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dimitri |
1.1 |
# This is a small test case with set-up as similar as possible |
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# to llc_4320 for testing asyncio and coupling to GEOS-5. |
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| 4 |
dimitri |
1.3 |
# request interactive nodes and load modules |
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dimitri |
1.2 |
qsub -I -q long -l select=6:ncpus=28:model=bro,walltime=120:00:00 |
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dimitri |
1.1 |
module purge |
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dimitri |
1.2 |
module load comp-intel/2016.2.181 mpi-sgi/mpt.2.14r19 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt |
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dimitri |
1.3 |
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dimitri |
1.7 |
# Get MITgcm from GitHub |
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#- method 1, using https: |
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git clone https://github.com/MITgcm/MITgcm.git |
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#- method 2, using ssh (requires a github account): |
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git clone git@github.com:MITgcm/MITgcm.git |
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# Get MITgcm_contrib from CVS |
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cvs co MITgcm_contrib/llc_hires/llc_90 |
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dimitri |
1.3 |
######################################## |
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# 30x30x96 configuration without asyncio |
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dimitri |
1.1 |
cd MITgcm |
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dimitri |
1.2 |
mkdir build run1 |
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dimitri |
1.1 |
cd build |
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rm * |
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dimitri |
1.3 |
../tools/genmake2 -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas \ |
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dimitri |
1.2 |
-mpi -mods ../../MITgcm_contrib/llc_hires/llc_90/code |
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dimitri |
1.1 |
make depend |
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dimitri |
1.4 |
make -j 16 |
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dimitri |
1.2 |
cp mitgcmuv ../run1 |
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cd ../run1 |
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ln -sf /nobackup/dmenemen/GEOS5/experiments/llc90/data/* . |
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ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* . |
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ln -sf /nobackupp2/dmenemen//llc_4320/run_template/runoff1p2472-360x180x12.bin . |
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cp ../../MITgcm_contrib/llc_hires/llc_90/input/* . |
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mpiexec -n 96 ./mitgcmuv |
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dimitri |
1.1 |
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dimitri |
1.3 |
##################################### |
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# 30x30x96 configuration with asyncio |
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dimitri |
1.6 |
cd ../../MITgcm |
| 39 |
dimitri |
1.2 |
mkdir run2 |
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cd build |
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rm * |
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../tools/genmake2 -of \ |
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../../MITgcm_contrib/llc_hires/llc_90/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \ |
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'../../MITgcm_contrib/llc_hires/llc_90/code ../../MITgcm_contrib/llc_hires/llc_90/code-async' |
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make depend |
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dimitri |
1.4 |
make -j 16 |
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dimitri |
1.2 |
cp mitgcmuv ../run2 |
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cd ../run2 |
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ln -sf /nobackup/dmenemen/GEOS5/experiments/llc90/data/* . |
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ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* . |
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ln -sf /nobackupp2/dmenemen//llc_4320/run_template/runoff1p2472-360x180x12.bin . |
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cp ../../MITgcm_contrib/llc_hires/llc_90/input/* . |
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dimitri |
1.6 |
mv data_async data |
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dimitri |
1.2 |
mpiexec -n 124 ./mitgcmuv |
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dimitri |
1.4 |
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dimitri |
1.7 |
############################################################ |
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# 30x30x96 configuration with asyncio using readtile_mpiio.c |
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cd ../../MITgcm |
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mkdir run3 |
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cd build |
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rm * |
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../tools/genmake2 -of \ |
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../../MITgcm_contrib/llc_hires/llc_90/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \ |
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'../../MITgcm_contrib/llc_hires/llc_90/code ../../MITgcm_contrib/llc_hires/llc_90/code-async' |
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make depend |
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make -j 16 |
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cp mitgcmuv ../run3 |
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cd ../run3 |
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ln -sf /nobackup/dmenemen/GEOS5/experiments/llc90/data/* . |
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ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* . |
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ln -sf /nobackupp2/dmenemen//llc_4320/run_template/runoff1p2472-360x180x12.bin . |
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cp ../../MITgcm_contrib/llc_hires/llc_90/input/* . |
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mv data_async data |
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mpiexec -n 124 ./mitgcmuv |
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dimitri |
1.4 |
################################################### |
| 77 |
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# 30x30x96 configuration with asyncio and no seaice |
| 78 |
dimitri |
1.7 |
mkdir run4 |
| 79 |
dimitri |
1.4 |
cd build |
| 80 |
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rm * |
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../tools/genmake2 -of \ |
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../../MITgcm_contrib/llc_hires/llc_90/code-async/linux_amd64_ifort+mpi_ice_nas \ |
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-mpi -mods ../../MITgcm_contrib/llc_hires/llc_90/code-async-noseaice |
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make depend |
| 85 |
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make -j 16 |
| 86 |
dimitri |
1.7 |
cp mitgcmuv ../run4 |
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cd ../run4 |
| 88 |
dimitri |
1.4 |
ln -sf /nobackup/dmenemen/GEOS5/experiments/llc90/data/* . |
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ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* . |
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ln -sf /nobackupp2/dmenemen//llc_4320/run_template/runoff1p2472-360x180x12.bin . |
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cp ../../MITgcm_contrib/llc_hires/llc_90/input-noseaice/* . |
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mpiexec -n 124 ./mitgcmuv |
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