/[MITgcm]/MITgcm_contrib/nesting_sannino/utils/notes_run
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revision 1.1 by jmc, Sun Nov 28 17:59:03 2010 UTC revision 1.2 by jmc, Mon Dec 6 19:23:23 2010 UTC
# Line 1  Line 1 
1  To run on beagle.darwinproject.mit.edu :  To run on beagle.darwinproject.mit.edu :
2    
3  #-- where executables have been built:  #-- where executables have been built:
4  #   (see file 'utils/notes_bld' on how to build)  #   (see file 'utils/notes_bld' on how to build)
5  BLD_DIR=~jmc/mitgcm/MITgcm/verification/nesting  BLD_DIR=~jmc/mitgcm/MITgcm/verification/nesting
6    
7  #-- where to run:  #-- where to run:
# Line 16  Note: 1) driver is still using hard-code Line 16  Note: 1) driver is still using hard-code
16    
17  cd $RUN_DIR  cd $RUN_DIR
18    
19  cvs co -P -d input  MITgcm_contrib/nesting_sannino/input  cvs co -P -d input   MITgcm_contrib/nesting_sannino/input
20  cvs co -P -d params MITgcm_contrib/nesting_sannino/params  cvs co -P -d params  MITgcm_contrib/nesting_sannino/params
21  cvs co -P -d utils  MITgcm_contrib/nesting_sannino/utils  cvs co -P -d utils   MITgcm_contrib/nesting_sannino/utils
22    cvs co -P -d results MITgcm_contrib/nesting_sannino/results
23    
24  ( mkdir run_driv run_med run_gib )  ( mkdir run_driv run_med run_gib )
25    
# Line 42  cd .. Line 43  cd ..
43  #-- on beagle:  #-- on beagle:
44  > qrsh -pe mpich_mx 64  > qrsh -pe mpich_mx 64
45    
 then do "qstat" to get the job number: JOB_IB  
   
46  #-- on compute node:  #-- on compute node:
47  > module load mitgcm  > module load mitgcm
48    
49  #- get the file which contains the list of nodes:  #- get the file which contains the list of nodes:
50  > ls -l /tmp/$JOB_ID.1.darwin/machines  #  ^== No longer needed: done within mk_pgfile.sh
51    # ls -l /tmp/$JOB_ID.1.darwin/machines
52    
53  > cd $RUN_DIR  > cd $RUN_DIR
54    
55  #- to make "pgfile":  #- to make "pgfile":
56  > utils/mk_pgfile.sh /tmp/$JOB_ID.1.darwin/machines  > utils/mk_pgfile.sh
57    
58  #- to run:  #- to run:
59  > mpirun -pg pgfile -np 64 $RUN_DIR/run_driv/mitgcmuv >& std_outp  > mpirun -pg pgfile -np 64 $RUN_DIR/run_driv/mitgcmuv >& std_outp
60    
 # Note: Until now, this command will not finish since the driver does not know  
 #       many iterations to do. Needs to kill (or Ctrl C) the mpirun process  
 #       when parent and child are done.  
   
61  #- to save all the output in new dir "res_new"  #- to save all the output in new dir "res_new"
62  > utils/move_nest_outp res_new  > utils/move_nest_outp res_new
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