1 |
dimitri |
1.14 |
############################# |
2 |
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# 90x90x19023 configuration |
3 |
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4 |
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qsub -I -q alphatst -l select=850:ncpus=24:model=has,walltime=8:00:00 -m abe -M menemenlis@me.com |
5 |
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6 |
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module purge |
7 |
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module load comp-intel/2015.0.090 test/mpt.2.11r8 netcdf/4.0 |
8 |
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9 |
dimitri |
1.15 |
cd ~/llc_4320 |
10 |
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cvs co MITgcm_code |
11 |
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cvs co MITgcm_contrib/llc_hires/llc_4320 |
12 |
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cd MITgcm |
13 |
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mkdir build run |
14 |
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lfs setstripe -c -1 run |
15 |
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cd build |
16 |
dimitri |
1.14 |
rm * |
17 |
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cp ../../MITgcm_contrib/llc_hires/llc_4320/code/SIZE.h_90x90x19023 SIZE.h |
18 |
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cp ../../MITgcm_contrib/llc_hires/llc_4320/code-async/readtile_mpiio.c . |
19 |
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emacs readtile_mpiio.c |
20 |
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tileSizeX = 90; |
21 |
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tileSizeY = 90; |
22 |
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../tools/genmake2 -of \ |
23 |
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../../MITgcm_contrib/llc_hires/llc_4320/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \ |
24 |
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'../../MITgcm_contrib/llc_hires/llc_4320/code ../../MITgcm_contrib/llc_hires/llc_4320/code-async' |
25 |
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make depend |
26 |
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make -j 16 |
27 |
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28 |
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cd ~/llc_4320/MITgcm/run |
29 |
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cp ../build/mitgcmuv mitgcmuv_90x90x19023_intel.2015.0.090 |
30 |
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cp data.exch2_90x90x19023 data.exch2 |
31 |
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32 |
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cd ~/llc_4320/MITgcm/run |
33 |
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mv STDOUT.00000 STDOUT.409536 |
34 |
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emacs data |
35 |
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nIter0=409536, |
36 |
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mv pickup_0000409536.data pickup.0000409536.data |
37 |
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mv pickup_0000409536.meta pickup.0000409536.meta |
38 |
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mv pickup_seaice_0000409536.data pickup_seaice.0000409536.data |
39 |
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mv pickup_seaice_0000409536.meta pickup_seaice.0000409536.meta |
40 |
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41 |
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cd ~/llc_4320/MITgcm/run |
42 |
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module purge |
43 |
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module load comp-intel/2015.0.090 test/mpt.2.11r8 netcdf/4.0 |
44 |
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cp data.exch2_90x90x19023 data.exch2 |
45 |
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mpiexec -n 20400 ./mitgcmuv_90x90x19023_intel.2015.0.090 |
46 |
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47 |
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tail -f STDOUT.00000 | grep advcfl_W |
48 |
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49 |
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50 |
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############################# |
51 |
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qsub -I -q alphatst -l select=850:ncpus=24:model=has,walltime=8:00:00 -m abe -M menemenlis@me.com |
52 |
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qsub -I -q alphatst -l select=497:ncpus=24:model=has,walltime=8:00:00 -m abe -M menemenlis@me.com |
53 |
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54 |
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qsub -I -q alphatst -l select=497:ncpus=24:model=has,walltime=8:00:00 -m abe -M menemenlis@me.com |
55 |
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module purge |
56 |
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module load comp-intel/2015.0.090 mpi-sgi/mpt.2.10r6 netcdf/4.0 |
57 |
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58 |
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module load comp-intel/2015.0.090 test/mpt.2.11r8 netcdf/4.0 |
59 |
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60 |
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cd ~/llc_4320/MITgcm/build |
61 |
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rm * |
62 |
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cp ../../MITgcm_contrib/llc_hires/llc_4320/code/SIZE.h_120x120x19023 SIZE.h |
63 |
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cp ../../MITgcm_contrib/llc_hires/llc_4320/code-async/readtile_mpiio.c . |
64 |
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emacs readtile_mpiio.c |
65 |
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tileSizeX = 120; |
66 |
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tileSizeY = 120; |
67 |
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cp ../../MITgcm_contrib/llc_hires/llc_4320/code-async/linux_amd64_ifort+mpi_ice_nas . |
68 |
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emacs linux_amd64_ifort+mpi_ice_nas |
69 |
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FOPTIM='-O3 -ipo -axCORE-AVX2,AVX -xSSE4.1 -ip -fp-model precise -traceback -ftz' |
70 |
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../tools/genmake2 -of linux_amd64_ifort+mpi_ice_nas -mpi -mods \ |
71 |
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'../../MITgcm_contrib/llc_hires/llc_4320/code ../../MITgcm_contrib/llc_hires/llc_4320/code-async' |
72 |
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make depend |
73 |
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make -j 16 |
74 |
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75 |
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cd ~/llc_4320/MITgcm/run |
76 |
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cp ../build/mitgcmuv mitgcmuv_120x120x10901_AVX2 |
77 |
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|
78 |
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mv STDOUT.00000 STDOUT.428544 |
79 |
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emacs data |
80 |
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nIter0=428544, |
81 |
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mv pickup_0000428544.data pickup.0000428544.data |
82 |
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mv pickup_0000428544.meta pickup.0000428544.meta |
83 |
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mv pickup_seaice_0000428544.data pickup_seaice.0000428544.data |
84 |
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mv pickup_seaice_0000428544.meta pickup_seaice.0000428544.meta |
85 |
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|
86 |
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cd ~/llc_4320/MITgcm/run |
87 |
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module purge |
88 |
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module load comp-intel/2015.0.090 test/mpt.2.11r8 netcdf/4.0 |
89 |
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cp data.exch2_120x120x10901 data.exch2 |
90 |
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mpiexec -n 12000 ./mitgcmuv_120x120x10901_Avx2 |
91 |
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92 |
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|
93 |
dimitri |
1.1 |
For interactive session, Ivy Bridge nodes: |
94 |
dimitri |
1.6 |
qsub -I -q devel -l select=300:ncpus=20:model=ivy,walltime=02:00:00 -m abe -M email |
95 |
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qsub -I -q normal -l select=300:ncpus=20:model=ivy,walltime=8:00:00 -m abe -M email |
96 |
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qsub -I -q long -l select=300:ncpus=20:model=ivy,walltime=120:00:00 -m abe -M email |
97 |
dimitri |
1.12 |
|
98 |
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############################# |
99 |
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# 90x90x19023 configuration |
100 |
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|
101 |
dimitri |
1.11 |
qsub -I -q long -l select=1020:ncpus=20:model=ivy,min_walltime=30:00,max_walltime=120:00:00 -m abe -M menemenlis@me.com |
102 |
dimitri |
1.12 |
module purge |
103 |
dimitri |
1.13 |
module load comp-intel/2012.0.032 mpi-sgi/mpt.2.10r6 netcdf/4.0 |
104 |
dimitri |
1.12 |
cd ~/llc_4320 |
105 |
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cvs co MITgcm_code |
106 |
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cvs co MITgcm_contrib/llc_hires/llc_4320 |
107 |
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cd MITgcm |
108 |
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mkdir build run |
109 |
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lfs setstripe -c -1 run |
110 |
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cd build |
111 |
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cp ../../MITgcm_contrib/llc_hires/llc_4320/code/SIZE.h_90x90x19023 SIZE.h |
112 |
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cp ../../MITgcm_contrib/llc_hires/llc_4320/code-async/readtile_mpiio.c . |
113 |
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emacs readtile_mpiio.c |
114 |
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tileSizeX = 90; |
115 |
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tileSizeY = 90; |
116 |
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../tools/genmake2 -of \ |
117 |
|
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../../MITgcm_contrib/llc_hires/llc_4320/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \ |
118 |
|
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'../../MITgcm_contrib/llc_hires/llc_4320/code ../../MITgcm_contrib/llc_hires/llc_4320/code-async' |
119 |
|
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make depend |
120 |
|
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make -j 16 |
121 |
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|
122 |
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cd ~/llc_4320/MITgcm/run |
123 |
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cp ../build/mitgcmuv mitgcmuv_90x90x19023 |
124 |
|
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ln -sf /nobackup/dmenemen/tarballs/llc_4320/run_template/* . |
125 |
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ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* . |
126 |
|
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cp ../../MITgcm_contrib/llc_hires/llc_4320/input/* . |
127 |
dimitri |
1.14 |
cp data.exch2_90x90x19023 data.exch2 |
128 |
dimitri |
1.12 |
emacs data |
129 |
|
|
|
130 |
|
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export MPI_BUFS_PER_PROC=1024 |
131 |
|
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export MPI_REQUEST_MAX=65536 |
132 |
|
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export MPI_GROUP_MAX=1024 |
133 |
|
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export MPI_NUM_MEMORY_REGIONS=8 |
134 |
|
|
export MPI_UNBUFFERED_STDIO=1 |
135 |
|
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export MPI_MEMMAP_OFF=1 |
136 |
|
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export MPI_UD_TIMEOUT=100 |
137 |
|
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mpiexec -n 20400 ./mitgcmuv_90x90x19023 |
138 |
|
|
|
139 |
|
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tail -f STDOUT.00000 | grep advcfl_W |
140 |
dimitri |
1.11 |
|
141 |
|
|
############################# |
142 |
dimitri |
1.13 |
# 48x48x64670 configuration |
143 |
|
|
|
144 |
|
|
module purge |
145 |
|
|
module load comp-intel/2012.0.032 mpi-sgi/mpt.2.10r6 netcdf/4.0 |
146 |
dimitri |
1.14 |
cd ~/llc_4320 |
147 |
dimitri |
1.13 |
cvs co MITgcm_code |
148 |
|
|
cvs co MITgcm_contrib/llc_hires/llc_4320 |
149 |
|
|
cd MITgcm |
150 |
|
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mkdir build run |
151 |
|
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lfs setstripe -c -1 run |
152 |
|
|
cd build |
153 |
|
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cp ../../MITgcm_contrib/llc_hires/llc_4320/code/SIZE.h_48x48x64670 SIZE.h |
154 |
|
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cp ../../MITgcm_contrib/llc_hires/llc_4320/code-async/readtile_mpiio.c . |
155 |
|
|
emacs readtile_mpiio.c |
156 |
|
|
tileSizeX = 48; |
157 |
|
|
tileSizeY = 48; |
158 |
|
|
../tools/genmake2 -of \ |
159 |
|
|
../../MITgcm_contrib/llc_hires/llc_4320/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \ |
160 |
|
|
'../../MITgcm_contrib/llc_hires/llc_4320/code ../../MITgcm_contrib/llc_hires/llc_4320/code-async' |
161 |
|
|
make depend |
162 |
|
|
make -j 16 |
163 |
|
|
|
164 |
|
|
cd ~/llc_4320/MITgcm/run |
165 |
|
|
cp ../build/mitgcmuv mitgcmuv_48x48x64670 |
166 |
|
|
cp ../../MITgcm_contrib/llc_hires/llc_4320/input/data.exch2_90x90x19023 data.exch2 |
167 |
|
|
|
168 |
|
|
############################# |
169 |
dimitri |
1.11 |
# generate 60x60 blank tiles |
170 |
|
|
qsub -I -q long -l select=600:ncpus=20:model=ivy,min_walltime=30:00,max_walltime=120:00:00 -m abe -M menemenlis@me.com |
171 |
|
|
module purge |
172 |
|
|
module load comp-intel/2012.0.032 netcdf/4.0 |
173 |
|
|
module use -a ~kjtaylor/modulefiles |
174 |
|
|
module load sles11sp3/mpt-2.10-nasa201311271217 |
175 |
|
|
cd ~/llc_4320/MITgcm |
176 |
|
|
mkdir run_60x60 |
177 |
|
|
lfs setstripe -c -1 run_60x60 |
178 |
|
|
cd build |
179 |
|
|
rm * |
180 |
|
|
cp ../../MITgcm_contrib/llc_hires/llc_4320/code-async/readtile_mpiio.c . |
181 |
|
|
emacs readtile_mpiio.c |
182 |
|
|
tileSizeX = 60; |
183 |
|
|
tileSizeY = 60; |
184 |
|
|
cp ../../MITgcm_contrib/llc_hires/llc_4320/code/SIZE.h_120x120x10901 SIZE.h |
185 |
|
|
emacs SIZE.h |
186 |
|
|
& sNx = 60, |
187 |
|
|
& sNy = 60, |
188 |
|
|
& nSx = 6, |
189 |
|
|
& nPx = 11232, |
190 |
|
|
& Nr = 2 ) |
191 |
|
|
cp ../../MITgcm_contrib/llc_hires/llc_4320/code-async/eeboot_minimal.F . |
192 |
|
|
emacs eeboot_minimal.F |
193 |
|
|
C standardMessageUnit=errorMessageUnit |
194 |
|
|
WRITE(fNam,'(A,A)') 'STDOUT.', myProcessStr(1:5) |
195 |
|
|
OPEN(standardMessageUnit,FILE=fNam,STATUS='unknown') |
196 |
|
|
../tools/genmake2 -of \ |
197 |
|
|
../../MITgcm_contrib/llc_hires/llc_4320/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \ |
198 |
|
|
'../../MITgcm_contrib/llc_hires/llc_4320/code ../../MITgcm_contrib/llc_hires/llc_4320/code-async' |
199 |
|
|
make depend |
200 |
|
|
make -j 16 |
201 |
|
|
cd ~/llc_4320/MITgcm/run_60x60 |
202 |
|
|
cp ../build/mitgcmuv . |
203 |
|
|
ln -sf /nobackup/dmenemen/tarballs/llc_4320/run_template/* . |
204 |
|
|
ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* . |
205 |
|
|
cp ../../MITgcm_contrib/llc_hires/llc_4320/input/* . |
206 |
|
|
mv data.exch2_120x120x10901 data.exch2 |
207 |
|
|
emacs data |
208 |
|
|
tRef = 18.89, 18.89, |
209 |
|
|
sRef = 34.84, 34.84, |
210 |
|
|
endtime=20., |
211 |
|
|
delR = 1.00, 1.14, |
212 |
|
|
# hydrogThetaFile='THETA_llc2160_10sep2011_4320x56160x90_r4', |
213 |
|
|
# hydrogSaltFile ='SALT_llc2160_10sep2011_4320x56160x90_r4', |
214 |
|
|
# uVelInitFile ='UVEL_llc2160_10sep2011_4320x56160x90_r4', |
215 |
|
|
# vVelInitFile ='VVEL_llc2160_10sep2011_4320x56160x90_r4', |
216 |
|
|
# pSurfInitFile ='ETAN_llc2160_10sep2011_4320x56160_r4', |
217 |
|
|
emacs data.exch2 |
218 |
|
|
# remove the blank tile list |
219 |
|
|
export MPI_BUFS_PER_PROC=1024 |
220 |
|
|
export MPI_REQUEST_MAX=65536 |
221 |
|
|
export MPI_GROUP_MAX=1024 |
222 |
|
|
export MPI_NUM_MEMORY_REGIONS=8 |
223 |
|
|
export MPI_UNBUFFERED_STDIO=1 |
224 |
|
|
export MPI_MEMMAP_OFF=1 |
225 |
dimitri |
1.12 |
export MPI_UD_TIMEOUT=100 |
226 |
dimitri |
1.11 |
mpiexec -n 12000 ./mitgcmuv |
227 |
|
|
|
228 |
|
|
############################# |
229 |
|
|
# generate 45x45 blank tiles |
230 |
|
|
qsub -I -q long -l select=600:ncpus=20:model=ivy,min_walltime=30:00,max_walltime=120:00:00 -m abe -M menemenlis@me.com |
231 |
|
|
module purge |
232 |
|
|
module load comp-intel/2012.0.032 netcdf/4.0 |
233 |
|
|
module use -a ~kjtaylor/modulefiles |
234 |
|
|
module load sles11sp3/mpt-2.10-nasa201311271217 |
235 |
|
|
cd ~/llc_4320/MITgcm |
236 |
|
|
mkdir run_45x45 |
237 |
|
|
lfs setstripe -c -1 run_45x45 |
238 |
|
|
cd build |
239 |
|
|
rm * |
240 |
|
|
cp ../../MITgcm_contrib/llc_hires/llc_4320/code-async/readtile_mpiio.c . |
241 |
|
|
emacs readtile_mpiio.c |
242 |
|
|
tileSizeX = 45; |
243 |
|
|
tileSizeY = 45; |
244 |
|
|
cp ../../MITgcm_contrib/llc_hires/llc_4320/code/SIZE.h_120x120x10901 SIZE.h |
245 |
|
|
emacs SIZE.h |
246 |
|
|
& sNx = 45, |
247 |
|
|
& sNy = 45, |
248 |
|
|
& nSx = 12, |
249 |
|
|
& nPx = 9984, |
250 |
|
|
& Nr = 2 ) |
251 |
|
|
cp ../../MITgcm_contrib/llc_hires/llc_4320/code-async/eeboot_minimal.F . |
252 |
|
|
emacs eeboot_minimal.F |
253 |
|
|
C standardMessageUnit=errorMessageUnit |
254 |
|
|
WRITE(fNam,'(A,A)') 'STDOUT.', myProcessStr(1:5) |
255 |
|
|
OPEN(standardMessageUnit,FILE=fNam,STATUS='unknown') |
256 |
|
|
../tools/genmake2 -of \ |
257 |
|
|
../../MITgcm_contrib/llc_hires/llc_4320/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \ |
258 |
|
|
'../../MITgcm_contrib/llc_hires/llc_4320/code ../../MITgcm_contrib/llc_hires/llc_4320/code-async' |
259 |
|
|
make depend |
260 |
|
|
make -j 16 |
261 |
|
|
cd ~/llc_4320/MITgcm/run_45x45 |
262 |
|
|
cp ../build/mitgcmuv . |
263 |
|
|
ln -sf /nobackup/dmenemen/tarballs/llc_4320/run_template/* . |
264 |
|
|
ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* . |
265 |
|
|
cp ../../MITgcm_contrib/llc_hires/llc_4320/input/* . |
266 |
|
|
mv data.exch2_120x120x10901 data.exch2 |
267 |
|
|
emacs data |
268 |
|
|
tRef = 18.89, 18.89, |
269 |
|
|
sRef = 34.84, 34.84, |
270 |
|
|
endtime=20., |
271 |
|
|
delR = 1.00, 1.14, |
272 |
|
|
# hydrogThetaFile='THETA_llc2160_10sep2011_4320x56160x90_r4', |
273 |
|
|
# hydrogSaltFile ='SALT_llc2160_10sep2011_4320x56160x90_r4', |
274 |
|
|
# uVelInitFile ='UVEL_llc2160_10sep2011_4320x56160x90_r4', |
275 |
|
|
# vVelInitFile ='VVEL_llc2160_10sep2011_4320x56160x90_r4', |
276 |
|
|
# pSurfInitFile ='ETAN_llc2160_10sep2011_4320x56160_r4', |
277 |
|
|
emacs data.exch2 |
278 |
|
|
# remove the blank tile list |
279 |
dimitri |
1.12 |
export MPI_BUFS_PER_PROC=1024 |
280 |
|
|
export MPI_REQUEST_MAX=65536 |
281 |
|
|
export MPI_GROUP_MAX=1024 |
282 |
|
|
export MPI_NUM_MEMORY_REGIONS=8 |
283 |
|
|
export MPI_UNBUFFERED_STDIO=1 |
284 |
|
|
export MPI_MEMMAP_OFF=1 |
285 |
|
|
export MPI_UD_TIMEOUT=100 |
286 |
|
|
mpiexec -n 12000 ./mitgcmuv |
287 |
dimitri |
1.11 |
|
288 |
dimitri |
1.12 |
############################# |
289 |
|
|
# generate 48x48 blank tiles |
290 |
|
|
qsub -I -q devel -l select=600:ncpus=20:model=ivy,walltime=2:00:00 -m abe -M menemenlis@me.com |
291 |
|
|
module purge |
292 |
dimitri |
1.13 |
module load comp-intel/2012.0.032 mpi-sgi/mpt.2.10r6 netcdf/4.0 |
293 |
dimitri |
1.12 |
cd ~/llc_4320/MITgcm |
294 |
|
|
mkdir run_48x48 |
295 |
|
|
lfs setstripe -c -1 run_48x48 |
296 |
|
|
cd build |
297 |
|
|
rm * |
298 |
|
|
cp ../../MITgcm_contrib/llc_hires/llc_4320/code-async/readtile_mpiio.c . |
299 |
|
|
emacs readtile_mpiio.c |
300 |
|
|
tileSizeX = 48; |
301 |
|
|
tileSizeY = 48; |
302 |
|
|
cp ../../MITgcm_contrib/llc_hires/llc_4320/code/SIZE.h_120x120x10901 SIZE.h |
303 |
|
|
emacs SIZE.h |
304 |
|
|
& sNx = 48, |
305 |
|
|
& sNy = 48, |
306 |
|
|
& nSx = 10, |
307 |
|
|
& nPx = 10530, |
308 |
|
|
& Nr = 2 ) |
309 |
|
|
cp ../../MITgcm_contrib/llc_hires/llc_4320/code-async/eeboot_minimal.F . |
310 |
|
|
emacs eeboot_minimal.F |
311 |
|
|
C standardMessageUnit=errorMessageUnit |
312 |
|
|
WRITE(fNam,'(A,A)') 'STDOUT.', myProcessStr(1:5) |
313 |
|
|
OPEN(standardMessageUnit,FILE=fNam,STATUS='unknown') |
314 |
|
|
../tools/genmake2 -of \ |
315 |
|
|
../../MITgcm_contrib/llc_hires/llc_4320/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \ |
316 |
|
|
'../../MITgcm_contrib/llc_hires/llc_4320/code ../../MITgcm_contrib/llc_hires/llc_4320/code-async' |
317 |
|
|
make depend |
318 |
|
|
make -j 16 |
319 |
|
|
cd ~/llc_4320/MITgcm/run_48x48 |
320 |
|
|
cp ../build/mitgcmuv . |
321 |
|
|
ln -sf /nobackup/dmenemen/tarballs/llc_4320/run_template/* . |
322 |
|
|
ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* . |
323 |
|
|
cp ../../MITgcm_contrib/llc_hires/llc_4320/input/* . |
324 |
|
|
mv data.exch2_120x120x10901 data.exch2 |
325 |
|
|
emacs data.exch2 |
326 |
|
|
# remove blankList |
327 |
|
|
emacs data |
328 |
|
|
tRef = 18.89, 18.89, |
329 |
|
|
sRef = 34.84, 34.84, |
330 |
|
|
endtime=20., |
331 |
|
|
delR = 1.00, 1.14, |
332 |
|
|
# hydrogThetaFile='THETA_llc2160_10sep2011_4320x56160x90_r4', |
333 |
|
|
# hydrogSaltFile ='SALT_llc2160_10sep2011_4320x56160x90_r4', |
334 |
|
|
# uVelInitFile ='UVEL_llc2160_10sep2011_4320x56160x90_r4', |
335 |
|
|
# vVelInitFile ='VVEL_llc2160_10sep2011_4320x56160x90_r4', |
336 |
|
|
# pSurfInitFile ='ETAN_llc2160_10sep2011_4320x56160_r4', |
337 |
dimitri |
1.11 |
export MPI_BUFS_PER_PROC=1024 |
338 |
|
|
export MPI_REQUEST_MAX=65536 |
339 |
|
|
export MPI_GROUP_MAX=1024 |
340 |
|
|
export MPI_NUM_MEMORY_REGIONS=8 |
341 |
|
|
export MPI_UNBUFFERED_STDIO=1 |
342 |
|
|
export MPI_MEMMAP_OFF=1 |
343 |
dimitri |
1.12 |
export MPI_UD_TIMEOUT=100 |
344 |
dimitri |
1.11 |
mpiexec -n 12000 ./mitgcmuv |
345 |
|
|
|
346 |
|
|
############################# |
347 |
|
|
# 120x120x10901 configuration |
348 |
|
|
|
349 |
|
|
qsub -I -q long -l select=600:ncpus=20:model=ivy,min_walltime=30:00,max_walltime=120:00:00 -m abe -M menemenlis@me.com |
350 |
|
|
module purge |
351 |
|
|
module load comp-intel/2012.0.032 netcdf/4.0 |
352 |
|
|
module use -a ~kjtaylor/modulefiles |
353 |
|
|
module load sles11sp3/mpt-2.10-nasa201311271217 |
354 |
|
|
cd ~/llc_4320 |
355 |
|
|
cvs co MITgcm_code |
356 |
|
|
cvs co MITgcm_contrib/llc_hires/llc_4320 |
357 |
|
|
cd MITgcm |
358 |
|
|
mkdir build run |
359 |
|
|
lfs setstripe -c -1 run |
360 |
|
|
cd build |
361 |
|
|
cp ../../MITgcm_contrib/llc_hires/llc_4320/code/SIZE.h_120x120x10901 SIZE.h |
362 |
|
|
cp ../../MITgcm_contrib/llc_hires/llc_4320/code-async/readtile_mpiio.c . |
363 |
|
|
emacs readtile_mpiio.c |
364 |
|
|
tileSizeX = 120; |
365 |
|
|
tileSizeY = 120; |
366 |
|
|
../tools/genmake2 -of \ |
367 |
|
|
../../MITgcm_contrib/llc_hires/llc_4320/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \ |
368 |
|
|
'../../MITgcm_contrib/llc_hires/llc_4320/code ../../MITgcm_contrib/llc_hires/llc_4320/code-async' |
369 |
|
|
make depend |
370 |
|
|
make -j 16 |
371 |
|
|
|
372 |
|
|
cd ~/llc_4320/MITgcm/run |
373 |
|
|
cp ../build/mitgcmuv mitgcmuv_120x120x10901 |
374 |
|
|
ln -sf /nobackup/dmenemen/tarballs/llc_4320/run_template/* . |
375 |
|
|
ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* . |
376 |
|
|
cp ../../MITgcm_contrib/llc_hires/llc_4320/input/* . |
377 |
|
|
mv data.exch2_120x120x10901 data.exch2 |
378 |
|
|
emacs data |
379 |
|
|
|
380 |
|
|
export MPI_BUFS_PER_PROC=1024 |
381 |
|
|
export MPI_REQUEST_MAX=65536 |
382 |
|
|
export MPI_GROUP_MAX=1024 |
383 |
|
|
export MPI_NUM_MEMORY_REGIONS=8 |
384 |
|
|
export MPI_UNBUFFERED_STDIO=1 |
385 |
|
|
export MPI_MEMMAP_OFF=1 |
386 |
dimitri |
1.12 |
export MPI_UD_TIMEOUT=100 |
387 |
dimitri |
1.11 |
mpiexec -n 12000 ./mitgcmuv_120x120x10901 |
388 |
|
|
|
389 |
|
|
tail -f STDOUT.00000 | grep advcfl_W |
390 |
dimitri |
1.5 |
|
391 |
|
|
============== |
392 |
|
|
|
393 |
dimitri |
1.10 |
qsub -I -q R3089666 -l select=1750:model=ivy:aoe=sles11,walltime=04:00:00 |
394 |
|
|
tcsh |
395 |
|
|
cd ~/llc_4320/MITgcm |
396 |
|
|
mkdir run |
397 |
|
|
lfs setstripe -c -1 run |
398 |
|
|
cd run |
399 |
|
|
cat $PBS_NODEFILE | awk '{for (i=0;i<20;++i) print $0}' > mynodes |
400 |
|
|
setenv PBS_NODEFILE mynodes |
401 |
|
|
cp /nobackupp8/chenze/run/mitgcmuv_72x72x29297 . |
402 |
|
|
ln -sf /nobackupp8/chenze/run/pickup_seaice_0000000360.meta pickup_seaice.0000000180.meta |
403 |
|
|
ln -sf /nobackupp8/chenze/run/pickup_seaice_0000000360.data pickup_seaice.0000000180.data |
404 |
|
|
ln -sf /nobackupp8/chenze/run/pickup_0000000360.meta pickup.0000000180.meta |
405 |
|
|
ln -sf /nobackupp8/chenze/run/pickup_0000000360.data pickup.0000000180.data |
406 |
|
|
ln -sf /nobackup/dmenemen/tarballs/llc_4320/run_template/* . |
407 |
|
|
ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* . |
408 |
|
|
cp ../../MITgcm_contrib/llc_hires/llc_4320/input/* . |
409 |
|
|
mv data.exch2_72x72x29297 data.exch2 |
410 |
|
|
module purge |
411 |
|
|
module load comp-intel/2012.0.032 netcdf/4.0 |
412 |
|
|
module use -a ~kjtaylor/modulefiles |
413 |
|
|
module load sles11sp3/mpt-2.10-nasa201311271217 |
414 |
|
|
setenv MPI_BUFS_PER_PROC 512 |
415 |
|
|
setenv MPI_REQUEST_MAX 65536 |
416 |
|
|
setenv MPI_GROUP_MAX 1024 |
417 |
|
|
setenv MPI_NUM_MEMORY_REGIONS 8 |
418 |
|
|
setenv MPI_UNBUFFERED_STDIO 1 |
419 |
|
|
setenv MPI_MEMMAP_OFF 1 |
420 |
dimitri |
1.12 |
export MPI_UD_TIMEOUT=100 |
421 |
dimitri |
1.10 |
|
422 |
|
|
mpiexec -n 35000 ./mitgcmuv_72x72x29297 |
423 |
|
|
|
424 |
|
|
tail -f STDOUT.00000 | grep advcfl_w |
425 |
|
|
|
426 |
|
|
============== |
427 |
|
|
|
428 |
dimitri |
1.5 |
cd ~/llc_4320 |
429 |
|
|
cvs co MITgcm_code |
430 |
|
|
cvs co MITgcm_contrib/llc_hires/llc_4320 |
431 |
dimitri |
1.9 |
# set correct tileSizeX and tileSizeY in MITgcm_contrib/llc_hires/llc_4320/cpde-asyn/readtile_mpiio.c |
432 |
dimitri |
1.5 |
cd MITgcm |
433 |
|
|
module purge |
434 |
|
|
module load comp-intel/2012.0.032 mpi-sgi/mpt.2.08r7 netcdf/4.0 |
435 |
|
|
mkdir build run |
436 |
|
|
lfs setstripe -c -1 run |
437 |
|
|
cd build |
438 |
dimitri |
1.3 |
cp ../../MITgcm_contrib/llc_hires/llc_4320/code/SIZE.h_72x72x29297 SIZE.h |
439 |
|
|
../tools/genmake2 -of \ |
440 |
|
|
../../MITgcm_contrib/llc_hires/llc_4320/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \ |
441 |
|
|
'../../MITgcm_contrib/llc_hires/llc_4320/code ../../MITgcm_contrib/llc_hires/llc_4320/code-async' |
442 |
|
|
make depend |
443 |
dimitri |
1.8 |
make -j 16 |
444 |
dimitri |
1.3 |
cd ../run |
445 |
dimitri |
1.9 |
cp ../build/mitgcmuv mitgcmuv_72x72x29297 |
446 |
dimitri |
1.3 |
ln -sf /nobackup/dmenemen/tarballs/llc_4320/run_template/* . |
447 |
|
|
ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* . |
448 |
|
|
cp ../../MITgcm_contrib/llc_hires/llc_4320/input/* . |
449 |
|
|
mv data.exch2_72x72x29297 data.exch2 |
450 |
dimitri |
1.7 |
export MPI_NUM_MEMORY_REGIONS=256 |
451 |
dimitri |
1.9 |
mpiexec -n 35000 ./mitgcmuv_72x72x29297 |
452 |
|
|
|
453 |
dimitri |
1.10 |
tail -f STDOUT.00000 | grep advcfl_w |
454 |
|
|
|
455 |
dimitri |
1.9 |
============== |
456 |
|
|
|
457 |
|
|
cd ~/llc_4320 |
458 |
|
|
cvs co MITgcm_code |
459 |
|
|
cvs co MITgcm_contrib/llc_hires/llc_4320 |
460 |
|
|
# set correct tileSizeX and tileSizeY in MITgcm_contrib/llc_hires/llc_4320/cpde-asyn/readtile_mpiio.c |
461 |
|
|
cd MITgcm |
462 |
|
|
module purge |
463 |
|
|
module load comp-intel/2012.0.032 mpi-sgi/mpt.2.08r7 netcdf/4.0 |
464 |
|
|
mkdir build run_180x180x5015 |
465 |
|
|
lfs setstripe -c -1 run_180x180x5015 |
466 |
|
|
cd build |
467 |
|
|
cp ../../MITgcm_contrib/llc_hires/llc_4320/code/SIZE.h_180x180x5015 SIZE.h |
468 |
|
|
../tools/genmake2 -of \ |
469 |
|
|
../../MITgcm_contrib/llc_hires/llc_4320/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \ |
470 |
|
|
'../../MITgcm_contrib/llc_hires/llc_4320/code ../../MITgcm_contrib/llc_hires/llc_4320/code-async' |
471 |
|
|
make depend |
472 |
|
|
make -j 16 |
473 |
|
|
cd ../run_180x180x5015 |
474 |
|
|
cp ../build/mitgcmuv mitgcmuv_180x180x5015 |
475 |
|
|
ln -sf /nobackup/dmenemen/tarballs/llc_4320/run_template/* . |
476 |
|
|
ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* . |
477 |
|
|
cp ../../MITgcm_contrib/llc_hires/llc_4320/input/* . |
478 |
|
|
mv data.exch2_72x72x29297 data.exch2 |
479 |
|
|
export MPI_NUM_MEMORY_REGIONS=256 |
480 |
|
|
mpiexec -n 6000 ./mitgcmuv_180x180x5015 |
481 |
dimitri |
1.3 |
|
482 |
|
|
============== |
483 |
|
|
|
484 |
dimitri |
1.1 |
look at output |
485 |
|
|
|
486 |
|
|
for ts=[0 120 600:10:980 1080:120:2280] |
487 |
|
|
fld=quikread_llc(['Eta.' myint2str(ts,10) '.data'],4320); |
488 |
|
|
clf,quikplot_llc(fld),caxis([-2.5 2]),thincolorbar |
489 |
|
|
title(ts) |
490 |
|
|
pause(.1) |
491 |
|
|
end |
492 |
|
|
|
493 |
|
|
============== |
494 |
|
|
|
495 |
|
|
to determine empty tiles: |
496 |
|
|
grep Empty STDOUT.* |
497 |
|
|
|
498 |
|
|
============= |
499 |
|
|
|
500 |
|
|
memory requirements: |
501 |
|
|
nPx sNx sNy nSx cpu node0 total |
502 |
|
|
3744 180 180 2 san 22,106,128kb 5,195,641,224kb - node ran out of memory and crashed |
503 |
|
|
5616 120 120 3 san - node ran out of memory and crashed |
504 |
|
|
7488 180 180 1 san |
505 |
|
|
|
506 |
|
|
============= |
507 |
|
|
|
508 |
|
|
2 = 2 |
509 |
|
|
3 = 3 |
510 |
|
|
2*2 = 4 |
511 |
|
|
5 = 5 |
512 |
|
|
2*3 = 6 |
513 |
|
|
2*2*2 = 8 |
514 |
|
|
3*3 = 9 |
515 |
|
|
2*5 = 10 |
516 |
|
|
2*2*3 = 12 |
517 |
|
|
3*5 = 15 |
518 |
|
|
2*2*2*2 = 16 |
519 |
|
|
2*3*3 = 18 |
520 |
|
|
2*2*5 = 20 |
521 |
|
|
2*2*2*3 = 24 |
522 |
|
|
3*3*3 = 27 |
523 |
|
|
2*3*5 = 30 |
524 |
|
|
2*2*2*2*2 = 32 |
525 |
|
|
2*2*3*3 = 36 |
526 |
|
|
2*2*2*5 = 40 |
527 |
|
|
3*3*5 = 45 |
528 |
|
|
2*2*2*2*3 = 48 |
529 |
|
|
2*3*3*3 = 54 |
530 |
|
|
2*2*3*5 = 60 |
531 |
|
|
2*2*2*3*3 = 72 * 60 |
532 |
|
|
2*2*2*2*5 = 80 * 54 |
533 |
|
|
2*3*3*5 = 90 * 48 |
534 |
|
|
2*2*2*2*2*3 = 96 * 45 |
535 |
|
|
2*2*3*3*3 = 108 * 40 |
536 |
|
|
2*2*2*3*5 = 120 * 36 |
537 |
|
|
3*3*3*5 = 135 * 32 |
538 |
|
|
2*2*2*2*3*3 = 144 * 30 |
539 |
|
|
2*2*2*2*2*5 = 160 * 27 |
540 |
|
|
2*2*3*3*5 = 180 * 24 |
541 |
|
|
2*2*2*3*3*3 = 216 * 20 |
542 |
|
|
2*2*2*2*3*5 = 240 * 18 |
543 |
|
|
2*3*3*3*5 = 270 * 16 |
544 |
|
|
2*2*2*2*2*3*3 = 288 * 15 |
545 |
|
|
2*2*2*3*3*5 = 360 * 12 |
546 |
|
|
2*2*2*2*3*3*3 = 432 * 10 |
547 |
|
|
2*2*2*2*2*3*5 = 480 * 9 |
548 |
|
|
2*2*3*3*3*5 = 540 * 8 |
549 |
|
|
2*2*2*2*3*3*5 = 720 * 6 |
550 |
|
|
2*2*2*2*2*3*3*3 = 864 * 5 |
551 |
|
|
2*2*2*3*3*3*5 = 1080 * 4 |
552 |
|
|
2*2*2*2*2*3*3*5 = 1440 * 3 |
553 |
|
|
2*2*2*2*3*3*3*5 = 2160 * 2 |