1 |
#! /usr/bin/env bash |
2 |
|
3 |
# $Header: /u/gcmpack/MITgcm_contrib/jmc_script/tst_2+2_cpl,v 1.14 2015/12/24 21:29:23 jmc Exp $ |
4 |
# $Name: $ |
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|
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rnp_loc() |
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{ |
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# rnp_loc arg_1 arg_2 |
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# rename files with prefix = 'arg_1' to files with prefix = 'arg_2' |
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if [ $prt -ge 1 ] ; then echo ' rnp_loc:' $1 $2 ; fi |
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# rnp -s $1 $2 |
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listY=`ls -1 $1*` |
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for yy in $listY |
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do |
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zz=`echo $yy | sed "s/^$1/$2/"` |
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if [ $prt -ge 2 ] ; then echo ' mv' $yy $zz ; fi |
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if test $action = 1 ; then mv $yy $zz ; fi |
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done |
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} |
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|
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dif_tiles() |
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{ |
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# dif_data_loc dd1 dd2 file |
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# for all tiles ==> do diff dd1/file dd2/file' |
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dd1=$1 ; dd2=$2 ; zz=$3 |
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chkmeta='N' |
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listY=`(cd $dd1 ; ls $zz.data | sed "s/\.data//") 2> /dev/null` |
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if test "x$listY" = "x$zz" ; then |
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echo '--> file='$zz' (global)' |
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echo diff $dd1/$zz.data $dd2 |
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diff $dd1/$zz.data $dd2 |
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out=$? |
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if test $out != 0 |
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then echo 'Diff outp=' $out ' ==> stop' |
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exit ; fi |
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if test $chkmeta = 'Y' ; then |
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echo diff $dd1/$zz.meta $dd2 |
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diff $dd1/$zz.meta $dd2 |
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out=$? |
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if test $out != 0 ; then echo 'Diff outp=' $out ' ==> stop' ; exit ; fi |
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fi |
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return |
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fi |
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listY=`(cd $dd1 ; ls $zz.*.data | sed "s/$zz\.//" | sed "s/\.data//")` |
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echo '--> file='$zz', listY='$listY |
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for yy in $listY |
47 |
do |
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echo diff $dd1/$zz.$yy.data $dd2 |
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diff $dd1/$zz.$yy.data $dd2 |
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out=$? |
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if test $out != 0 |
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then echo 'Diff outp=' $out ' ==> stop' |
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exit ; fi |
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if test $chkmeta = 'Y' ; then |
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echo diff $dd1/$zz.$yy.meta $dd2 |
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diff $dd1/$zz.$yy.meta $dd2 |
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out=$? |
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if test $out != 0 ; then echo 'Diff outp=' $out ' ==> stop' ; exit ; fi |
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fi |
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done |
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} |
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|
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move_outp() |
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{ |
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# move_outp arg_1 |
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# move mitgcm output files to directory 'arg_1' |
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if [ $prt -ge 1 ] ; then echo ' move_outp:' $1 ; fi |
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mv *.data *.meta $1 |
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listF=`ls -1 *.txt STD???.0000 *.log 2> /dev/null` |
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if test "x$listF" != x ; then mv $listF $1 ; fi |
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#- move back sym link: |
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listL=`find $1 -type l` |
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ttd=`echo $listL | wc -w` |
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#echo "ttd=$ttd" |
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if test $ttd != 0 ; then |
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#echo "listL='$listL'" |
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shortList=`ls $listL | sed "s|$1/||"` |
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if [ $prt -ge 2 ] ; then echo " mv back:" $shortList ; fi |
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mv $listL . |
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fi |
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} |
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|
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#---------------------------------------------------------------------- |
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|
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prepare_first() |
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{ |
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# prepare_first arg_1 arg_2 arg_3 |
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#----------------------------------------------------------- |
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# from a previous run in "arg_2" dir: collect info for |
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# test: arg_1 (iters) + arg_1 (iter) = 2x arg_1 (iter) ; |
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# move output files from "arg_2" dir to 'arg_3" dir ; |
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# create "data.tst" in arg_2 dir ; |
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# and prepare pickup and params file for 1rst run. |
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#----------------------------------------------------------- |
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|
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nIt=$1 ; dFr=$2 ; dTo=$3 |
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if [ $prt -ge 1 ] ; then |
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echo " run 'prepare_first' : nIt=$nIt, from '$dFr' to '$dTo'" ; fi |
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outpRun="$dFr/STDOUT.0000" |
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#- last pickup written (from previous run): |
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if test -r $outpRun |
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then |
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# grep ' %CHECKPOINT ' $outpRun | tail -1 |
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lastPick=`grep ' %CHECKPOINT ' $outpRun | sed 's/^.*%CHECKPOINT //' | tail -1` |
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if test "x$lastPick" = x |
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then |
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echo "no pickup information written in '$outpRun' from previous run" |
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exit 8 |
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else |
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iter=`echo $lastPick | awk '{print $1}'` |
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sufx=`echo $lastPick | awk '{print $2}'` |
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echo " from '$outpRun' : lastPick='$lastPick' > iter='$iter', sufx='$sufx'" |
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fi |
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else |
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echo "no standard output file '$outpRun' from previous run" |
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exit 7 |
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fi |
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#- create parameter file "data.tst": |
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echo " preparing parameter file 'data.tst' :" |
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pFile="$dFr/data.tst" |
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if test -h $pFile ; then rm -f $pFile ; fi |
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cp -p -f $dFr/data $pFile |
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listOut='startTime endTime nIter0 nTimeSteps nEndIter chkPtFreq pChkPtFreq' |
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listOut=$listOut' pickupSuff usePickupBeforeC54 mdsioLocalDir pickupStrictlyMatch' |
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#- comment out (in data.tst) all parameters from list: 'listOut' |
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for yy in $listOut |
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do |
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if [ $prt -ge 2 ] ; then echo -n ' commenting out:' $yy ; fi |
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nn=`grep -i -c "^ *$yy *=" $pFile` |
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if [ $nn -ge 1 ] |
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then |
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listN=`grep -i -n "^ *$yy *=" $pFile | sed 's/:.*$//'` |
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if [ $prt -ge 2 ] ; then echo " : found on line: $listN" ; fi |
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for ll in $listN |
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do |
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sed "$ll s/^./#&/" $pFile > data.tmp_$$ |
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#diff data.tmp_$$ $pFile |
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mv -f data.tmp_$$ $pFile |
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done |
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else if [ $prt -ge 2 ] ; then echo ' : not found' ; fi |
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fi |
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done |
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if [ $prt -ge 2 ] ; then echo ' ' ; fi |
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# add nIter0 & nTimeSteps in namelist "PARM03": |
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Dbl=`expr $nIt \* 2` |
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sed "/^ *\&PARM03/a \ nTimeSteps=$Dbl," $pFile > data.tmp_$$ |
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mv -f data.tmp_$$ $pFile |
148 |
sed "/^ *\&PARM03/a \ nIter0=$iter," $pFile > data.tmp_$$ |
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mv -f data.tmp_$$ $pFile |
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echo "preparing file '$pFile' : done" |
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if [ $prt -ge 1 ] ; then |
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echo " diff $pFile $dFr/data" ; diff $pFile $dFr/data ; echo ' ' ; |
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fi |
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#---- clean up current dir: move output to temp_tst dir: |
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if test $action = 1 ; then |
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( cd $dFr ; move_outp ../$dTo ) |
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listF=`ls -1 $dFr/STD???.0[0-9][0-9][0-9] 2> /dev/null` |
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if test "x$listF" != x ; then mv $listF $dTo ; fi |
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#- move main parameter file "data": |
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mv $dFr/data $dTo |
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#- do not deal with MNC pickup at all: |
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cp -p -f $dFr/data.pkg data.tmp_$$ |
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mv -f $dFr/data.pkg $dTo |
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mv -f data.tmp_$$ $dFr/data.pkg |
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yy='useMNC' |
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if [ $prt -ge 2 ] ; then echo -n " commenting out: $yy in data.pkg" ; fi |
167 |
nn=`grep -i -c "^ *$yy *=" $dFr/data.pkg` |
168 |
if [ $nn -ge 1 ] ; then |
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listN=`grep -i -n "^ *$yy *=" $dFr/data.pkg | sed 's/:.*$//'` |
170 |
if [ $prt -ge 2 ] ; then echo " : found on line: $listN" ; fi |
171 |
for ll in $listN |
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do |
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sed "$ll s/^./#&/" $dFr/data.pkg > data.tmp_$$ |
174 |
if [ $prt -ge 1 ] ; then echo ' changes in data.pkg' |
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diff data.tmp_$$ $dFr/data.pkg ; echo ' ' ; fi |
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mv -f data.tmp_$$ $dFr/data.pkg |
177 |
done |
178 |
else if [ $prt -ge 2 ] ; then echo ' : not found' ; echo ' ' ; fi |
179 |
fi |
180 |
#-- link back pickup files |
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listS=`ls $dTo/pickup*.${sufx}.* 2> /dev/null | head -1` |
182 |
if test "x$listS" != x ; then |
183 |
if [ $prt -ge 1 ] ; then echo ' link back:' ../$dTo'/pickup*.'${sufx}'*' ; fi |
184 |
( cd $dFr ; ln -s ../$dTo/pickup*.${sufx}* . ) |
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fi |
186 |
#- rename pickup (if needed) |
187 |
nIt0c=`printf "%10.10i\n" $iter` |
188 |
if test $sufx = $nIt0c |
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then |
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echo "no need to change pickup sufix" |
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else |
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listP=`(cd $dFr ; ls pickup*.${sufx}* 2> /dev/null | sed 's/\..*//g' | uniq )` |
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if test "x$listP" = x |
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then echo ' rename' $sufx '->' $nIt0c ': no file to rename' |
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else |
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if [ $prt -ge 1 ] ; then echo ' rename' $sufx '->' $nIt0c 'for all:' $listP ; fi |
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( cd $dFr ; for yy in $listP |
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do rnp_loc $yy.${sufx} $yy.$nIt0c |
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done ) |
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fi |
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fi |
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fi |
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#---------------------------------------------------------------------- |
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} |
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|
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#=============================================================================== |
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#-- sequential part start here |
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#=============================================================================== |
209 |
|
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#- default: |
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Nit=2 |
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prt=1 # 1 = print some informations ; 2 = print more informations |
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action=1 |
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tmpDir='temp_tst' |
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|
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pickRef='pickup' |
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# offLine=`grep -i -c '^ *useOffLine *= *\.TRUE\.' data.pkg` |
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# if [ $offLine -ge 1 ] ; then pickRef='pickup_ptracers' ; fi |
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|
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#- dir where to put the results : |
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dir1=res_2it |
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dir2=res_1iA |
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dir3=res_1iB |
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|
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#- get number of procs from file "pr_group": |
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if test -f pr_group ; then |
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Npr=`cat pr_group | wc -l` |
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NpOc=`grep -c '\/build_ocn\/mitgcmuv' pr_group` |
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else echo " file: 'pr_group' not found" |
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Npr=0 |
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fi |
232 |
|
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#- parse options: |
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CMD='run_cpl_test' |
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MTH= |
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argList=$* |
237 |
for xx in $argList |
238 |
do |
239 |
if test $xx = '-mth' ; then MTH=$xx ; shift ; continue ; fi |
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if test -x ${CMD}.$xx ; then CMD="${CMD}.$xx" ; shift ; continue ; fi |
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done |
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|
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if [ $# -ne 1 ] ; then |
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echo "Usage: `basename $0` [opt] flag" |
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echo " Check restart of coupled set-up: compare 1 run of 2 x $Nit it long" |
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echo " with 2 consecutive runs of $Nit it long each" |
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echo "opt = -mth : run script '$CMD' with option '-mth'" |
248 |
echo "opt = sufx : run script 'run_cpl_test.{sufx}'" |
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echo " where: flag = 0 -> prepare for 1rst run" |
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echo " flag = r1 -> do 1rst run and step 1" |
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echo " flag = 1 -> move res. after 1rst run & prepare for 2nd" |
252 |
echo " flag = r2 -> do 2nd run and step 2" |
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echo " flag = 2 -> move res. after 2nd run & prepare for 3rd" |
254 |
echo " flag = r3 -> do 3rd run and step 3" |
255 |
echo " flag = 3 -> move res. after 3rd run" |
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echo " flag=(r)N+ , N=1,2,3 => do steps (+run) from: (r)N to 3" |
257 |
echo " flag = 4 -> compare Ocean results" |
258 |
echo " flag = 5 -> compare Atmos results" |
259 |
echo " flag = 6 -> diff pickup files" |
260 |
echo " flag = 7 -> clean-up output files" |
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exit |
262 |
fi |
263 |
arg1=$1 |
264 |
xx=`echo $arg1 | sed 's/\+$//'` |
265 |
if test $xx != $arg1 |
266 |
then kUp=`echo $xx | sed 's/^r//'` ; arg1=$xx |
267 |
else kUp=9 ; fi |
268 |
xx=`echo $arg1 | sed 's/^r//'` |
269 |
if test $xx != $arg1 ; then doRun=1 ; arg1=$xx ; else doRun=0 ; fi |
270 |
ksel=$arg1 |
271 |
|
272 |
if test -x ${CMD} ; then |
273 |
CMD="./${CMD} $MTH 3" |
274 |
else |
275 |
if test -x ../../tools/${CMD} ; then |
276 |
CMD="../../tools/${CMD} $MTH 3" |
277 |
else |
278 |
echo " no test-script '${CMD}' found neither here nor in '../../tools/'" |
279 |
exit |
280 |
fi |
281 |
fi |
282 |
echo " doRun='$doRun' ; ksel='$ksel' ; kUp='$kUp' ; command='$CMD'" |
283 |
|
284 |
#- set dir of Master-Proc for 3 components (coupler == rank_0): |
285 |
if test $Npr = 0 ; then |
286 |
echo " needs file: 'pr_group' to continue" ; exit |
287 |
fi |
288 |
rnkO=1 ; rnkA=`expr $rnkO + $NpOc` |
289 |
|
290 |
#make sure that local dir & ~jmc/bin is in the path: |
291 |
#export PATH=${PATH}:. |
292 |
|
293 |
#---------------------------------------------------------------------- |
294 |
|
295 |
if test $ksel = 0 ; then |
296 |
#-- from STDOUT of previous run, get Nb of iters for each component, |
297 |
yy='(PID.TID 0000.0001) nTimeSteps = ' |
298 |
outpRun="rank_$rnkO/STDOUT.0000" |
299 |
nTsO=`grep -A1 "$yy" $outpRun | tail -1 | sed 's/(PID.TID 0000.0001) *//'` |
300 |
outpRun="rank_$rnkA/STDOUT.0000" |
301 |
nTsA=`grep -A1 "$yy" $outpRun | tail -1 | sed 's/(PID.TID 0000.0001) *//'` |
302 |
#- then calculate the ratio and set Nb of time-step for Atmos comp. |
303 |
RatioTs=`expr $nTsA / $nTsO` |
304 |
if [ $prt -ge 1 ] ; then echo " nTsA= $nTsA , nTsO= $nTsO , Ratio= $RatioTs"; fi |
305 |
NiOc=$Nit ; |
306 |
NiAt=`expr $NiOc \* $RatioTs` |
307 |
#---- clean up current dir: rename pickup files and move output to temp_tst dir: |
308 |
/bin/rm -rf $tmpDir.0 $tmpDir.1 $tmpDir.2 |
309 |
mkdir $tmpDir.0 $tmpDir.1 $tmpDir.2 |
310 |
mv std_outp rank_0/*.clog $tmpDir.0 |
311 |
mv rank_$rnkO/*.0001.clog $tmpDir.0 |
312 |
mv rank_$rnkA/*.0001.clog $tmpDir.0 |
313 |
echo ' ' |
314 |
echo "=> prepare OCN dir:" |
315 |
prepare_first $NiOc rank_$rnkO $tmpDir.1 |
316 |
echo "=> prepare ATM dir:" |
317 |
prepare_first $NiAt rank_$rnkA $tmpDir.2 |
318 |
#-- prepare for running Dbl |
319 |
echo '=> prepare for running Dbl:' |
320 |
Dbl=`expr $NiOc + $NiOc` |
321 |
cp -p rank_$rnkO/data.tst rank_$rnkO/data |
322 |
cp -p rank_$rnkA/data.tst rank_$rnkA/data |
323 |
egrep 'nIter0|nTimeSteps' rank_$rnkO/data rank_$rnkA/data |
324 |
fi |
325 |
|
326 |
#---------------------------------------------------------------------- |
327 |
|
328 |
#- extract length of runs & starting iter number from file "data.tst" |
329 |
# Nit = Nb of iter of 2nd & 3rd run (1rst one is 2 x Nit iter long) |
330 |
pFile="rank_$rnkO/data.tst" |
331 |
if test -f $pFile ; then |
332 |
noc0=`sed -n 's/^ nIter0=//p' $pFile | sed 's/,//g' | sed 's/ //g'` |
333 |
Dbl=`sed -n 's/^ nTimeSteps=//p' $pFile | sed 's/,//g'` |
334 |
NiOc=`expr $Dbl / 2` |
335 |
Nit=$NiOc |
336 |
else echo " file: '$pFile' not found" |
337 |
NiOc=0 ; Nit=2 |
338 |
fi |
339 |
pFile="rank_$rnkA/data.tst" |
340 |
if test -f $pFile ; then |
341 |
nat0=`sed -n 's/^ nIter0=//p' $pFile | sed 's/,//g' | sed 's/ //g'` |
342 |
Dbl=`sed -n 's/^ nTimeSteps=//p' $pFile | sed 's/,//g'` |
343 |
NiAt=`expr $Dbl / 2` |
344 |
else echo " file: '$pFile' not found" |
345 |
NiAt=0 |
346 |
fi |
347 |
if test $NiAt = 0 -o $NiOc = 0 ; then |
348 |
echo " needs 2 data files: 'rank_$rnkO/data.tst' & 'rank_$rnkA/data.tst'" |
349 |
echo " (corresponding to 1rst run) to continue" |
350 |
exit |
351 |
fi |
352 |
|
353 |
nit=$NiOc |
354 |
Dbl=`expr $nit + $nit` |
355 |
noc1=`expr $noc0 + $nit` |
356 |
noc2=`expr $noc0 + $Dbl` |
357 |
noc0c=`printf "%10.10i\n" $noc0` |
358 |
noc1c=`printf "%10.10i\n" $noc1` |
359 |
noc2c=`printf "%10.10i\n" $noc2` |
360 |
echo " Oce (rank_$rnkO):" $noc0 $noc1 $noc2 |
361 |
echo " " $noc0c $noc1c $noc2c |
362 |
|
363 |
nit=$NiAt |
364 |
Dbl=`expr $nit + $nit` |
365 |
nat1=`expr $nat0 + $nit` |
366 |
nat2=`expr $nat0 + $Dbl` |
367 |
nat0c=`printf "%10.10i\n" $nat0` |
368 |
nat1c=`printf "%10.10i\n" $nat1` |
369 |
nat2c=`printf "%10.10i\n" $nat2` |
370 |
echo " Atm (rank_$rnkA):" $nat0 $nat1 $nat2 |
371 |
echo " " $nat0c $nat1c $nat2c |
372 |
|
373 |
#---------------------------------------------------------------------- |
374 |
|
375 |
#-- run & post-process Dbl: |
376 |
if [ $ksel -eq 1 -o $kUp -le 1 ] ; then |
377 |
echo ' ' |
378 |
#-- run coupled test (Dbl): |
379 |
if [ $doRun -eq 1 -o $kUp -lt 1 ] ; then |
380 |
echo "=> run (Dbl): $CMD" |
381 |
$CMD |
382 |
fi |
383 |
#-- after running Dbl: |
384 |
#- check for pickup |
385 |
listOc=`ls -1 rank_$rnkO/$pickRef.ckptA*.data 2> /dev/null` |
386 |
listAt=`ls -1 rank_$rnkA/$pickRef.ckptA*.data 2> /dev/null` |
387 |
if test "x$listOc" = x -o "x$listAt" = x |
388 |
then echo "==> RUN 2 x $NiOc it STOP without writing $pickRef => exit" ; exit 1 |
389 |
else echo "==> END RUN 2 x $NiOc it" ; fi |
390 |
#- move output |
391 |
rm -rf $dir1 |
392 |
mkdir $dir1 |
393 |
echo '=> move STDOUT to' $dir1 |
394 |
mv std_outp rank_0/*.0000.clog rank_$rnkO/*.0001.clog rank_$rnkA/*.0001.clog $dir1 |
395 |
mv rank_$rnkO/STDOUT.0000 $dir1/ocnSTDOUT.0000 |
396 |
mv rank_$rnkA/STDOUT.0000 $dir1/atmSTDOUT.0000 |
397 |
|
398 |
mkdir $dir1/ocn |
399 |
cd rank_$rnkO |
400 |
listP=`ls pickup*.ckptA* | sed 's/\..*//g' | uniq` |
401 |
echo ' listP=' $listP |
402 |
for xx in $listP ; do rnp_loc $xx.ckptA $xx.$noc2c ; done |
403 |
echo 'move output to' $dir1/ocn |
404 |
move_outp ../$dir1/ocn |
405 |
cd .. |
406 |
|
407 |
mkdir $dir1/atm |
408 |
cd rank_$rnkA |
409 |
listP=`ls pickup*.ckptA* | sed 's/\..*//g' | uniq` |
410 |
echo ' listP=' $listP |
411 |
for xx in $listP ; do rnp_loc $xx.ckptA $xx.$nat2c ; done |
412 |
echo 'move output to' $dir1/atm |
413 |
move_outp ../$dir1/atm |
414 |
cd .. |
415 |
|
416 |
#-- prepare for running 1iA |
417 |
echo '=> prepare for running 1iA:' |
418 |
nit=$NiOc ; Dbl=`expr $nit + $nit` |
419 |
pFile=rank_$rnkO/data |
420 |
sed "s/^ nTimeSteps=$Dbl/ nTimeSteps=$nit/g" $pFile.tst > $pFile |
421 |
nit=$NiAt ; Dbl=`expr $nit + $nit` |
422 |
pFile=rank_$rnkA/data |
423 |
sed "s/^ nTimeSteps=$Dbl/ nTimeSteps=$nit/g" $pFile.tst > $pFile |
424 |
egrep 'nIter0|nTimeSteps' rank_$rnkO/data rank_$rnkA/data |
425 |
fi |
426 |
|
427 |
#-- run & post-process 1iA: |
428 |
if [ $ksel -eq 2 -o $kUp -le 2 ] ; then |
429 |
echo ' ' |
430 |
#-- run coupled test (1iA): |
431 |
if [ $doRun -eq 1 -o $kUp -lt 2 ] ; then |
432 |
echo "=> run (1iA): $CMD" |
433 |
$CMD |
434 |
fi |
435 |
#-- after running 1iA |
436 |
#- check for pickup |
437 |
listOc=`ls -1 rank_$rnkO/$pickRef.ckptA*.data 2> /dev/null` |
438 |
listAt=`ls -1 rank_$rnkA/$pickRef.ckptA*.data 2> /dev/null` |
439 |
if test "x$listOc" = x -o "x$listAt" = x |
440 |
then echo "==> RUN 1iA STOP without writing $pickRef => exit" ; exit 2 |
441 |
else echo "==> END RUN 1iA" ; fi |
442 |
#- move output |
443 |
rm -rf $dir2 |
444 |
mkdir $dir2 |
445 |
echo '=> move STDOUT to' $dir2 |
446 |
mv std_outp rank_0/*.clog rank_$rnkO/*.clog rank_$rnkA/*.clog $dir2 |
447 |
mv rank_$rnkO/STDOUT.0000 $dir2/ocnSTDOUT.0000 |
448 |
mv rank_$rnkA/STDOUT.0000 $dir2/atmSTDOUT.0000 |
449 |
|
450 |
mkdir $dir2/ocn |
451 |
cd rank_$rnkO |
452 |
listP=`ls pickup*.ckptA* | sed 's/\..*//g' | uniq` |
453 |
echo ' listP=' $listP |
454 |
for xx in $listP ; do rnp_loc $xx.ckptA $xx.$noc1c ; done |
455 |
# remove pickup*.$noc0c* sym-link: |
456 |
find . ! -name . -prune -type l -name 'pickup*.'${noc0c}'*' -exec rm {} \; |
457 |
echo 'move output to' $dir2/ocn |
458 |
move_outp ../$dir2/ocn |
459 |
cd .. |
460 |
|
461 |
mkdir $dir2/atm |
462 |
cd rank_$rnkA |
463 |
listP=`ls pickup*.ckptA* | sed 's/\..*//g' | uniq` |
464 |
echo ' listP=' $listP |
465 |
for xx in $listP ; do rnp_loc $xx.ckptA $xx.$nat1c ; done |
466 |
# remove pickup*.$nat0c* sym-link: |
467 |
find . ! -name . -prune -type l -name 'pickup*.'${nat0c}'*' -exec rm {} \; |
468 |
echo 'move output to' $dir2/atm |
469 |
move_outp ../$dir2/atm |
470 |
cd .. |
471 |
|
472 |
#-- prepare for running 1iB |
473 |
echo '=> prepare for running 1iB:' |
474 |
cd rank_$rnkO |
475 |
ln -s ../$dir2/ocn/pickup*.$noc1c.* . |
476 |
sed "s/^ nIter0=$noc0/ nIter0=$noc1/g" data > data.tmp_$$ |
477 |
mv -f data.tmp_$$ data |
478 |
cd ../rank_$rnkA |
479 |
ln -s ../$dir2/atm/pickup*.$nat1c.* . |
480 |
sed "s/^ nIter0=$nat0/ nIter0=$nat1/g" data > data.tmp_$$ |
481 |
mv -f data.tmp_$$ data |
482 |
cd .. |
483 |
egrep 'nIter0|nTimeSteps' rank_$rnkO/data rank_$rnkA/data |
484 |
fi |
485 |
|
486 |
#-- run & post-process 1iB: |
487 |
if [ $ksel -eq 3 -o $kUp -le 3 ] ; then |
488 |
echo ' ' |
489 |
#-- run coupled test (1iB): |
490 |
if [ $doRun -eq 1 -o $kUp -lt 3 ] ; then |
491 |
echo "=> run (1iB): $CMD" |
492 |
$CMD |
493 |
fi |
494 |
#-- after running 1iB |
495 |
#- check for pickup |
496 |
listOc=`ls -1 rank_$rnkO/$pickRef.ckptA*.data 2> /dev/null` |
497 |
listAt=`ls -1 rank_$rnkA/$pickRef.ckptA*.data 2> /dev/null` |
498 |
if test "x$listOc" = x -o "x$listAt" = x |
499 |
then echo "==> RUN 1iB STOP without writing $pickRef => exit" ; exit 3 |
500 |
else echo "==> END RUN 1iB" ; fi |
501 |
#- move output |
502 |
rm -rf $dir3 |
503 |
mkdir $dir3 |
504 |
echo '=> move STDOUT to' $dir3 |
505 |
mv std_outp rank_0/*.clog rank_$rnkO/*.clog rank_$rnkA/*.clog $dir3 |
506 |
mv rank_$rnkO/STDOUT.0000 $dir3/ocnSTDOUT.0000 |
507 |
mv rank_$rnkA/STDOUT.0000 $dir3/atmSTDOUT.0000 |
508 |
|
509 |
mkdir $dir3/ocn |
510 |
cd rank_$rnkO |
511 |
listP=`ls pickup*.ckptA* | sed 's/\..*//g' | uniq` |
512 |
echo ' listP=' $listP |
513 |
for xx in $listP ; do rnp_loc $xx.ckptA $xx.$noc2c ; done |
514 |
# remove pickup*.$noc1c* sym-link: |
515 |
find . ! -name . -prune -type l -name 'pickup*.'${noc1c}'*' -exec rm {} \; |
516 |
echo 'move output to' $dir3/ocn |
517 |
move_outp ../$dir3/ocn |
518 |
cd .. |
519 |
|
520 |
mkdir $dir3/atm |
521 |
cd rank_$rnkA |
522 |
listP=`ls pickup*.ckptA* | sed 's/\..*//g' | uniq` |
523 |
echo ' listP=' $listP |
524 |
for xx in $listP ; do rnp_loc $xx.ckptA $xx.$nat2c ; done |
525 |
# remove pickup*.$nat1c* sym-link: |
526 |
find . ! -name . -prune -type l -name 'pickup*.'${nat1c}'*' -exec rm {} \; |
527 |
echo 'move output to' $dir3/atm |
528 |
move_outp ../$dir3/atm |
529 |
cd .. |
530 |
|
531 |
fi |
532 |
|
533 |
#-- compare output: |
534 |
if test $ksel = 4 ; then |
535 |
rm -f ocn.txt |
536 |
echo ' run 2it: ---------- ' > tmp1.txt |
537 |
grep "cg2d_init_res" $dir1/ocnSTDOUT.0000 \ |
538 |
| sed 's/.* cg2d_init_res =//' >> tmp1.txt |
539 |
nit=`expr $NiOc + 2` |
540 |
#echo "NiOc= $NiOc ; nit= $nit" |
541 |
sed "$nit i \ ... 2it continue ..." tmp1.txt > tmp2.txt |
542 |
rm -f tmp1.txt |
543 |
echo ' run 1iA: ---------- ' > tmp1.txt |
544 |
grep "cg2d_init_res" $dir2/ocnSTDOUT.0000 \ |
545 |
| sed 's/.* cg2d_init_res =//' >> tmp1.txt |
546 |
echo ' run 1iB: ---------- ' >> tmp1.txt |
547 |
grep "cg2d_init_res" $dir3/ocnSTDOUT.0000 \ |
548 |
| sed 's/.* cg2d_init_res =//' >> tmp1.txt |
549 |
nl tmp1.txt > tmp1.ttt |
550 |
nl tmp2.txt > tmp2.ttt |
551 |
join tmp1.ttt tmp2.ttt | sed 's/[0-9]*//' > ocn.txt |
552 |
rm -f tmp1.ttt tmp2.ttt tmp1.txt tmp2.txt |
553 |
echo ' ' ; echo '-- compare cg2d_init_res (Ocean):' |
554 |
cat ocn.txt |
555 |
exit |
556 |
fi |
557 |
|
558 |
if test $ksel = 5 ; then |
559 |
rm -f atm.txt |
560 |
echo ' run 2it: ---------- ' > tmp1.txt |
561 |
grep "cg2d_init_res" $dir1/atmSTDOUT.0000 \ |
562 |
| sed 's/.* cg2d_init_res =//' >> tmp1.txt |
563 |
nit=`expr $NiAt + 2` |
564 |
sed "$nit i \ ... 2it continue ..." tmp1.txt > tmp2.txt |
565 |
rm -f tmp1.txt |
566 |
echo ' run 1iA: ---------- ' > tmp1.txt |
567 |
grep "cg2d_init_res" $dir2/atmSTDOUT.0000 \ |
568 |
| sed 's/.* cg2d_init_res =//' >> tmp1.txt |
569 |
echo ' run 1iB: ---------- ' >> tmp1.txt |
570 |
grep "cg2d_init_res" $dir3/atmSTDOUT.0000 \ |
571 |
| sed 's/.* cg2d_init_res =//' >> tmp1.txt |
572 |
nl tmp1.txt > tmp1.ttt |
573 |
nl tmp2.txt > tmp2.ttt |
574 |
join tmp1.ttt tmp2.ttt | sed 's/[0-9]*//' > atm.txt |
575 |
rm -f tmp1.ttt tmp2.ttt tmp1.txt tmp2.txt |
576 |
echo ' ' ; echo '-- compare cg2d_init_res (Atmos):' |
577 |
cat atm.txt |
578 |
exit |
579 |
fi |
580 |
|
581 |
#- compare pickup file: |
582 |
if test $ksel = 6 ; then |
583 |
echo ' ' ; echo '=== compare Ocn pickups: ==============' |
584 |
listP=`( cd $dir1/ocn ; ls pickup*.$noc2c* | sed 's/\..*//g' | uniq )` |
585 |
for xx in $listP |
586 |
do |
587 |
dif_tiles $dir1/ocn $dir3/ocn $xx.$noc2c |
588 |
done |
589 |
echo ' ' ; echo '=== compare Atm pickups: ==============' |
590 |
listP=`( cd $dir1/atm ; ls pickup*.$nat2c* | sed 's/\..*//g' | uniq )` |
591 |
for xx in $listP |
592 |
do |
593 |
dif_tiles $dir1/atm $dir3/atm $xx.$nat2c |
594 |
done |
595 |
exit |
596 |
fi |
597 |
|
598 |
#- clean-up and reset: |
599 |
if test $ksel = 7 ; then |
600 |
echo "== clean-up and reset :" |
601 |
cd rank_$rnkO |
602 |
listS=`find . ! -name . -prune -type l -name 'pickup*.'${noc0c}'*'` |
603 |
if test "x$listS" != x ; then |
604 |
echo '--> remove pickup*.'$noc0c'* sym-links:' |
605 |
if [ $prt -ge 2 ] ; then echo " in rank_$rnkO: rm" $listS ; fi |
606 |
rm -f $listS |
607 |
fi |
608 |
cd ../rank_$rnkA |
609 |
listS=`find . ! -name . -prune -type l -name 'pickup*.'${nat0c}'*'` |
610 |
if test "x$listS" != x ; then |
611 |
echo '--> remove pickup*.'$nat0c'* sym-links:' |
612 |
if [ $prt -ge 2 ] ; then echo " in rank_$rnkA: rm" $listS ; fi |
613 |
rm -f $listS |
614 |
fi |
615 |
cd .. |
616 |
#- move back files from temp_tst dir: |
617 |
echo '=> restore std data files' |
618 |
rm -f rank_{$rnkO,$rnkA}/data |
619 |
rm -f rank_{$rnkO,$rnkA}/data.tst |
620 |
rm -f rank_{$rnkO,$rnkA}/data.pkg |
621 |
mv $tmpDir.0/*Ocean.0001.clog $tmpDir.1/* rank_$rnkO |
622 |
mv $tmpDir.0/*Atmos.0001.clog $tmpDir.2/* rank_$rnkA |
623 |
mv $tmpDir.0/std_outp . |
624 |
mv $tmpDir.0/* rank_0 |
625 |
rmdir $tmpDir.0 $tmpDir.1 $tmpDir.2 |
626 |
#echo '--> remove output dir and output files:' |
627 |
echo ' rm -rf' $dir1 $dir2 $dir3 |
628 |
rm -rf $dir1 $dir2 $dir3 |
629 |
rm -f atm.txt ocn.txt |
630 |
exit |
631 |
fi |