/[MITgcm]/MITgcm_contrib/llc_hires/llc_1080/readme.txt
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revision 1.6 by dimitri, Tue Oct 29 07:20:16 2013 UTC revision 1.13 by dimitri, Sat Feb 3 03:47:40 2018 UTC
# Line 1  Line 1 
1    ==============
2    # interactive 90x90x1342 tile configuration with newer MITgcm code
3    cd ~/llc_1080
4    cvs co MITgcm_contrib/llc_hires/llc_1080
5    cvs co -r checkpoint66h MITgcm_code
6    qsub -I -q long -l select=48:ncpus=28:model=bro,walltime=120:00:00 -m abe
7    module purge
8    module load comp-intel/2016.2.181 mpi-sgi/mpt.2.15r20
9    cd ~/llc_1080/MITgcm
10    mkdir build run
11    lfs setstripe -c -1 run
12    cd build
13    cp ../../MITgcm_contrib/llc_hires/llc_1080/code/SIZE.h_90x90x1342 SIZE.h
14    ../tools/genmake2 -of \
15     ../../MITgcm_contrib/llc_hires/llc_1080/code/linux_amd64_ifort+mpi_ice_nas \
16     -mpi -mods ../../MITgcm_contrib/llc_hires/llc_1080/code
17    make depend
18    make -j 56
19    cd ../run
20    ln -sf ../build/mitgcmuv .
21    ln -sf /nobackup/dmenemen/tarballs/llc_1080/run_template/* .
22    ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
23    ln -sf ~dmenemen/llc_1080/MITgcm/run_2011/pick*354240* .
24    cp ../../MITgcm_contrib/llc_hires/llc_1080/input/* .
25    mv data.exch2_90x90x1342 data.exch2
26    mpiexec -n 1342 ./mitgcmuv &
27    
28    ==============
29    # interactive 90x90x1342 tile configuration from scratch
30    cd ~/llc_1080
31    cvs co MITgcm_contrib/llc_hires/llc_1080
32    cvs co -r checkpoint64p MITgcm_code
33    qsub -I -q long -l select=48:ncpus=28:model=bro,walltime=120:00:00 -m abe
34    module purge
35    module load comp-intel/2016.2.181 mpi-sgi/mpt.2.15r20
36    cd ~/llc_1080/MITgcm
37    mkdir build run
38    lfs setstripe -c -1 run
39    cd build
40    cp ../../MITgcm_contrib/llc_hires/llc_1080/code/SIZE.h_90x90x1342 SIZE.h
41    ../tools/genmake2 -of \
42     ../../MITgcm_contrib/llc_hires/llc_1080/code/linux_amd64_ifort+mpi_ice_nas \
43     -mpi -mods ../../MITgcm_contrib/llc_hires/llc_1080/code
44    make depend
45    make -j 16
46    cd ../run
47    ln -sf ../build/mitgcmuv .
48    ln -sf /nobackup/dmenemen/tarballs/llc_1080/run_template/* .
49    ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
50    ln -sf ~dmenemen/llc_1080/MITgcm/run_2011/pick*354240* .
51    cp ../../MITgcm_contrib/llc_hires/llc_1080/input/* .
52    mv data.exch2_90x90x1342 data.exch2
53    mpiexec -n 1342 ./mitgcmuv &
54    
55    =====================
56  For interactive session, Ivy Bridge nodes:  For interactive session, Ivy Bridge nodes:
57  qsub -I -q devel -l select=24:ncpus=20:model=ivy,walltime=02:00:00 -m abe -M menemenlis@jpl.nasa.gov  qsub -I -q debug -l select=48:ncpus=28:model=bro,walltime=02:00:00 -m abe -M email
58  qsub -I -q long -l select=80:ncpus=20:model=ivy,walltime=120:00:00 -m abe -M menemenlis@jpl.nasa.gov  qsub -I -q devel -l select=170:ncpus=20:model=ivy,walltime=02:00:00 -m abe -M email
59  qsub -I -q long -l select=:ncpus=20:model=ivy,min_walltime=30:00,max_walltime=120:00:00  qsub -I -q long  -l select=170:ncpus=20:model=ivy,walltime=120:00:00 -m abe -M email
60  qsub -q ecco -I -W group_list=g26209 -l select=170:ncpus=20:aoe=sles11,walltime=100:00:00 -m abe -M menemenlis@jpl.nasa.gov  qsub -I -q long  -l select=170:ncpus=20:model=ivy,min_walltime=30:00,max_walltime=120:00:00 -m abe -M email
   
 For batch submission:  
 qsub -q devel -l select=24:ncpus=20:model=ivy,walltime=02:00:00 runscript  
 qsub qsub_llc1080_468.csh  
61    
62  ==============  ==============
63    # 60x60x2872 tile configuration
64    
65  cd ~/llc_1080  cd ~/llc_1080
66  cvs co MITgcm_code  cvs co -r checkpoint64p MITgcm_code
67  cvs co MITgcm_contrib/llc_hires/llc_1080  cvs co MITgcm_contrib/llc_hires/llc_1080
68  cd MITgcm  cd MITgcm
69  module purge  module purge
70  module load comp-intel/2012.0.032 mpi-sgi/mpt.2.06rp16  netcdf/4.0  module load comp-intel/2012.0.032 mpi-sgi/mpt.2.08r7 netcdf/4.0
71  mkdir build run  mkdir build run
72  lfs setstripe -c -1 run  lfs setstripe -c -1 run
73  cd build  cd build
# Line 25  cp ../../MITgcm_contrib/llc_hires/llc_10 Line 77  cp ../../MITgcm_contrib/llc_hires/llc_10
77   '../../MITgcm_contrib/llc_hires/llc_1080/code ../../MITgcm_contrib/llc_hires/llc_1080/code-async'   '../../MITgcm_contrib/llc_hires/llc_1080/code ../../MITgcm_contrib/llc_hires/llc_1080/code-async'
78  make depend  make depend
79  make -j 16  make -j 16
80  cd ../run  cd ~/llc_1080/MITgcm/run
81  ln -sf ../build/mitgcmuv .  ln -sf ../build/mitgcmuv .
82  ln -sf /nobackup/dmenemen/tarballs/llc_1080/run_template/* .  ln -sf /nobackup/dmenemen/tarballs/llc_1080/run_template/* .
83  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
84  cp ../../MITgcm_contrib/llc_hires/llc_1080/input/* .  cp ../../MITgcm_contrib/llc_hires/llc_1080/input/* .
85  mv data.exch2_60x60x2872 data.exch2  mv data.exch2_60x60x2872 data.exch2
86    export MPI_NUM_MEMORY_REGIONS=256
87  mpiexec -n 3400 ./mitgcmuv  mpiexec -n 3400 ./mitgcmuv
88    
89  ==============  ==============
90    # 90x90x1342 tile configuration
91    
92  cd ~/llc_1080  cd ~/llc_1080
93  cvs co MITgcm_code  cvs co MITgcm_code
# Line 58  ln -sf /nobackup/dmenemen/tarballs/llc_1 Line 112  ln -sf /nobackup/dmenemen/tarballs/llc_1
112  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
113  cp ../../MITgcm_contrib/llc_hires/llc_1080/input/* .  cp ../../MITgcm_contrib/llc_hires/llc_1080/input/* .
114  mv data.exch2_90x90x1342 data.exch2  mv data.exch2_90x90x1342 data.exch2
115    export MPI_NUM_MEMORY_REGIONS=256
116  mpiexec -n 1600 ./mitgcmuv  mpiexec -n 1600 ./mitgcmuv
117    
118  ==============  ==============
119    # 90x90x1342 tile test configuration
120    
121    cd ~/llc_1080_test
122    cvs co MITgcm_code
123    cvs co MITgcm_contrib/llc_hires/llc_1080
124    cd MITgcm
125    module purge
126    module load comp-intel/2016.2.181 mpi-sgi/mpt.2.15r20
127    mkdir build run
128    lfs setstripe -c -1 run
129    cd build
130    cp ../../MITgcm_contrib/llc_hires/llc_1080/code/SIZE.h_90x90x1342 SIZE.h
131    ../tools/genmake2 -of \
132     ../../MITgcm_contrib/llc_hires/llc_1080/code/linux_amd64_ifort+mpi_ice_nas \
133     -mpi -mods ../../MITgcm_contrib/llc_hires/llc_1080/code
134    make depend
135    make -j 16
136    cd ../run
137    ln -sf ../build/mitgcmuv .
138    ln -sf /nobackup/dmenemen/tarballs/llc_1080/run_template/* .
139    ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
140    cp ../../MITgcm_contrib/llc_hires/llc_1080/input/* .
141    mv data.exch2_90x90x1342 data.exch2
142    mpiexec -n 1342 ./mitgcmuv
143    
144    
145    ==============
146    
147  look at output  look at output
148    
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