/[MITgcm]/MITgcm_contrib/llc_hires/llc_2160/readme.txt
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revision 1.7 by dimitri, Mon Jan 27 03:25:39 2014 UTC revision 1.12 by dimitri, Wed Nov 16 15:28:28 2016 UTC
# Line 1  Line 1 
1  For interactive session, Ivy Bridge nodes:  For interactive session, Ivy Bridge nodes:
2  qsub -I -q devel -l select=300:ncpus=20:model=ivy,walltime=02:00:00 -m abe -M email  qsub -I -q devel -l select=300:ncpus=20:model=ivy,walltime=02:00:00 -m abe -M YOUR_EMAIL_HERE
3  qsub -I -q normal -l select=103:ncpus=20:model=ivy,walltime=8:00:00 -m abe -M email  qsub -I -q normal -l select=103:ncpus=20:model=ivy,walltime=8:00:00 -m abe -M YOUR_EMAIL_HERE
4  qsub -I -q long -l select=300:ncpus=20:model=ivy,walltime=120:00:00 -m abe -M email  qsub -I -q long -l select=300:ncpus=20:model=ivy,walltime=120:00:00 -m abe -M YOUR_EMAIL_HERE
5  qsub -I -q long -l select=103:ncpus=20:model=ivy,min_walltime=30:00,max_walltime=120:00:00 -m abe -M email  qsub -I -q long -l select=103:ncpus=20:model=ivy,min_walltime=30:00,max_walltime=120:00:00 -m abe -M YOUR_EMAIL_HERE
6    
7  #############################  #############################
8  # 60x60x10882 configuration  # 60x60x10882 configuration
9    
10  qsub -I -q long -l select=600:ncpus=20:model=ivy,min_walltime=30:00,max_walltime=120:00:00 -m abe -M menemenlis@me.com  qsub -I -q long -l select=600:ncpus=20:model=ivy,min_walltime=30:00,max_walltime=120:00:00 -m abe -M YOUR_EMAIL_HERE
11  module purge  module purge
12  module load  comp-intel/2012.0.032 netcdf/4.0  module load comp-intel/2012.0.032 mpi-sgi/mpt.2.10r6 netcdf/4.0
 module use -a ~kjtaylor/modulefiles  
 module load sles11sp3/mpt-2.10-nasa201311271217  
13  cd ~/llc_2160  cd ~/llc_2160
14  cvs co MITgcm_code  cvs co -r checkpoint64t MITgcm_code
15  cvs co MITgcm_contrib/llc_hires/llc_4320  cvs co MITgcm_contrib/llc_hires/llc_2160
16  cd MITgcm  cd MITgcm
17  mkdir build run  mkdir build run
 lfs setstripe -c -1 run  
18  cd build  cd build
19  cp ../../MITgcm_contrib/llc_hires/llc_2160/code/SIZE.h_60x60_10882 SIZE.h  cp ../../MITgcm_contrib/llc_hires/llc_2160/code/SIZE.h_60x60_10882 SIZE.h
20  cp ../../MITgcm_contrib/llc_hires/llc_2160/code-async/readtile_mpiio.c .  cp ../../MITgcm_contrib/llc_hires/llc_2160/code-async/readtile_mpiio.c .
# Line 35  cp ../build/mitgcmuv mitgcmuv_60x60x1088 Line 32  cp ../build/mitgcmuv mitgcmuv_60x60x1088
32  ln -sf /nobackup/dmenemen/tarballs/llc_2160/run_template/* .  ln -sf /nobackup/dmenemen/tarballs/llc_2160/run_template/* .
33  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
34  cp ../../MITgcm_contrib/llc_hires/llc_2160/input/* .  cp ../../MITgcm_contrib/llc_hires/llc_2160/input/* .
35  mv ../../MITgcm_contrib/llc_hires/llc_2160/input/data.exch2_60x60x10882 data.exch2  cp ../../MITgcm_contrib/llc_hires/llc_2160/input/data.exch2_60x60x10882 data.exch2
36  emacs data  emacs data
37    
38  export MPI_BUFS_PER_PROC=1024  export MPI_BUFS_PER_PROC=1024
# Line 44  export MPI_GROUP_MAX=1024 Line 41  export MPI_GROUP_MAX=1024
41  export MPI_NUM_MEMORY_REGIONS=8  export MPI_NUM_MEMORY_REGIONS=8
42  export MPI_UNBUFFERED_STDIO=1  export MPI_UNBUFFERED_STDIO=1
43  export MPI_MEMMAP_OFF=1  export MPI_MEMMAP_OFF=1
44    export MPI_UD_TIMEOUT=100
45  mpiexec -n 12000 ./mitgcmuv_60x60x10882  mpiexec -n 12000 ./mitgcmuv_60x60x10882
46    
47  tail -f STDOUT.00000 | grep advcfl_W  tail -f STDOUT.00000 | grep advcfl_W
48    
49    ################################################
50    # 144x144x2047 configuration for grid generation
51    
52    qsub -I -q devel -l select=103:ncpus=20:model=ivy,walltime=02:00:00 -m abe -M YOUR_EMAIL_HERE
53    module purge
54    module load comp-intel/2012.0.032 mpi-sgi/mpt.2.10r6 netcdf/4.0
55    cd ~/llc_2160
56    cvs co MITgcm_code
57    cvs co MITgcm_contrib/llc_hires/llc_2160
58    cd MITgcm
59    mkdir build run_grid
60    lfs setstripe -c -1 run_grid
61    cd build
62    cp ../../MITgcm_contrib/llc_hires/llc_2160/code/SIZE.h_144x144x2047 SIZE.h
63    ../tools/genmake2 -of \
64     ../../MITgcm_contrib/llc_hires/llc_2160/code-async/linux_amd64_ifort+mpi_ice_nas \
65     -mpi  -mods ../../MITgcm_contrib/llc_hires/llc_2160/code
66    make depend
67    make -j 16
68    
69    cd ~/llc_2160/MITgcm/run_grid
70    cp ../build/mitgcmuv mitgcmuv_144x144x2047
71    ln -sf /nobackup/dmenemen/tarballs/llc_2160/run_template/* .
72    ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
73    cp ../../MITgcm_contrib/llc_hires/llc_2160/input/* .
74    cp ../../MITgcm_contrib/llc_hires/llc_2160/input/data.exch2_144x144x2047 data.exch2
75    
76    emacs data
77     debuglevel=3,
78     useSingleCPUio=.TRUE.,
79     endtime=0.,
80     deltaT = 1.,
81    
82    mpiexec -n 2047 ./mitgcmuv_144x144x2047
83    
84  ==============  ==============
85    
86  cd ~/llc_2160  cd ~/llc_2160
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