/[MITgcm]/MITgcm_contrib/llc_hires/llc_90/readme.txt
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revision 1.1 by dimitri, Tue Oct 3 00:09:12 2017 UTC revision 1.7 by dimitri, Fri Feb 8 00:42:55 2019 UTC
# Line 1  Line 1 
1  # This is a small test case with set-up as similar as possible  # This is a small test case with set-up as similar as possible
2  # to llc_4320 for testing asyncio and coupling to GEOS-5.  # to llc_4320 for testing asyncio and coupling to GEOS-5.
3    
4  #############################  # request interactive nodes and load modules
5  # 30x30x96 configuration  qsub -I -q long -l select=6:ncpus=28:model=bro,walltime=120:00:00
   
6  module purge  module purge
7  module load comp-intel/2015.0.090 mpi-sgi/mpt.2.12r23 netcdf/4.0  module load comp-intel/2016.2.181 mpi-sgi/mpt.2.14r19 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
8  cd ~/llc_4320  
9  cvs co -r checkpoint65v MITgcm_code  # Get MITgcm from GitHub
10  cvs co MITgcm_contrib/llc_hires/llc_4320  #- method 1, using https:
11     git clone https://github.com/MITgcm/MITgcm.git
12    #- method 2, using ssh (requires a github account):
13     git clone git@github.com:MITgcm/MITgcm.git
14    
15    # Get MITgcm_contrib from CVS
16    cvs co MITgcm_contrib/llc_hires/llc_90
17    
18    ########################################
19    # 30x30x96 configuration without asyncio
20  cd MITgcm  cd MITgcm
21  mkdir build run485568  mkdir build run1
 lfs setstripe -c -1 run_485568  
22  cd build  cd build
23  rm *  rm *
24  cp ../../MITgcm_contrib/llc_hires/llc_4320/code/SIZE.h_90x90x19023 SIZE.h  ../tools/genmake2 -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas \
25  cp ../../MITgcm_contrib/llc_hires/llc_4320/code-async/readtile_mpiio.c .   -mpi -mods ../../MITgcm_contrib/llc_hires/llc_90/code
 emacs readtile_mpiio.c  
     tileSizeX = 90;  
     tileSizeY = 90;  
 ../tools/genmake2 -of \  
  ../../MITgcm_contrib/llc_hires/llc_4320/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \  
  '../../MITgcm_contrib/llc_hires/llc_4320/code ../../MITgcm_contrib/llc_hires/llc_4320/code-async'  
26  make depend  make depend
27  make -j 16  make -j 16
28  cp mitgcmuv ../run_485568/mitgcmuv_90x90x19023_intel.2015.0.090  cp mitgcmuv ../run1
29    cd ../run1
30    ln -sf /nobackup/dmenemen/GEOS5/experiments/llc90/data/* .
31    ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
32    ln -sf /nobackupp2/dmenemen//llc_4320/run_template/runoff1p2472-360x180x12.bin .
33    cp ../../MITgcm_contrib/llc_hires/llc_90/input/* .
34    mpiexec -n 96 ./mitgcmuv
35    
36  qsub -I -q long -l select=850:ncpus=24:model=has,walltime=120:00:00 -m abe -M menemenlis@me.com  #####################################
37  qsub -I -q long -l select=1020:ncpus=20:model=ivy,walltime=120:00:00 -m abe -M menemenlis@me.com  # 30x30x96 configuration with asyncio
38  module load comp-intel/2015.0.090 mpi-sgi/mpt.2.12r23 netcdf/4.0  cd ../../MITgcm
39  ln -sf /nobackup/dmenemen/tarballs/llc_4320/run_template/* .  mkdir run2
40    cd build
41    rm *
42    ../tools/genmake2 -of \
43     ../../MITgcm_contrib/llc_hires/llc_90/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \
44     '../../MITgcm_contrib/llc_hires/llc_90/code ../../MITgcm_contrib/llc_hires/llc_90/code-async'
45    make depend
46    make -j 16
47    cp mitgcmuv ../run2
48    cd ../run2
49    ln -sf /nobackup/dmenemen/GEOS5/experiments/llc90/data/* .
50  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
51  cp ../../MITgcm_contrib/llc_hires/llc_4320/input/* .  ln -sf /nobackupp2/dmenemen//llc_4320/run_template/runoff1p2472-360x180x12.bin .
52  cp data.exch2_90x90x19023 data.exch2  cp ../../MITgcm_contrib/llc_hires/llc_90/input/* .
53  mv STDOUT.00000 STDOUT.485568  mv data_async data
54  emacs data  mpiexec -n 124 ./mitgcmuv
  nIter0=485568,  
 ln -sf ../run/pickup_0000485568.data pickup.0000485568.data  
 ln -sf ../run/pickup_0000485568.meta pickup.0000485568.meta  
 ln -sf ../run/pickup_seaice_0000485568.data pickup_seaice.0000485568.data  
 ln -sf ../run/pickup_seaice_0000485568.meta pickup_seaice.0000485568.meta  
 mpiexec -n 20400 ./mitgcmuv_90x90x19023_intel.2015.0.090  
55    
56  cd ~/llc_4320/MITgcm/run_485568  ############################################################
57  tail -f STDOUT.00000 | grep advcfl_W  # 30x30x96 configuration with asyncio using readtile_mpiio.c
58    cd ../../MITgcm
59    mkdir run3
60    cd build
61    rm *
62    ../tools/genmake2 -of \
63     ../../MITgcm_contrib/llc_hires/llc_90/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \
64     '../../MITgcm_contrib/llc_hires/llc_90/code ../../MITgcm_contrib/llc_hires/llc_90/code-async'
65    make depend
66    make -j 16
67    cp mitgcmuv ../run3
68    cd ../run3
69    ln -sf /nobackup/dmenemen/GEOS5/experiments/llc90/data/* .
70    ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
71    ln -sf /nobackupp2/dmenemen//llc_4320/run_template/runoff1p2472-360x180x12.bin .
72    cp ../../MITgcm_contrib/llc_hires/llc_90/input/* .
73    mv data_async data
74    mpiexec -n 124 ./mitgcmuv
75    
76    ###################################################
77    # 30x30x96 configuration with asyncio and no seaice
78    mkdir run4
79    cd build
80    rm *
81    ../tools/genmake2 -of \
82     ../../MITgcm_contrib/llc_hires/llc_90/code-async/linux_amd64_ifort+mpi_ice_nas \
83      -mpi -mods ../../MITgcm_contrib/llc_hires/llc_90/code-async-noseaice
84    make depend
85    make -j 16
86    cp mitgcmuv ../run4
87    cd ../run4
88    ln -sf /nobackup/dmenemen/GEOS5/experiments/llc90/data/* .
89    ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
90    ln -sf /nobackupp2/dmenemen//llc_4320/run_template/runoff1p2472-360x180x12.bin .
91    cp ../../MITgcm_contrib/llc_hires/llc_90/input-noseaice/* .
92    mpiexec -n 124 ./mitgcmuv
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