/[MITgcm]/MITgcm_contrib/llc_hires/llc_90/readme.txt
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revision 1.3 by dimitri, Tue Oct 3 04:20:38 2017 UTC revision 1.7 by dimitri, Fri Feb 8 00:42:55 2019 UTC
# Line 6  qsub -I -q long -l select=6:ncpus=28:mod Line 6  qsub -I -q long -l select=6:ncpus=28:mod
6  module purge  module purge
7  module load comp-intel/2016.2.181 mpi-sgi/mpt.2.14r19 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt  module load comp-intel/2016.2.181 mpi-sgi/mpt.2.14r19 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
8    
9    # Get MITgcm from GitHub
10    #- method 1, using https:
11     git clone https://github.com/MITgcm/MITgcm.git
12    #- method 2, using ssh (requires a github account):
13     git clone git@github.com:MITgcm/MITgcm.git
14    
15    # Get MITgcm_contrib from CVS
16    cvs co MITgcm_contrib/llc_hires/llc_90
17    
18  ########################################  ########################################
19  # 30x30x96 configuration without asyncio  # 30x30x96 configuration without asyncio
 cd ~/geos5/asyncio  
 cvs co MITgcm_code  
 cvs co MITgcm_contrib/llc_hires/llc_90  
20  cd MITgcm  cd MITgcm
21  mkdir build run1  mkdir build run1
22  cd build  cd build
# Line 18  rm * Line 24  rm *
24  ../tools/genmake2 -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas \  ../tools/genmake2 -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas \
25   -mpi -mods ../../MITgcm_contrib/llc_hires/llc_90/code   -mpi -mods ../../MITgcm_contrib/llc_hires/llc_90/code
26  make depend  make depend
27  make -j 96  make -j 16
28  cp mitgcmuv ../run1  cp mitgcmuv ../run1
29  cd ../run1  cd ../run1
30  ln -sf /nobackup/dmenemen/GEOS5/experiments/llc90/data/* .  ln -sf /nobackup/dmenemen/GEOS5/experiments/llc90/data/* .
# Line 29  mpiexec -n 96 ./mitgcmuv Line 35  mpiexec -n 96 ./mitgcmuv
35    
36  #####################################  #####################################
37  # 30x30x96 configuration with asyncio  # 30x30x96 configuration with asyncio
38  cd ~/geos5/asyncio/MITgcm  cd ../../MITgcm
39  mkdir run2  mkdir run2
40  cd build  cd build
41  rm *  rm *
# Line 37  rm * Line 43  rm *
43   ../../MITgcm_contrib/llc_hires/llc_90/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \   ../../MITgcm_contrib/llc_hires/llc_90/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \
44   '../../MITgcm_contrib/llc_hires/llc_90/code ../../MITgcm_contrib/llc_hires/llc_90/code-async'   '../../MITgcm_contrib/llc_hires/llc_90/code ../../MITgcm_contrib/llc_hires/llc_90/code-async'
45  make depend  make depend
46  make -j 96  make -j 16
47  cp mitgcmuv ../run2  cp mitgcmuv ../run2
48  cd ../run2  cd ../run2
49  ln -sf /nobackup/dmenemen/GEOS5/experiments/llc90/data/* .  ln -sf /nobackup/dmenemen/GEOS5/experiments/llc90/data/* .
50  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
51  ln -sf /nobackupp2/dmenemen//llc_4320/run_template/runoff1p2472-360x180x12.bin .  ln -sf /nobackupp2/dmenemen//llc_4320/run_template/runoff1p2472-360x180x12.bin .
52  cp ../../MITgcm_contrib/llc_hires/llc_90/input/* .  cp ../../MITgcm_contrib/llc_hires/llc_90/input/* .
53    mv data_async data
54    mpiexec -n 124 ./mitgcmuv
55    
56    ############################################################
57    # 30x30x96 configuration with asyncio using readtile_mpiio.c
58    cd ../../MITgcm
59    mkdir run3
60    cd build
61    rm *
62    ../tools/genmake2 -of \
63     ../../MITgcm_contrib/llc_hires/llc_90/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \
64     '../../MITgcm_contrib/llc_hires/llc_90/code ../../MITgcm_contrib/llc_hires/llc_90/code-async'
65    make depend
66    make -j 16
67    cp mitgcmuv ../run3
68    cd ../run3
69    ln -sf /nobackup/dmenemen/GEOS5/experiments/llc90/data/* .
70    ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
71    ln -sf /nobackupp2/dmenemen//llc_4320/run_template/runoff1p2472-360x180x12.bin .
72    cp ../../MITgcm_contrib/llc_hires/llc_90/input/* .
73    mv data_async data
74    mpiexec -n 124 ./mitgcmuv
75    
76    ###################################################
77    # 30x30x96 configuration with asyncio and no seaice
78    mkdir run4
79    cd build
80    rm *
81    ../tools/genmake2 -of \
82     ../../MITgcm_contrib/llc_hires/llc_90/code-async/linux_amd64_ifort+mpi_ice_nas \
83      -mpi -mods ../../MITgcm_contrib/llc_hires/llc_90/code-async-noseaice
84    make depend
85    make -j 16
86    cp mitgcmuv ../run4
87    cd ../run4
88    ln -sf /nobackup/dmenemen/GEOS5/experiments/llc90/data/* .
89    ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
90    ln -sf /nobackupp2/dmenemen//llc_4320/run_template/runoff1p2472-360x180x12.bin .
91    cp ../../MITgcm_contrib/llc_hires/llc_90/input-noseaice/* .
92  mpiexec -n 124 ./mitgcmuv  mpiexec -n 124 ./mitgcmuv
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