/[MITgcm]/MITgcm_contrib/llc_hires/llc_1080/readme.txt
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revision 1.3 by dimitri, Sun Sep 29 22:43:00 2013 UTC revision 1.7 by dimitri, Sun Nov 3 05:18:56 2013 UTC
# Line 1  Line 1 
1  For interactive session, Ivy Bridge nodes:  For interactive session, Ivy Bridge nodes:
2  qsub -I -q devel -l select=24:ncpus=20:model=ivy,walltime=02:00:00  qsub -I -q devel -l select=170:ncpus=20:model=ivy,walltime=02:00:00 -m abe -M email
3  qsub -I -q long -l select=80:ncpus=20:model=ivy,walltime=120:00:00  qsub -I -q long  -l select=170:ncpus=20:model=ivy,walltime=120:00:00 -m abe -M email
4  qsub -I -q long -l select=:ncpus=20:model=ivy,min_walltime=30:00,max_walltime=120:00:00  qsub -I -q long  -l select=170:ncpus=20:model=ivy,min_walltime=30:00,max_walltime=120:00:00 -m abe -M email
   
 For batch submission:  
 qsub -q devel -l select=24:ncpus=20:model=ivy,walltime=02:00:00 runscript  
 qsub qsub_llc1080_468.csh  
5    
6  These will give you 24 x 20 = 480 cores.  ==============
7    # 60x60x2872 tile configuration
8    
9    cd ~/llc_1080
10    cvs co MITgcm_code
11    cvs co MITgcm_contrib/llc_hires/llc_1080
12    cd MITgcm
13    module purge
14    module load comp-intel/2012.0.032 mpi-sgi/mpt.2.08r7 netcdf/4.0
15    mkdir build run
16    lfs setstripe -c -1 run
17    cd build
18    cp ../../MITgcm_contrib/llc_hires/llc_1080/code/SIZE.h_60x60x2872 SIZE.h
19    ../tools/genmake2 -of \
20     ../../MITgcm_contrib/llc_hires/llc_1080/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \
21     '../../MITgcm_contrib/llc_hires/llc_1080/code ../../MITgcm_contrib/llc_hires/llc_1080/code-async'
22    make depend
23    make -j 16
24    cd ../run
25    ln -sf ../build/mitgcmuv .
26    ln -sf /nobackup/dmenemen/tarballs/llc_1080/run_template/* .
27    ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
28    cp ../../MITgcm_contrib/llc_hires/llc_1080/input/* .
29    mv data.exch2_60x60x2872 data.exch2
30    mpiexec -n 3400 ./mitgcmuv
31    
32  ==============  ==============
33    # 90x90x1342 tile configuration
34    
35  cd ~/llc_1080  cd ~/llc_1080
36  cvs co MITgcm_code  cvs co MITgcm_code
37  cvs co MITgcm_contrib/llc_hires/llc_1080  cvs co MITgcm_contrib/llc_hires/llc_1080
38  cd MITgcm  cd MITgcm
39  module purge  module purge
40  module load comp-intel/2011.2 mpi-sgi/mpt.2.06a67 netcdf/4.0  module load comp-intel/2011.2 mpi-sgi/mpt.2.06r6 netcdf/4.0
41  mkdir build run  mkdir build run
42  lfs setstripe -c -1 run  lfs setstripe -c -1 run
43  cd build  cd build
# Line 25  cp ../../MITgcm_contrib/llc_hires/llc_10 Line 46  cp ../../MITgcm_contrib/llc_hires/llc_10
46   ../../MITgcm_contrib/llc_hires/llc_1080/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \   ../../MITgcm_contrib/llc_hires/llc_1080/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \
47   '../../MITgcm_contrib/llc_hires/llc_1080/code ../../MITgcm_contrib/llc_hires/llc_1080/code-async'   '../../MITgcm_contrib/llc_hires/llc_1080/code ../../MITgcm_contrib/llc_hires/llc_1080/code-async'
48  make depend  make depend
49  make -j 30  make -j 16
50  cd ../run  cd ../run
51  ln -sf ../build/mitgcmuv .  ln -sf ../build/mitgcmuv .
52  ln -sf /nobackup/dmenemen/tarballs/llc_1080/run_template/* .  ln -sf /nobackup/dmenemen/tarballs/llc_1080/run_template/* .
53  ln -sf /nobackup/dmenemen/forcing/era_interim/EIG_*_2* .  #ln -sf /nobackup/dmenemen/forcing/era_interim/EIG_*_2* .
54  ln -sf /nobackup/dmenemen/forcing/era_interim_corrected/EIG_dlw_sub5p_2* .  #ln -sf /nobackup/dmenemen/forcing/era_interim_corrected/EIG_dlw_sub5p_2* .
55    ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
56  cp ../../MITgcm_contrib/llc_hires/llc_1080/input/* .  cp ../../MITgcm_contrib/llc_hires/llc_1080/input/* .
57  mv data.exch2_90x90x1342 data.exch2  mv data.exch2_90x90x1342 data.exch2
58  mpiexec -n 1600 ./mitgcmuv  mpiexec -n 1600 ./mitgcmuv
# Line 39  mpiexec -n 1600 ./mitgcmuv Line 61  mpiexec -n 1600 ./mitgcmuv
61    
62  look at output  look at output
63    
64  for ts=[1920:240:8880]  for ts=[50760]
65      fld=quikread_llc(['Eta.' myint2str(ts,10) '.data'],1080);      fld=quikread_llc(['Eta.' myint2str(ts,10) '.data'],1080);
66      clf,quikplot_llc(fld),caxis([-2.5 2]),thincolorbar      clf,quikplot_llc(fld),caxis([-2.5 2]),thincolorbar
67      title(ts)      title(ts)
68      pause(.1)      pause(.1)
69  end  end
70    
71  ts=14040;  ts=50760;
72  for fld={'S','T','U','V','W','HEFF'}  for fld={'S''T','U','V','W','HEFF'}
73      tmp=quikread_llc([fld{1} '.' myint2str(ts,10) '.data'],1080);      tmp=quikread_llc([fld{1} '.' myint2str(ts,10) '.data'],1080);
74      clf,quikplot_llc(tmp),thincolorbar      clf,quikplot_llc(tmp),thincolorbar
75      title(fld{1})      title(fld{1})
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