/[MITgcm]/MITgcm_contrib/llc_hires/llc_90/readme.txt
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revision 1.1 by dimitri, Tue Oct 3 00:09:12 2017 UTC revision 1.4 by dimitri, Mon Oct 9 02:02:49 2017 UTC
# Line 1  Line 1 
1  # This is a small test case with set-up as similar as possible  # This is a small test case with set-up as similar as possible
2  # to llc_4320 for testing asyncio and coupling to GEOS-5.  # to llc_4320 for testing asyncio and coupling to GEOS-5.
3    
4  #############################  # request interactive nodes and load modules
5  # 30x30x96 configuration  qsub -I -q long -l select=6:ncpus=28:model=bro,walltime=120:00:00
   
6  module purge  module purge
7  module load comp-intel/2015.0.090 mpi-sgi/mpt.2.12r23 netcdf/4.0  module load comp-intel/2016.2.181 mpi-sgi/mpt.2.14r19 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
8  cd ~/llc_4320  
9  cvs co -r checkpoint65v MITgcm_code  ########################################
10  cvs co MITgcm_contrib/llc_hires/llc_4320  # 30x30x96 configuration without asyncio
11    cd ~/geos5/asyncio
12    cvs co MITgcm_code
13    cvs co MITgcm_contrib/llc_hires/llc_90
14  cd MITgcm  cd MITgcm
15  mkdir build run485568  mkdir build run1
 lfs setstripe -c -1 run_485568  
16  cd build  cd build
17  rm *  rm *
18  cp ../../MITgcm_contrib/llc_hires/llc_4320/code/SIZE.h_90x90x19023 SIZE.h  ../tools/genmake2 -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas \
19  cp ../../MITgcm_contrib/llc_hires/llc_4320/code-async/readtile_mpiio.c .   -mpi -mods ../../MITgcm_contrib/llc_hires/llc_90/code
 emacs readtile_mpiio.c  
     tileSizeX = 90;  
     tileSizeY = 90;  
 ../tools/genmake2 -of \  
  ../../MITgcm_contrib/llc_hires/llc_4320/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \  
  '../../MITgcm_contrib/llc_hires/llc_4320/code ../../MITgcm_contrib/llc_hires/llc_4320/code-async'  
20  make depend  make depend
21  make -j 16  make -j 16
22  cp mitgcmuv ../run_485568/mitgcmuv_90x90x19023_intel.2015.0.090  cp mitgcmuv ../run1
23    cd ../run1
24  qsub -I -q long -l select=850:ncpus=24:model=has,walltime=120:00:00 -m abe -M menemenlis@me.com  ln -sf /nobackup/dmenemen/GEOS5/experiments/llc90/data/* .
 qsub -I -q long -l select=1020:ncpus=20:model=ivy,walltime=120:00:00 -m abe -M menemenlis@me.com  
 module load comp-intel/2015.0.090 mpi-sgi/mpt.2.12r23 netcdf/4.0  
 ln -sf /nobackup/dmenemen/tarballs/llc_4320/run_template/* .  
25  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
26  cp ../../MITgcm_contrib/llc_hires/llc_4320/input/* .  ln -sf /nobackupp2/dmenemen//llc_4320/run_template/runoff1p2472-360x180x12.bin .
27  cp data.exch2_90x90x19023 data.exch2  cp ../../MITgcm_contrib/llc_hires/llc_90/input/* .
28  mv STDOUT.00000 STDOUT.485568  mpiexec -n 96 ./mitgcmuv
 emacs data  
  nIter0=485568,  
 ln -sf ../run/pickup_0000485568.data pickup.0000485568.data  
 ln -sf ../run/pickup_0000485568.meta pickup.0000485568.meta  
 ln -sf ../run/pickup_seaice_0000485568.data pickup_seaice.0000485568.data  
 ln -sf ../run/pickup_seaice_0000485568.meta pickup_seaice.0000485568.meta  
 mpiexec -n 20400 ./mitgcmuv_90x90x19023_intel.2015.0.090  
29    
30  cd ~/llc_4320/MITgcm/run_485568  #####################################
31  tail -f STDOUT.00000 | grep advcfl_W  # 30x30x96 configuration with asyncio
32    cd ~/geos5/asyncio/MITgcm
33    mkdir run2
34    cd build
35    rm *
36    ../tools/genmake2 -of \
37     ../../MITgcm_contrib/llc_hires/llc_90/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \
38     '../../MITgcm_contrib/llc_hires/llc_90/code ../../MITgcm_contrib/llc_hires/llc_90/code-async'
39    make depend
40    make -j 16
41    cp mitgcmuv ../run2
42    cd ../run2
43    ln -sf /nobackup/dmenemen/GEOS5/experiments/llc90/data/* .
44    ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
45    ln -sf /nobackupp2/dmenemen//llc_4320/run_template/runoff1p2472-360x180x12.bin .
46    cp ../../MITgcm_contrib/llc_hires/llc_90/input/* .
47    mpiexec -n 124 ./mitgcmuv
48    
49    ###################################################
50    # 30x30x96 configuration with asyncio and no seaice
51    cd ~/geos5/asyncio/MITgcm
52    mkdir run3
53    cd build
54    rm *
55    ../tools/genmake2 -of \
56     ../../MITgcm_contrib/llc_hires/llc_90/code-async/linux_amd64_ifort+mpi_ice_nas \
57      -mpi -mods ../../MITgcm_contrib/llc_hires/llc_90/code-async-noseaice
58    make depend
59    make -j 16
60    cp mitgcmuv ../run3
61    cd ../run3
62    ln -sf /nobackup/dmenemen/GEOS5/experiments/llc90/data/* .
63    ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
64    ln -sf /nobackupp2/dmenemen//llc_4320/run_template/runoff1p2472-360x180x12.bin .
65    cp ../../MITgcm_contrib/llc_hires/llc_90/input-noseaice/* .
66    mpiexec -n 124 ./mitgcmuv
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