| 1 |
dimitri |
1.1 |
Ocean Inversion Project |
| 2 |
|
|
======================= |
| 3 |
|
|
|
| 4 |
|
|
Instructions for using pkg/ptracers to compute tracer |
| 5 |
|
|
Green's functions for Gruber's ocean inversion project |
| 6 |
dimitri |
1.3 |
(see quercus.igpp.ucla.edu/OceanInversion/ for details). |
| 7 |
|
|
|
| 8 |
|
|
Preprocessed OceanInversion input files are available |
| 9 |
|
|
under directories region_mask, takahashi, and |
| 10 |
|
|
atm_co2 in this package. All netcdf input files |
| 11 |
|
|
have been converted to binary format in order to avoid |
| 12 |
|
|
having to link netcdf library with MITgcm code. See |
| 13 |
|
|
respective README files in each directory for details. |
| 14 |
dimitri |
1.1 |
|
| 15 |
|
|
|
| 16 |
dimitri |
1.2 |
=============================================== |
| 17 |
|
|
First check that pkg/ptracers works OK by using |
| 18 |
|
|
salinity initial and boundary conditions |
| 19 |
|
|
=============================================== |
| 20 |
|
|
|
| 21 |
|
|
1 ===> get MITgcm code from cvs repository |
| 22 |
|
|
|
| 23 |
|
|
CVSROOT=:pserver:cvsanon@mitgcm.org:/u/u0/gcmpack |
| 24 |
|
|
cvs login ( CVS password: cvsanon ) |
| 25 |
|
|
cvs co MITgcm |
| 26 |
|
|
|
| 27 |
|
|
2 ===> put MITgcm_contrib/ocean_inversion_project in MITgcm directory |
| 28 |
|
|
|
| 29 |
|
|
cd MITgcm |
| 30 |
|
|
cvs co -d ocean_inversion_project MITgcm_contrib/ocean_inversion_project |
| 31 |
|
|
|
| 32 |
dimitri |
1.3 |
3 ===> compile and link |
| 33 |
dimitri |
1.2 |
|
| 34 |
|
|
cd bin |
| 35 |
|
|
cp ../verification/global_with_exf/code/* . |
| 36 |
|
|
cp ../ocean_inversion_project/code/.genmakerc . |
| 37 |
|
|
cp ../ocean_inversion_project/code/* . |
| 38 |
dimitri |
1.4 |
rm ptracers_init.F ptracers_forcing_surf.F PTRACERS.h |
| 39 |
|
|
rm ptracers_read_mask.F ptracers_read_takahashi.F |
| 40 |
dimitri |
1.2 |
../tools/genmake |
| 41 |
|
|
make depend |
| 42 |
|
|
make |
| 43 |
|
|
|
| 44 |
|
|
4 ===> execute |
| 45 |
|
|
|
| 46 |
|
|
cd ../exe |
| 47 |
dimitri |
1.3 |
cp ../verification/global_with_exf/input/eedata . |
| 48 |
|
|
cp ../verification/global_with_exf/input/data.* . |
| 49 |
|
|
cp ../verification/global_with_exf/input/POLY3.COEFFS . |
| 50 |
|
|
ln -sf ../verification/global_with_exf/input/*.bin . |
| 51 |
dimitri |
1.2 |
cp ../ocean_inversion_project/input/* . |
| 52 |
dimitri |
1.3 |
cp data.test data |
| 53 |
|
|
cp data.ptracers.test data.ptracers |
| 54 |
dimitri |
1.4 |
mitgcmuv > output.txt |
| 55 |
dimitri |
1.2 |
|
| 56 |
dimitri |
1.5 |
5 ===> check that PTRACER output and salinity output are identical. |
| 57 |
dimitri |
1.2 |
|
| 58 |
|
|
diff PTRACER01.0000000020.001.001.data S.0000000020.001.001.data |
| 59 |
|
|
diff PTRACER30.0000000020.001.001.data S.0000000020.001.001.data |
| 60 |
|
|
|
| 61 |
|
|
|
| 62 |
dimitri |
1.3 |
========================================================== |
| 63 |
|
|
Instructions for carrying out a 3000-year quasi-stationary |
| 64 |
|
|
integration using the global_ocean.90x40x15 configuration. |
| 65 |
|
|
========================================================== |
| 66 |
|
|
|
| 67 |
|
|
1 ===> compile, link, and execute |
| 68 |
|
|
|
| 69 |
|
|
cd MITgcm/exe |
| 70 |
|
|
rm * |
| 71 |
|
|
cd ../bin |
| 72 |
|
|
rm * |
| 73 |
dimitri |
1.1 |
cp ../verification/global_with_exf/code/* . |
| 74 |
dimitri |
1.3 |
cp ../ocean_inversion_project/code/.genmakerc . |
| 75 |
|
|
cp ../ocean_inversion_project/code/* . |
| 76 |
dimitri |
1.1 |
../tools/genmake |
| 77 |
|
|
make depend |
| 78 |
|
|
make |
| 79 |
|
|
cd ../exe |
| 80 |
dimitri |
1.3 |
cp ../verification/global_with_exf/input/eedata . |
| 81 |
|
|
cp ../verification/global_with_exf/input/data.* . |
| 82 |
|
|
cp ../verification/global_with_exf/input/POLY3.COEFFS . |
| 83 |
|
|
ln -sf ../verification/global_with_exf/input/*.bin . |
| 84 |
|
|
cp ../ocean_inversion_project/input/* . |
| 85 |
|
|
ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin . |
| 86 |
|
|
ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin . |
| 87 |
|
|
mitgcmuv > output .txt & |
| 88 |
|
|
|
| 89 |
dimitri |
1.1 |
|
| 90 |
dimitri |
1.3 |
====================================================== |
| 91 |
dimitri |
1.1 |
|
| 92 |
dimitri |
1.3 |
% some matlab code for looking at fort.10 debug files |
| 93 |
|
|
load fort.10 |
| 94 |
|
|
tak=zeros(90,40,12); |
| 95 |
|
|
for n=1:length(fort) |
| 96 |
|
|
m=fort(n,1); i=fort(n,2); j=fort(n,3); |
| 97 |
|
|
if i>0&i<91&j>0&j<41, tak(i,j,m)=fort(n,4); end |
| 98 |
|
|
end |
| 99 |
|
|
lon=2:4:360; lat=-78:4:78; |
| 100 |
|
|
clf, contourf(lon,lat,mean(tak(:,:,1),3)',-10:10) |
| 101 |
|
|
caxis([-6 6]), colorbar, plotland |
| 102 |
|
|
|
| 103 |
|
|
% some matlab code for looking at PTRACER output files |
| 104 |
dimitri |
1.4 |
salt=readbin('S.0000000020.001.001.data',[90 40 15],1); |
| 105 |
dimitri |
1.3 |
tracer=zeros(90,40,15,30); |
| 106 |
|
|
for i=1:30 |
| 107 |
|
|
fn=['PTRACER' myint2str(i) '.0000000020.001.001.data']; |
| 108 |
|
|
tracer(:,:,:,i)=readbin(fn,[90 40 15],1); |
| 109 |
|
|
clf, mypcolor(tracer(:,:,1,i)'); pause(1) |
| 110 |
|
|
end |
| 111 |
|
|
tmp=sum(tracer,4); clf, mypcolor(tmp(:,:,1)') |
| 112 |
dimitri |
1.4 |
mypcolor( |
| 113 |
|
|
|
| 114 |
dimitri |
1.3 |
|
| 115 |
|
|
% some matlab code for checking that one year's worth of |
| 116 |
|
|
% tracer uptake is approximately 1e18 mols. |
| 117 |
|
|
lon=2:4:360; lat=-78:4:78; |
| 118 |
|
|
thk=[50 70 100 140 190 240 290 340 390 440 490 540 590 640 690]; |
| 119 |
|
|
tracer=zeros(90,40,15,30); sumtracer1=zeros(30,1); |
| 120 |
|
|
for i=1:30, mydisp(i) |
| 121 |
|
|
fn=['PTRACER' myint2str(i) '.0000000180.001.001.data']; |
| 122 |
|
|
tracer(:,:,:,i)=readbin(fn,[90 40 15],1); |
| 123 |
|
|
for x=1:length(lon) |
| 124 |
|
|
for y=1:length(lat) |
| 125 |
|
|
for z=1:length(thk) |
| 126 |
|
|
sumtracer1(i) = sumtracer1(i) + tracer(x,y,z,i) * ... |
| 127 |
|
|
thk(z) * (4*1.113195e+05)^2 * cos(pi*lat(y)/180); |
| 128 |
|
|
end |
| 129 |
|
|
end |
| 130 |
dimitri |
1.1 |
end |
| 131 |
dimitri |
1.3 |
end |
| 132 |
dimitri |
1.1 |
|
| 133 |
dimitri |
1.3 |
% some matlab code for checking that one year's worth of |
| 134 |
|
|
% tracer uptake is approximately 1e18 mols. |
| 135 |
|
|
lon=2:4:360; lat=-78:4:78; |
| 136 |
|
|
thk=[50 70 100 140 190 240 290 340 390 440 490 540 590 640 690]; |
| 137 |
|
|
tracer=zeros(90,40,15,30); sumtracer=zeros(30,1); |
| 138 |
|
|
for i=1:30, mydisp(i) |
| 139 |
dimitri |
1.4 |
fn=['PTRACER' myint2str(i) '.0000003600.001.001.data']; |
| 140 |
dimitri |
1.3 |
tracer(:,:,:,i)=readbin(fn,[90 40 15],1); |
| 141 |
|
|
for j=1:length(lat) |
| 142 |
|
|
for k=1:length(thk) |
| 143 |
|
|
sumtracer(i) = sumtracer(i) + sum(tracer(:,j,k,i)) * ... |
| 144 |
|
|
thk(k) * (4*1.113195e+05)^2 * cos(pi*lat(j)/180); |
| 145 |
|
|
end |
| 146 |
dimitri |
1.1 |
end |
| 147 |
dimitri |
1.3 |
end |
| 148 |
dimitri |
1.4 |
plot(1:30,0*sumtracer,1:30,sumtracer) |
Parent Directory
| 
Revision Log
| 
Revision Graph