/[MITgcm]/MITgcm_contrib/ocean_inversion_project/README
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revision 1.8 by dimitri, Sat Sep 27 07:45:51 2003 UTC revision 1.26 by dimitri, Thu Nov 4 13:22:09 2004 UTC
# Line 20  salinity initial and boundary conditions Line 20  salinity initial and boundary conditions
20    
21  1 ===> get MITgcm code from cvs repository  1 ===> get MITgcm code from cvs repository
22    
23   CVSROOT=:pserver:cvsanon@mitgcm.org:/u/u0/gcmpack   cvs co -r checkpoint51n_branch MITgcm_code
24   cvs login ( CVS password: cvsanon )   cvs co -r checkpoint51n_branch MITgcm/verification/testreport
25   cvs co MITgcm   cvs co -r checkpoint51n_branch MITgcm/verification/global_with_exf
26    
27  2 ===> put MITgcm_contrib/ocean_inversion_project in MITgcm directory  2 ===> put MITgcm_contrib/ocean_inversion_project in MITgcm directory
28    
# Line 31  salinity initial and boundary conditions Line 31  salinity initial and boundary conditions
31    
32  3 ===> compile and link  3 ===> compile and link
33    
34     mkdir bin exe
35   cd bin   cd bin
36   cp ../verification/global_with_exf/code/* .   \cp ../verification/global_with_exf/code/* .
37   cp ../ocean_inversion_project/code/.genmakerc .   \cp ../ocean_inversion_project/code/* .
38   cp ../ocean_inversion_project/code/* .   \rm ptracers_*.F PTRACERS_OPTIONS.h
39   rm ptracers_*.F   ../tools/genmake2
40   ../tools/genmake     (on orion:    ../tools/genmake2 -of linux_ia64_efc+mpi       )
41       (on columbia: ../tools/genmake2 -of linux_ia64_efc+mpi_altix )
42   make depend   make depend
43   make   make -j 16
44    
45  4 ===> execute  4 ===> execute
46    
47   cd ../exe   cd ../exe
48   cp ../verification/global_with_exf/input/eedata .   \cp ../verification/global_with_exf/input/eedata .
49   cp ../verification/global_with_exf/input/data.* .   \cp ../verification/global_with_exf/input/data.* .
50   cp ../verification/global_with_exf/input/POLY3.COEFFS .   \cp ../verification/global_with_exf/input/POLY3.COEFFS .
51   ln -sf ../verification/global_with_exf/input/*.bin .   \ln -sf ../verification/global_with_exf/input/*.bin .
52   cp ../ocean_inversion_project/input/* .   \cp ../ocean_inversion_project/input/* .
53   cp data.test data   \cp data.test data
54   cp data.ptracers.test data.ptracers   \cp data.ptracers.test data.ptracers
55   mitgcmuv > output.txt   ./mitgcmuv >! output.txt
56      
57  5 ===> check that PTRACER output and salinity output are identical.  5 ===> check that PTRACER output and salinity output are identical.
58    
59   diff PTRACER01.0000000020.001.001.data S.0000000020.001.001.data   diff PTRACER01.0000000020.001.001.data S.0000000020.001.001.data
60   diff PTRACER30.0000000020.001.001.data S.0000000020.001.001.data   diff PTRACER30.0000000020.001.001.data S.0000000020.001.001.data
61     diff PTRtave30.0000000020.001.001.data Stave.0000000020.001.001.data
62     diff PTRtave30.0000000020.001.001.data Stave.0000000020.001.001.data
63    
64    
65  ==========================================================  ==========================================================
66  Instructions for carrying out a 3000-year quasi-stationary  MPI instructions for carrying out a 3000-year quasi-stationary
67  integration using the global_ocean.90x40x15 configuration.  integration using the global_ocean.90x40x15 configuration.
68  ==========================================================  ==========================================================
69    
 1 ===> compile, link, and execute  
   
70   cd MITgcm/exe   cd MITgcm/exe
71   rm *   rm *
72   cd ../bin   cd ../bin
73   rm *   rm *
74   cp ../verification/global_with_exf/code/* .   cp ../verification/global_with_exf/code/* .
  cp ../ocean_inversion_project/code/.genmakerc .  
75   cp ../ocean_inversion_project/code/* .   cp ../ocean_inversion_project/code/* .
76   ../tools/genmake   rm PTRACERS_OPTIONS.h
77     cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
78     cp SIZE.h_mpi SIZE.h
79     ../tools/genmake2
80       (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi)
81   make depend   make depend
82   make   make
83   cd ../exe   cd ../exe
# Line 83  integration using the global_ocean.90x40 Line 88  integration using the global_ocean.90x40
88   cp ../ocean_inversion_project/input/* .   cp ../ocean_inversion_project/input/* .
89   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
90   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
91   mitgcmuv > output .txt &   cp data.stationary.1 data
92     mpirun -np 24 dplace -s1 mitgcmuv < /dev/null > & ! errlog &
93       (on orion: qsub job.orion)
94    
95    
96  ==========================================================  ==========================================================
97  MPI instructions for carrying out a 3000-year quasi-stationary  MPI instructions for carrying out time-dependent, 1765-2005,
98  integration using the global_ocean.90x40x15 configuration.  anthropogenic carbon perturbation tracer experiments using
99    the global_ocean.90x40x15 configuration.
100  ==========================================================  ==========================================================
101    
 1 ===> compile, link, and execute  
   
102   cd MITgcm/exe   cd MITgcm/exe
103   rm *   rm *
104   cd ../bin   cd ../bin
105   rm *   rm *
106   cp ../verification/global_with_exf/code/* .   cp ../verification/global_with_exf/code/* .
  cp ../ocean_inversion_project/code/.genmakerc .  
107   cp ../ocean_inversion_project/code/* .   cp ../ocean_inversion_project/code/* .
108   cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h   cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
109   cp SIZE.h_mpi SIZE.h   cp SIZE.h_mpi SIZE.h
110   ../tools/genmake   ../tools/genmake2
111       (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi)
112   make depend   make depend
113   make   make
114   cd ../exe   cd ../exe
# Line 111  integration using the global_ocean.90x40 Line 117  integration using the global_ocean.90x40
117   cp ../verification/global_with_exf/input/POLY3.COEFFS .   cp ../verification/global_with_exf/input/POLY3.COEFFS .
118   ln -sf ../verification/global_with_exf/input/*.bin .   ln -sf ../verification/global_with_exf/input/*.bin .
119   cp ../ocean_inversion_project/input/* .   cp ../ocean_inversion_project/input/* .
120     cp data.1765-2005 data
121   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
122   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
123   mpirun -np 36 dplace -s1 -c25-60 mitgcmuv < /dev/null > & ! errlog &   ln -sf ../ocean_inversion_project/atm_co2/splco2_cis92a.dat .
124     mpirun -np 24 dplace -s1 mitgcmuv < /dev/null > & ! errlog &
125       (on orion: qsub job.orion.td)
126    
127    
128    ==========================================================
129    Instructions for carrying out time-dependent, 1765-2005,
130    anthropogenic carbon perturbation tracer experiments using
131    global_ocean.90x40x15 configuration and netcdf output.
132    This assumes that the appropriate libnetcdf.a exists
133    and that it be specified in the genmake2 option file.
134    ==========================================================
135    
136     cd MITgcm/exe
137     rm *
138     cd ../bin
139     rm *
140     cp ../verification/global_with_exf/code/* .
141     cp ../ocean_inversion_project/code/* .
142     cp PTRACERS_OPTIONS.h.netcdf PTRACERS_OPTIONS.h
143     cp ../ocean_inversion_project/write_netCDF/*  .
144     \rm mk_output.F
145    
146    ### need customized option file; example below is for nireas
147     ../tools/genmake2 -of linux_ia32_g77_netcdf
148    
149     make depend
150     make
151     cd ../exe
152     cp ../verification/global_with_exf/input/eedata .
153     cp ../verification/global_with_exf/input/data.* .
154     cp ../verification/global_with_exf/input/POLY3.COEFFS .
155     ln -sf ../verification/global_with_exf/input/*.bin .
156     cp ../ocean_inversion_project/input/* .
157     cp data.1765-2005.1 data
158     ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
159     ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
160     ln -sf ../ocean_inversion_project/atm_co2/splco2_cis92a.dat .
161     mitgcmuv > output .txt &
162    
163    
164    ==========================================================
165    Instructions for carrying out time-dependent, 1765-2005,
166    anthropogenic carbon perturbation tracer experiments using
167    the ecco1x1 configuration and netcdf output on columbia.
168    This assumes that the appropriate libnetcdf.a exists
169    and that it be specified in the genmake2 option file.
170    It also assumes that surface forcing files are available
171    in /nobackup2/menemenl/ocmip/iter69
172    ==========================================================
173    
174     cd MITgcm/exe
175     \rm *
176     cd ../bin
177     \rm *
178     \cp ../ocean_inversion_project/code_ecco1x1/* .
179     \cp ../ocean_inversion_project/write_netCDF/*  .
180     \rm mk_output.F
181     \cp SIZE.h.96 SIZE.h
182     ../tools/genmake2 -of linux_ia64_efc+mpi_altix
183     make depend
184     make -j 16
185     cd ../exe
186     \cp ../ocean_inversion_project/input_ecco1x1/* .
187     ln -sf ../../iter69/* .
188     ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
189     ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
190     ln -sf ../ocean_inversion_project/atm_co2/splco2_cis92a.dat .
191     qsub job01
192    
193    
194    ==========================================================
195    Instructions for generating netcdf output files on columbia
196    ==========================================================
197    
198    cd ocean_inversion_project/write_netCDF
199    setenv F_UFMTENDIAN big
200    
201    (check that defaults in  mk_output.F are appropriate)
202    
203    efc -W0 -WB mk_output.F write_nc_phys.F nc_util.F \
204         handle_errors.F write_nc_basisfnctns.F \
205         write_nc_diag_0D.F write_nc_diag_2D.F \
206         -I/u/menemenl/software/netcdf-3.5.0/include \
207         -L/u/menemenl/software/netcdf-3.5.0/lib -lnetcdf
208    ./a.out
209    
210    
211    ==========================================================
212    Instructions for generating netcdf output files on orion
213    ==========================================================
214    
215    cd ocean_inversion_project/write_netCDF
216    setenv F_UFMTENDIAN big
217    
218    (check that defaults in  mk_output.F are appropriate)
219    
220    efc -W0 -WB mk_output.F write_nc_phys.F nc_util.F \
221         handle_errors.F write_nc_basisfnctns.F \
222         write_nc_diag_0D.F write_nc_diag_2D.F \
223         -I/u2/dmenem/software/netcdf-3.5.0/include \
224         -L/u2/dmenem/software/netcdf-3.5.0/lib -lnetcdf
225    ./a.out
226    
227    
228  ======================================================  ======================================================
# Line 158  for i=1:30, mydisp(i) Line 267  for i=1:30, mydisp(i)
267   end   end
268  end  end
269  plot(1:30,0*sumtracer,1:30,sumtracer)  plot(1:30,0*sumtracer,1:30,sumtracer)
270    
271    
272    % check that tracer flux is 1e18 mols / year
273    nb_seconds_per_year=31556880;
274    lon=2:4:360; lat=-78:4:78;
275    mask=readbin('hFacC.data',[90 40 15],1);
276    tracer=zeros(90,40,30); sumtracer=zeros(30,1);
277    for i=1:30, mydisp(i)
278     fn=['PtrFlux' myint2str(i) '.0000000180.data'];
279     tracer(:,:,i)=readbin(fn,[90 40],1);
280     for j=1:length(lat)
281        sumtracer(i) = sumtracer(i) + sum(tracer(:,j,i).*mask(:,j,1)) * ...
282            nb_seconds_per_year* (4*1.113195e+05)^2 * cos(pi*lat(j)/180);
283      end
284    end
285    plot(1:30,0*sumtracer,1:30,sumtracer-mmean(sumtracer))
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