/[MITgcm]/MITgcm_contrib/llc_hires/llc_1080/readme.txt
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revision 1.4 by dimitri, Tue Oct 22 21:59:36 2013 UTC revision 1.9 by dimitri, Wed Nov 6 18:12:56 2013 UTC
# Line 1  Line 1 
1  For interactive session, Ivy Bridge nodes:  For interactive session, Ivy Bridge nodes:
2  qsub -I -q devel -l select=24:ncpus=20:model=ivy,walltime=02:00:00 -m abe -M menemenlis@jpl.nasa.gov  qsub -I -q devel -l select=170:ncpus=20:model=ivy,walltime=02:00:00 -m abe -M email
3  qsub -I -q long -l select=80:ncpus=20:model=ivy,walltime=120:00:00 -m abe -M menemenlis@jpl.nasa.gov  qsub -I -q long  -l select=170:ncpus=20:model=ivy,walltime=120:00:00 -m abe -M email
4  qsub -I -q long -l select=:ncpus=20:model=ivy,min_walltime=30:00,max_walltime=120:00:00  qsub -I -q long  -l select=170:ncpus=20:model=ivy,min_walltime=30:00,max_walltime=120:00:00 -m abe -M email
5    
6  For batch submission:  ==============
7  qsub -q devel -l select=24:ncpus=20:model=ivy,walltime=02:00:00 runscript  # 60x60x2872 tile configuration
 qsub qsub_llc1080_468.csh  
8    
9  These will give you 24 x 20 = 480 cores.  cd ~/llc_1080
10    cvs co MITgcm_code
11    cvs co MITgcm_contrib/llc_hires/llc_1080
12    cd MITgcm
13    module purge
14    module load comp-intel/2012.0.032 mpi-sgi/mpt.2.08r7 netcdf/4.0
15    mkdir build run
16    lfs setstripe -c -1 run
17    cd build
18    cp ../../MITgcm_contrib/llc_hires/llc_1080/code/SIZE.h_60x60x2872 SIZE.h
19    ../tools/genmake2 -of \
20     ../../MITgcm_contrib/llc_hires/llc_1080/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \
21     '../../MITgcm_contrib/llc_hires/llc_1080/code ../../MITgcm_contrib/llc_hires/llc_1080/code-async'
22    make depend
23    make -j 16
24    cd ~/llc_1080/MITgcm/run
25    ln -sf ../build/mitgcmuv .
26    ln -sf /nobackup/dmenemen/tarballs/llc_1080/run_template/* .
27    ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
28    cp ../../MITgcm_contrib/llc_hires/llc_1080/input/* .
29    mv data.exch2_60x60x2872 data.exch2
30    export MPI_NUM_MEMORY_REGIONS=256
31    mpiexec -n 3400 ./mitgcmuv
32    
33  ==============  ==============
34    # 90x90x1342 tile configuration
35    
36  cd ~/llc_1080  cd ~/llc_1080
37  cvs co MITgcm_code  cvs co MITgcm_code
38  cvs co MITgcm_contrib/llc_hires/llc_1080  cvs co MITgcm_contrib/llc_hires/llc_1080
39  cd MITgcm  cd MITgcm
40  module purge  module purge
41  module load comp-intel/2011.2 mpi-sgi/mpt.2.06a67 netcdf/4.0  module load comp-intel/2011.2 mpi-sgi/mpt.2.06r6 netcdf/4.0
42  mkdir build run  mkdir build run
43  lfs setstripe -c -1 run  lfs setstripe -c -1 run
44  cd build  cd build
# Line 25  cp ../../MITgcm_contrib/llc_hires/llc_10 Line 47  cp ../../MITgcm_contrib/llc_hires/llc_10
47   ../../MITgcm_contrib/llc_hires/llc_1080/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \   ../../MITgcm_contrib/llc_hires/llc_1080/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \
48   '../../MITgcm_contrib/llc_hires/llc_1080/code ../../MITgcm_contrib/llc_hires/llc_1080/code-async'   '../../MITgcm_contrib/llc_hires/llc_1080/code ../../MITgcm_contrib/llc_hires/llc_1080/code-async'
49  make depend  make depend
50  make -j 30  make -j 16
51  cd ../run  cd ../run
52  ln -sf ../build/mitgcmuv .  ln -sf ../build/mitgcmuv .
53  ln -sf /nobackup/dmenemen/tarballs/llc_1080/run_template/* .  ln -sf /nobackup/dmenemen/tarballs/llc_1080/run_template/* .
54  ln -sf /nobackup/dmenemen/forcing/era_interim/EIG_*_2* .  #ln -sf /nobackup/dmenemen/forcing/era_interim/EIG_*_2* .
55  ln -sf /nobackup/dmenemen/forcing/era_interim_corrected/EIG_dlw_sub5p_2* .  #ln -sf /nobackup/dmenemen/forcing/era_interim_corrected/EIG_dlw_sub5p_2* .
56    ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
57  cp ../../MITgcm_contrib/llc_hires/llc_1080/input/* .  cp ../../MITgcm_contrib/llc_hires/llc_1080/input/* .
58  mv data.exch2_90x90x1342 data.exch2  mv data.exch2_90x90x1342 data.exch2
59    export MPI_NUM_MEMORY_REGIONS=256
60  mpiexec -n 1600 ./mitgcmuv  mpiexec -n 1600 ./mitgcmuv
61    
62  ==============  ==============
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