logotype

Diff of /MITgcm_contrib/ocean_inversion_project/README

Parent Directory Parent Directory | Revision Log Revision Log | View Revision Graph Revision Graph | View Patch Patch

revision 1.12 by dimitri, Tue Oct 21 03:25:30 2003 UTC revision 1.21 by dimitri, Thu Sep 30 23:45:07 2004 UTC
# Line 20  salinity initial and boundary conditions Line 20  salinity initial and boundary conditions
20    
21  1 ===> get MITgcm code from cvs repository  1 ===> get MITgcm code from cvs repository
22    
23   CVSROOT=:pserver:cvsanon@mitgcm.org:/u/u0/gcmpack   CVSROOT=:pserver:cvsanon@mitgcm.org:/u/gcmpack
24   cvs login ( CVS password: cvsanon )   cvs login ( CVS password: cvsanon )
25   cvs co -P MITgcm   cvs co -r checkpoint51n_branch MITgcm_code
26     cvs co -r checkpoint51n_branch MITgcm/verification/testreport
27     cvs co -r checkpoint51n_branch MITgcm/verification/global_with_exf
28    
29  2 ===> put MITgcm_contrib/ocean_inversion_project in MITgcm directory  2 ===> put MITgcm_contrib/ocean_inversion_project in MITgcm directory
30    
# Line 31  salinity initial and boundary conditions Line 33  salinity initial and boundary conditions
33    
34  3 ===> compile and link  3 ===> compile and link
35    
36     mkdir bin exe
37   cd bin   cd bin
38   cp ../verification/global_with_exf/code/* .   cp ../verification/global_with_exf/code/* .
39   cp ../ocean_inversion_project/code/* .   cp ../ocean_inversion_project/code/* .
# Line 56  salinity initial and boundary conditions Line 59  salinity initial and boundary conditions
59    
60   diff PTRACER01.0000000020.001.001.data S.0000000020.001.001.data   diff PTRACER01.0000000020.001.001.data S.0000000020.001.001.data
61   diff PTRACER30.0000000020.001.001.data S.0000000020.001.001.data   diff PTRACER30.0000000020.001.001.data S.0000000020.001.001.data
62     diff PTRtave30.0000000020.001.001.data Stave.0000000020.001.001.data
63     diff PTRtave30.0000000020.001.001.data Stave.0000000020.001.001.data
64    
65    
66  ==========================================================  ==========================================================
67  Instructions for carrying out a 3000-year quasi-stationary  MPI instructions for carrying out a 3000-year quasi-stationary
68  integration using the global_ocean.90x40x15 configuration.  integration using the global_ocean.90x40x15 configuration.
69  ==========================================================  ==========================================================
70    
# Line 68  integration using the global_ocean.90x40 Line 73  integration using the global_ocean.90x40
73   cd ../bin   cd ../bin
74   rm *   rm *
75   cp ../verification/global_with_exf/code/* .   cp ../verification/global_with_exf/code/* .
  cp ../ocean_inversion_project/code/.genmakerc .  
76   cp ../ocean_inversion_project/code/* .   cp ../ocean_inversion_project/code/* .
77   rm PTRACERS_OPTIONS.h   rm PTRACERS_OPTIONS.h
78     cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
79     cp SIZE.h_mpi SIZE.h
80   ../tools/genmake2   ../tools/genmake2
81     (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi)     (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi)
82   make depend   make depend
# Line 83  integration using the global_ocean.90x40 Line 89  integration using the global_ocean.90x40
89   cp ../ocean_inversion_project/input/* .   cp ../ocean_inversion_project/input/* .
90   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
91   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
92   mitgcmuv > output .txt &   cp data.stationary.1 data
93     mpirun -np 24 dplace -s1 mitgcmuv < /dev/null > & ! errlog &
94       (on orion: qsub job.orion)
95    
96  ==========================================================  ==========================================================
97  MPI instructions for carrying out a 3000-year quasi-stationary  MPI instructions for carrying out time-dependent, 1765-2005,
98  integration using the global_ocean.90x40x15 configuration.  anthropogenic carbon perturbation tracer experiments using
99    the global_ocean.90x40x15 configuration.
100  ==========================================================  ==========================================================
101    
102   cd MITgcm/exe   cd MITgcm/exe
# Line 96  integration using the global_ocean.90x40 Line 104  integration using the global_ocean.90x40
104   cd ../bin   cd ../bin
105   rm *   rm *
106   cp ../verification/global_with_exf/code/* .   cp ../verification/global_with_exf/code/* .
  cp ../ocean_inversion_project/code/.genmakerc .  
107   cp ../ocean_inversion_project/code/* .   cp ../ocean_inversion_project/code/* .
  rm PTRACERS_OPTIONS.h  
108   cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h   cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
109   cp SIZE.h_mpi SIZE.h   cp SIZE.h_mpi SIZE.h
110   ../tools/genmake2   ../tools/genmake2
# Line 111  integration using the global_ocean.90x40 Line 117  integration using the global_ocean.90x40
117   cp ../verification/global_with_exf/input/POLY3.COEFFS .   cp ../verification/global_with_exf/input/POLY3.COEFFS .
118   ln -sf ../verification/global_with_exf/input/*.bin .   ln -sf ../verification/global_with_exf/input/*.bin .
119   cp ../ocean_inversion_project/input/* .   cp ../ocean_inversion_project/input/* .
120     cp data.1765-2005 data
121   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
122   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
123   mpirun -np 36 dplace -s1 -c3-38 mitgcmuv < /dev/null > & ! errlog &   ln -sf ../ocean_inversion_project/atm_co2/splco2_cis92a.dat .
124     mpirun -np 24 dplace -s1 mitgcmuv < /dev/null > & ! errlog &
125       (on orion: qsub job.orion.td)
126    
127    
128  ==========================================================  ==========================================================
129  Instructions for carrying out time-dependent, 1765-2005,  Instructions for carrying out time-dependent, 1765-2005,
130  anthropogenic carbon perturbation tracer experiments using  anthropogenic carbon perturbation tracer experiments using
131  the global_ocean.90x40x15 configuration.  global_ocean.90x40x15 configuration and netcdf output.
132    This assumes that the appropriate libnetcdf.a exists
133    and that it be specified in the genmake2 option file.
134  ==========================================================  ==========================================================
135    
136   cd MITgcm/exe   cd MITgcm/exe
# Line 127  the global_ocean.90x40x15 configuration. Line 138  the global_ocean.90x40x15 configuration.
138   cd ../bin   cd ../bin
139   rm *   rm *
140   cp ../verification/global_with_exf/code/* .   cp ../verification/global_with_exf/code/* .
  cp ../ocean_inversion_project/code/.genmakerc .  
141   cp ../ocean_inversion_project/code/* .   cp ../ocean_inversion_project/code/* .
142   ../tools/genmake2   cp PTRACERS_OPTIONS.h.netcdf PTRACERS_OPTIONS.h
143     (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi)   cp ../ocean_inversion_project/write_netCDF/*  .
144     \rm mk_output.F
145    
146    ### need customized option file; example below is for nireas
147     ../tools/genmake2 -of linux_ia32_g77_netcdf
148    
149   make depend   make depend
150   make   make
151   cd ../exe   cd ../exe
# Line 139  the global_ocean.90x40x15 configuration. Line 154  the global_ocean.90x40x15 configuration.
154   cp ../verification/global_with_exf/input/POLY3.COEFFS .   cp ../verification/global_with_exf/input/POLY3.COEFFS .
155   ln -sf ../verification/global_with_exf/input/*.bin .   ln -sf ../verification/global_with_exf/input/*.bin .
156   cp ../ocean_inversion_project/input/* .   cp ../ocean_inversion_project/input/* .
157   cp data.1765-2005 data   cp data.1765-2005.1 data
158   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
159   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
160   ln -sf ../ocean_inversion_project/atm_co2/splco2_cis92a.dat .   ln -sf ../ocean_inversion_project/atm_co2/splco2_cis92a.dat .
# Line 148  the global_ocean.90x40x15 configuration. Line 163  the global_ocean.90x40x15 configuration.
163    
164  ======================================================  ======================================================
165    
166    ==========================================================
167    Instructions for generating netcdf output files on orion
168    ==========================================================
169    
170    cd ocean_inversion_project/write_netCDF
171    setenv F_UFMTENDIAN big
172    
173    (check that defaults in  mk_output.F are appropriate)
174    
175    efc -W0 -WB mk_output.F write_nc_phys.F nc_util.F \
176         handle_errors.F write_nc_basisfnctns.F \
177         write_nc_diag_0D.F write_nc_diag_2D.F \
178         -I/u2/dmenem/software/netcdf-3.5.0/include \
179         -L/u2/dmenem/software/netcdf-3.5.0/lib -lnetcdf
180    a.out
181    
182    
183    ======================================================
184    
185  % some matlab code for looking at fort.10 debug files  % some matlab code for looking at fort.10 debug files
186  load fort.10  load fort.10
187  tak=zeros(90,40,12);  tak=zeros(90,40,12);
# Line 188  for i=1:30, mydisp(i) Line 222  for i=1:30, mydisp(i)
222   end   end
223  end  end
224  plot(1:30,0*sumtracer,1:30,sumtracer)  plot(1:30,0*sumtracer,1:30,sumtracer)
225    
226    
227    % check that tracer flux is 1e18 mols / year
228    nb_seconds_per_year=31556880;
229    lon=2:4:360; lat=-78:4:78;
230    mask=readbin('hFacC.data',[90 40 15],1);
231    tracer=zeros(90,40,30); sumtracer=zeros(30,1);
232    for i=1:30, mydisp(i)
233     fn=['PtrFlux' myint2str(i) '.0000000180.data'];
234     tracer(:,:,i)=readbin(fn,[90 40],1);
235     for j=1:length(lat)
236        sumtracer(i) = sumtracer(i) + sum(tracer(:,j,i).*mask(:,j,1)) * ...
237            nb_seconds_per_year* (4*1.113195e+05)^2 * cos(pi*lat(j)/180);
238      end
239    end
240    plot(1:30,0*sumtracer,1:30,sumtracer-mmean(sumtracer))
Legend:
Removed from v.1.12  
changed lines
  Added in v.1.21
  ViewVC Help
Powered by ViewVC 1.1.22