/[MITgcm]/MITgcm_contrib/ocean_inversion_project/README
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revision 1.15 by dimitri, Tue Oct 28 00:35:54 2003 UTC revision 1.20 by dimitri, Thu Dec 18 06:11:14 2003 UTC
# Line 22  salinity initial and boundary conditions Line 22  salinity initial and boundary conditions
22    
23   CVSROOT=:pserver:cvsanon@mitgcm.org:/u/u0/gcmpack   CVSROOT=:pserver:cvsanon@mitgcm.org:/u/u0/gcmpack
24   cvs login ( CVS password: cvsanon )   cvs login ( CVS password: cvsanon )
25   cvs co -P MITgcm -r checkpoint51n_branch   cvs co -r checkpoint51n_branch MITgcm
26    
27  2 ===> put MITgcm_contrib/ocean_inversion_project in MITgcm directory  2 ===> put MITgcm_contrib/ocean_inversion_project in MITgcm directory
28    
# Line 86  integration using the global_ocean.90x40 Line 86  integration using the global_ocean.90x40
86   cp ../ocean_inversion_project/input/* .   cp ../ocean_inversion_project/input/* .
87   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
88   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
89   mpirun -np 24 dplace -s1 -c3-38 mitgcmuv < /dev/null > & ! errlog &   cp data.stationary.1 data
90     mpirun -np 24 dplace -s1 mitgcmuv < /dev/null > & ! errlog &
91       (on orion: qsub job.orion)
92    
93  ==========================================================  ==========================================================
94  Instructions for carrying out time-dependent, 1765-2005,  MPI instructions for carrying out time-dependent, 1765-2005,
95  anthropogenic carbon perturbation tracer experiments using  anthropogenic carbon perturbation tracer experiments using
96  the global_ocean.90x40x15 configuration.  the global_ocean.90x40x15 configuration.
97  ==========================================================  ==========================================================
# Line 101  the global_ocean.90x40x15 configuration. Line 102  the global_ocean.90x40x15 configuration.
102   rm *   rm *
103   cp ../verification/global_with_exf/code/* .   cp ../verification/global_with_exf/code/* .
104   cp ../ocean_inversion_project/code/* .   cp ../ocean_inversion_project/code/* .
105     cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
106     cp SIZE.h_mpi SIZE.h
107   ../tools/genmake2   ../tools/genmake2
108     (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi)     (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi)
109   make depend   make depend
# Line 115  the global_ocean.90x40x15 configuration. Line 118  the global_ocean.90x40x15 configuration.
118   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
119   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
120   ln -sf ../ocean_inversion_project/atm_co2/splco2_cis92a.dat .   ln -sf ../ocean_inversion_project/atm_co2/splco2_cis92a.dat .
121   mitgcmuv > output .txt &   mpirun -np 24 dplace -s1 mitgcmuv < /dev/null > & ! errlog &
122       (on orion: qsub job.orion.td)
123    
124    
125  ==========================================================  ==========================================================
# Line 134  and that it be specified in the genmake2 Line 138  and that it be specified in the genmake2
138   cp ../ocean_inversion_project/code/* .   cp ../ocean_inversion_project/code/* .
139   cp PTRACERS_OPTIONS.h.netcdf PTRACERS_OPTIONS.h   cp PTRACERS_OPTIONS.h.netcdf PTRACERS_OPTIONS.h
140   cp ../ocean_inversion_project/write_netCDF/*  .   cp ../ocean_inversion_project/write_netCDF/*  .
141     \rm mk_output.F
142    
143  ### need customized option file; example below is for nireas  ### need customized option file; example below is for nireas
144   ../tools/genmake2 -of linux_ia32_g77_netcdf   ../tools/genmake2 -of linux_ia32_g77_netcdf
# Line 146  and that it be specified in the genmake2 Line 151  and that it be specified in the genmake2
151   cp ../verification/global_with_exf/input/POLY3.COEFFS .   cp ../verification/global_with_exf/input/POLY3.COEFFS .
152   ln -sf ../verification/global_with_exf/input/*.bin .   ln -sf ../verification/global_with_exf/input/*.bin .
153   cp ../ocean_inversion_project/input/* .   cp ../ocean_inversion_project/input/* .
154   cp data.1765-2005 data   cp data.1765-2005.1 data
155   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .   ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
156   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .   ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
157   ln -sf ../ocean_inversion_project/atm_co2/splco2_cis92a.dat .   ln -sf ../ocean_inversion_project/atm_co2/splco2_cis92a.dat .
# Line 154  and that it be specified in the genmake2 Line 159  and that it be specified in the genmake2
159    
160    
161  ======================================================  ======================================================
162    
163    ==========================================================
164    Instructions for generating netcdf output files on orion
165    ==========================================================
166    
167    cd ocean_inversion_project/write_netCDF
168    setenv F_UFMTENDIAN big
169    
170    (check that defaults in  mk_output.F are appropriate)
171    
172    efc -W0 -WB mk_output.F write_nc_phys.F nc_util.F \
173         handle_errors.F write_nc_basisfnctns.F \
174         write_nc_diag_0D.F write_nc_diag_2D.F \
175         -I/u2/dmenem/software/netcdf-3.5.0/include \
176         -L/u2/dmenem/software/netcdf-3.5.0/lib -lnetcdf
177    a.out
178    
179    
180    ======================================================
181    
182  % some matlab code for looking at fort.10 debug files  % some matlab code for looking at fort.10 debug files
183  load fort.10  load fort.10
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