/[MITgcm]/MITgcm_contrib/llc_hires/llc_1080/readme.txt
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revision 1.1 by dimitri, Fri Sep 20 12:19:58 2013 UTC revision 1.5 by dimitri, Fri Oct 25 21:56:22 2013 UTC
# Line 1  Line 1 
1  For interactive session, Ivy Bridge nodes:  For interactive session, Ivy Bridge nodes:
2  qsub -I -q devel -l select=24:ncpus=20:model=ivy,walltime=02:00:00  qsub -I -q devel -l select=24:ncpus=20:model=ivy,walltime=02:00:00 -m abe -M menemenlis@jpl.nasa.gov
3  qsub -I -q long -l select=24:ncpus=20:model=ivy,walltime=120:00:00  qsub -I -q long -l select=80:ncpus=20:model=ivy,walltime=120:00:00 -m abe -M menemenlis@jpl.nasa.gov
4    qsub -I -q long -l select=:ncpus=20:model=ivy,min_walltime=30:00,max_walltime=120:00:00
5    
6  For batch submission:  For batch submission:
7  qsub -q devel -l select=24:ncpus=20:model=ivy,walltime=02:00:00 runscript  qsub -q devel -l select=24:ncpus=20:model=ivy,walltime=02:00:00 runscript
8  qsub qsub_llc1080_468.csh  qsub qsub_llc1080_468.csh
9    
10  These will give you 24 x 20 = 480 cores. Launch 468 ranks with  These will give you 24 x 20 = 480 cores.
11    
12  ==============  ==============
13    
14    cd ~/llc_1080
15  cvs co MITgcm_code  cvs co MITgcm_code
16    cvs co MITgcm_contrib/llc_hires/llc_1080
17  cd MITgcm  cd MITgcm
18  module purge  module purge
19  module load comp-intel/2011.2 mpi-sgi/mpt.2.06a67 netcdf/4.0  module load comp-intel/2011.2 mpi-sgi/mpt.2.06a67 netcdf/4.0
 #module load comp-intel/2011.7.256 mpi-sgi/mpt.2.08r7 netcdf/4.0  
20  mkdir build run  mkdir build run
21    lfs setstripe -c -1 run
22  cd build  cd build
23  ../tools/genmake2 -of ~/tarballs/llc_1080/code/linux_amd64_ifort+mpi_ice_nas -mpi -mods ~/tarballs/llc_1080/code  cp ../../MITgcm_contrib/llc_hires/llc_1080/code/SIZE.h_90x90x1342 SIZE.h
24    ../tools/genmake2 -of \
25     ../../MITgcm_contrib/llc_hires/llc_1080/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \
26     '../../MITgcm_contrib/llc_hires/llc_1080/code ../../MITgcm_contrib/llc_hires/llc_1080/code-async'
27  make depend  make depend
28  make -j 16  make -j 30
29  cd ../run  cd ../run
30  ln -sf ../build/mitgcmuv .  ln -sf ../build/mitgcmuv .
31  ln -sf /nobackup/dmenemen/tarballs/llc_1080/run_template/* .  ln -sf /nobackup/dmenemen/tarballs/llc_1080/run_template/* .
32  ln -sf /nobackup/dmenemen/forcing/era_interim/EIG_*_2* .  #ln -sf /nobackup/dmenemen/forcing/era_interim/EIG_*_2* .
33  ln -sf /nobackup/dmenemen/forcing/era_interim_corrected/EIG_dlw_sub5p_2* .  #ln -sf /nobackup/dmenemen/forcing/era_interim_corrected/EIG_dlw_sub5p_2* .
34  cp /nobackup/dmenemen/tarballs/llc_1080/input/* .  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
35  mpiexec -n 379 ./mitgcmuv  cp ../../MITgcm_contrib/llc_hires/llc_1080/input/* .
36    mv data.exch2_90x90x1342 data.exch2
37    mpiexec -n 1600 ./mitgcmuv
38    
39  ==============  ==============
40    
41  look at output  look at output
42    
43  for ts=[1920:240:8880]  for ts=[50760]
44      fld=quikread_llc(['Eta.' myint2str(ts,10) '.data'],1080);      fld=quikread_llc(['Eta.' myint2str(ts,10) '.data'],1080);
45      clf,quikplot_llc(fld),caxis([-2.5 2]),thincolorbar      clf,quikplot_llc(fld),caxis([-2.5 2]),thincolorbar
46      title(ts)      title(ts)
47      pause(.1)      pause(.1)
48  end  end
49    
50  ts=14040;  ts=50760;
51  for fld={'S','T','U','V','W','HEFF'}  for fld={'S''T','U','V','W','HEFF'}
52      tmp=quikread_llc([fld{1} '.' myint2str(ts,10) '.data'],1080);      tmp=quikread_llc([fld{1} '.' myint2str(ts,10) '.data'],1080);
53      clf,quikplot_llc(tmp),thincolorbar      clf,quikplot_llc(tmp),thincolorbar
54      title(fld{1})      title(fld{1})
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