Annotation of /MITgcm_contrib/nesting_sannino/utils/notes_run

To run on beagle.darwinproject.mit.edu :

#-- where executables have been built:
#   (see file 'utils/notes_bld' on how to build)
BLD_DIR=~jmc/mitgcm/MITgcm/verification/nesting

#-- where to run:
RUN_DIR=/scratch/jmc/nesting
(mkdir $RUN_DIR)

#==== set-up: ====
Note: 1) driver is still using hard-coded absolute path
      (to /home/sannino/NESTING/ , subdir: PARENT/ & CHILD/ )
      to read parent and chilf grid files for parent <--> child interpolation
      2) forcing is over simplified to minimise Nb/size of input files.

cd $RUN_DIR

cvs co -P -d input   MITgcm_contrib/nesting_sannino/input
cvs co -P -d params  MITgcm_contrib/nesting_sannino/params
cvs co -P -d utils   MITgcm_contrib/nesting_sannino/utils
cvs co -P -d results MITgcm_contrib/nesting_sannino/results

( mkdir run_driv run_med run_gib )

cd run_driv
  ln -s $BLD_DIR/bld_driver/mitgcmuv .
cd ..

cd run_med
  ln -s $BLD_DIR/bld_parent/mitgcmuv .
  ln -s ../input/med/* .
  ln -s ../params/med/* .
cd ..

cd run_gib
  ln -s $BLD_DIR/bld_child/mitgcmuv .
  ln -s ../input/gib/* .
  ln -s ../params/gib/* .
cd ..

#==== running: ====
#-- on beagle:
> qrsh -pe mpich_mx 64

#-- on compute node:
> module load mitgcm

#- get the file which contains the list of nodes:
#  ^== No longer needed: done within mk_pgfile.sh
# ls -l /tmp/$JOB_ID.1.darwin/machines

> cd $RUN_DIR

#- to make "pgfile":
> utils/mk_pgfile.sh

#- to run:
> mpirun -pg pgfile -np 64 $RUN_DIR/run_driv/mitgcmuv >& std_outp

#- to save all the output in new dir "res_new"
> utils/move_nest_outp res_new
1	jmc	1.1	To run on beagle.darwinproject.mit.edu :
2
3			#-- where executables have been built:
4	jmc	1.2	# (see file 'utils/notes_bld' on how to build)
5	jmc	1.1	BLD_DIR=~jmc/mitgcm/MITgcm/verification/nesting
6
7			#-- where to run:
8			RUN_DIR=/scratch/jmc/nesting
9			(mkdir $RUN_DIR)
10
11			#==== set-up: ====
12			Note: 1) driver is still using hard-coded absolute path
13			(to /home/sannino/NESTING/ , subdir: PARENT/ & CHILD/ )
14			to read parent and chilf grid files for parent <--> child interpolation
15			2) forcing is over simplified to minimise Nb/size of input files.
16
17			cd $RUN_DIR
18
19	jmc	1.2	cvs co -P -d input MITgcm_contrib/nesting_sannino/input
20			cvs co -P -d params MITgcm_contrib/nesting_sannino/params
21			cvs co -P -d utils MITgcm_contrib/nesting_sannino/utils
22			cvs co -P -d results MITgcm_contrib/nesting_sannino/results
23	jmc	1.1
24			( mkdir run_driv run_med run_gib )
25
26			cd run_driv
27			ln -s $BLD_DIR/bld_driver/mitgcmuv .
28			cd ..
29
30			cd run_med
31			ln -s $BLD_DIR/bld_parent/mitgcmuv .
32			ln -s ../input/med/* .
33			ln -s ../params/med/* .
34			cd ..
35
36			cd run_gib
37			ln -s $BLD_DIR/bld_child/mitgcmuv .
38			ln -s ../input/gib/* .
39			ln -s ../params/gib/* .
40			cd ..
41
42			#==== running: ====
43			#-- on beagle:
44			> qrsh -pe mpich_mx 64
45
46			#-- on compute node:
47			> module load mitgcm
48	jmc	1.2
49	jmc	1.1	#- get the file which contains the list of nodes:
50	jmc	1.2	# ^== No longer needed: done within mk_pgfile.sh
51			# ls -l /tmp/$JOB_ID.1.darwin/machines
52	jmc	1.1
53			> cd $RUN_DIR
54
55			#- to make "pgfile":
56	jmc	1.2	> utils/mk_pgfile.sh
57	jmc	1.1
58			#- to run:
59			> mpirun -pg pgfile -np 64 $RUN_DIR/run_driv/mitgcmuv >& std_outp
60
61			#- to save all the output in new dir "res_new"
62			> utils/move_nest_outp res_new