| 1 |
#! /usr/bin/env bash |
| 2 |
|
| 3 |
# $Header: /u/gcmpack/MITgcm_contrib/jmc_script/tst_2+2_cpl,v 1.7 2009/12/26 23:43:22 jmc Exp $ |
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# $Name: $ |
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|
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rnp_loc() |
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{ |
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# rnp_loc arg_1 arg_2 |
| 9 |
# rename files with prefix = 'arg_1' to files with prefix = 'arg_2' |
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echo 'rnp_loc:' $1 $2 |
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# rnp -s $1 $2 |
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listY=`ls -1 $1*` |
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for yy in $listY |
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do |
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zz=`echo $yy | sed "s/^$1/$2/"` |
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mv $yy $zz |
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done |
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} |
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|
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dif_tiles() |
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{ |
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# dif_data_loc dd1 dd2 file |
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# for all tiles ==> do diff dd1/file dd2/file' |
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dd1=$1 ; dd2=$2 ; zz=$3 |
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chkmeta='Y' |
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listY=`(cd $dd1 ; ls $zz.*.data | sed "s/$zz\.//" | sed "s/\.data//")` |
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echo '--> file='$zz', listY='$listY |
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for yy in $listY |
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do |
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echo diff $dd1/$zz.$yy.data $dd2 |
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diff $dd1/$zz.$yy.data $dd2 |
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out=$? |
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if test $out != 0 |
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then echo 'Diff outp=' $out ' ==> stop' |
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exit ; fi |
| 36 |
if test $chkmeta = 'Y' |
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then |
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echo diff $dd1/$zz.$yy.meta $dd2 |
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diff $dd1/$zz.$yy.meta $dd2 |
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out=$? |
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if test $out != 0 |
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then echo 'Diff outp=' $out ' ==> stop' |
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exit ; fi |
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fi |
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done |
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} |
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|
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if test -f input_ocn/data.tst |
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then |
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noc0=`sed -n 's/nIter0=//p' input_ocn/data.tst | sed 's/,//g' | sed 's/ //g'` |
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Dbl=`sed -n 's/nTimeSteps=//p' input_ocn/data.tst | sed 's/,//g'` |
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NiOc=`expr $Dbl / 2` |
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Nit=$NiOc |
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else |
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echo " file: 'input_ocn/data.tst' not found" |
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NiOc=0 ; Nit=2 |
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fi |
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if test -f input_atm/data.tst |
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then |
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nat0=`sed -n 's/nIter0=//p' input_atm/data.tst | sed 's/,//g' | sed 's/ //g'` |
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Dbl=`sed -n 's/nTimeSteps=//p' input_atm/data.tst | sed 's/,//g'` |
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NiAt=`expr $Dbl / 2` |
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else |
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echo " file: 'input_atm/data.tst' not found" |
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NiAt=0 |
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fi |
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|
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#- parse options: |
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CMD='run_cpl_test' |
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MTH= |
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argList=$* |
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for xx in $argList |
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do |
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if test $xx = '-mth' ; then MTH=$xx ; shift ; continue ; fi |
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if test -x ${CMD}_$xx ; then CMD="${CMD}_$xx" ; shift ; continue ; fi |
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done |
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|
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if [ $# -ne 1 ] |
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then |
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echo "Usage: `basename $0` [opt] flag" |
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echo " Check restart of coupled set-up: compare 1 run of 2 x $Nit it long" |
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echo " with 2 consecutive runs of $Nit it long each" |
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echo "opt = -mth : run script '$CMD' with option '-mth'" |
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echo "opt = sufx : run script 'run_cpl_test_{sufx}'" |
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echo " where: flag = 0 -> prepare for 1rst run" |
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echo " flag = r1 -> do 1rst run and step 1" |
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echo " flag = 1 -> move res. after 1rst run & prepare for 2nd" |
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echo " flag = r2 -> do 2nd run and step 2" |
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echo " flag = 2 -> move res. after 2nd run & prepare for 3rd" |
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echo " flag = r3 -> do 3rd run and step 3" |
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echo " flag = 3 -> move res. after 3rd run" |
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echo " flag=(r)N+ , N=1,2,3 => do steps (+run) from: (r)N to 3" |
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echo " flag = 4 -> compare Ocean results" |
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echo " flag = 5 -> compare Atmos results" |
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echo " flag = 6 -> diff pickup files" |
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echo " flag = 7 -> clean-up output files" |
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exit |
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fi |
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if test $NiAt = 0 -o $NiOc = 0 |
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then |
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echo " needs 2 data files: 'input_ocn/data.tst' & 'input_atm/data.tst'" |
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echo " (corresponding to 1rst run) to continue" |
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exit |
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fi |
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arg1=$1 |
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xx=`echo $arg1 | sed 's/\+$//'` |
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if test $xx != $arg1 |
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then kUp=`echo $xx | sed 's/^r//'` ; arg1=$xx |
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else kUp=9 ; fi |
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xx=`echo $arg1 | sed 's/^r//'` |
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if test $xx != $arg1 ; then doRun=1 ; arg1=$xx ; else doRun=0 ; fi |
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ksel=$arg1 |
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|
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CMD="./${CMD} $MTH 3" |
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echo " doRun='$doRun' ; ksel='$ksel' ; kUp='$kUp' ; command='$CMD'" |
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|
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#make sure that local dir & ~jmc/bin is in the path: |
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#export PATH=${PATH}:. |
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|
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Nit=$NiOc |
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Dbl=`expr $Nit + $Nit` |
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noc1=`expr $noc0 + $Nit` |
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noc2=`expr $noc0 + $Dbl` |
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noc0c=`printf "%10.10i\n" $noc0` |
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noc1c=`printf "%10.10i\n" $noc1` |
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noc2c=`printf "%10.10i\n" $noc2` |
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echo ' Oce (rank_1):' $noc0 $noc1 $noc2 |
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echo ' ' $noc0c $noc1c $noc2c |
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|
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Nit=$NiAt |
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Dbl=`expr $Nit + $Nit` |
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nat1=`expr $nat0 + $Nit` |
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nat2=`expr $nat0 + $Dbl` |
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nat0c=`printf "%10.10i\n" $nat0` |
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nat1c=`printf "%10.10i\n" $nat1` |
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nat2c=`printf "%10.10i\n" $nat2` |
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echo ' Atm (rank_2):' $nat0 $nat1 $nat2 |
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echo ' ' $nat0c $nat1c $nat2c |
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|
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listOc="pickup" |
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listAt="pickup pickup_cpl pickup_ic pickup_land" |
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|
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#- dir where to put the results : |
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dir1=res_2it |
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dir2=res_1iA |
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dir3=res_1iB |
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|
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#-- after a run, rename pickup file to restart |
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if test $ksel = 0 |
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then |
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echo ' ' |
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cd rank_1 |
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for xx in $listOc |
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do rnp_loc $xx.ckptA $xx.$noc0c |
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done |
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cd ../rank_2 |
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for xx in $listAt |
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do rnp_loc $xx.ckptA $xx.$nat0c |
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done |
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cd .. |
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#-- prepare for running Dbl |
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echo '=> prepare for running Dbl:' |
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Dbl=`expr $NiOc + $NiOc` |
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sed "1 s/[0-9]*/$Dbl/" input_cpl/data > rank_0/data |
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cp -p input_ocn/data.tst rank_1/data |
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cp -p input_atm/data.tst rank_2/data |
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echo 'rank_0/data:' `head -1 rank_0/data` |
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egrep 'nIter0|nTimeSteps' rank_?/data |
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fi |
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|
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#-- run & post-process Dbl: |
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if [ $ksel -eq 1 -o $kUp -le 1 ] |
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then |
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echo ' ' |
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#-- run coupled test (Dbl): |
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if [ $doRun -eq 1 -o $kUp -lt 1 ] |
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then |
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echo "=> run (Dbl): $CMD" |
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$CMD |
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fi |
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#-- after running Dbl: |
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rm -rf $dir1 |
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mkdir $dir1 |
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echo '=> move STDOUT to' $dir1 |
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mv rank_1/STDOUT* $dir1/ocnSTDOUT.2it |
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mv rank_2/STDOUT* $dir1/atmSTDOUT.2it |
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|
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mkdir $dir1/ocn |
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cd rank_1 |
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for xx in $listOc |
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do |
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rnp_loc $xx.ckptA $xx.$noc2c |
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done |
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echo 'move pickups to' $dir1/ocn |
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mv pickup*.$noc2c.* ../$dir1/ocn |
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cd .. |
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|
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mkdir $dir1/atm |
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cd rank_2 |
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for xx in $listAt |
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do |
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rnp_loc $xx.ckptA $xx.$nat2c |
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done |
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echo 'move pickups to' $dir1/atm |
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mv pickup*.$nat2c.* ../$dir1/atm |
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cd .. |
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|
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#-- prepare for running 1iA |
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echo '=> prepare for running 1iA:' |
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Nit=$NiOc |
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Dbl=`expr $Nit + $Nit` |
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sed "1 s/[0-9]*/$Nit/" input_cpl/data > rank_0/data |
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sed "s/^ nTimeSteps=$Dbl/ nTimeSteps=$Nit/g" input_ocn/data.tst > rank_1/data |
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Nit=$NiAt |
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Dbl=`expr $Nit + $Nit` |
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sed "s/^ nTimeSteps=$Dbl/ nTimeSteps=$Nit/g" input_atm/data.tst > rank_2/data |
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echo 'rank_0/data:' `head -1 rank_0/data` |
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egrep 'nIter0|nTimeSteps' rank_?/data |
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fi |
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|
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#-- run & post-process 1iA: |
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if [ $ksel -eq 2 -o $kUp -le 2 ] |
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then |
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echo ' ' |
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#-- run coupled test (1iA): |
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if [ $doRun -eq 1 -o $kUp -lt 2 ] |
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then |
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echo "=> run (1iA): $CMD" |
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$CMD |
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fi |
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#-- after running 1iA |
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rm -rf $dir2 |
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mkdir $dir2 |
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echo '=> move STDOUT to' $dir2 |
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mv rank_1/STDOUT* $dir2/ocnSTDOUT.1iA |
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mv rank_2/STDOUT* $dir2/atmSTDOUT.1iA |
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|
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mkdir $dir2/ocn |
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cd rank_1 |
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for xx in $listOc |
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do |
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rnp_loc $xx.ckptA $xx.$noc1c |
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done |
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echo 'move pickups to' $dir2/ocn |
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mv pickup*.$noc1c.* ../$dir2/ocn |
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cd .. |
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|
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mkdir $dir2/atm |
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cd rank_2 |
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for xx in $listAt |
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do |
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rnp_loc $xx.ckptA $xx.$nat1c |
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done |
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echo 'move pickups to' $dir2/atm |
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mv pickup*.$nat1c.* ../$dir2/atm |
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cd .. |
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|
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#-- prepare for running 1iB |
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echo '=> prepare for running 1iB:' |
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cd rank_1 |
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sed "s/^ nIter0=$noc0/ nIter0=$noc1/g" data > data.tmp |
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mv -f data.tmp data |
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ln -s ../$dir2/ocn/* . |
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cd ../rank_2 |
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sed "s/^ nIter0=$nat0/ nIter0=$nat1/g" data > data.tmp |
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mv -f data.tmp data |
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ln -s ../$dir2/atm/* . |
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cd .. |
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echo 'rank_0/data:' `head -1 rank_0/data` |
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egrep 'nIter0|nTimeSteps' rank_?/data |
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fi |
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|
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#-- run & post-process 1iB: |
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if [ $ksel -eq 3 -o $kUp -le 3 ] |
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then |
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echo ' ' |
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#-- run coupled test (1iB): |
| 278 |
if [ $doRun -eq 1 -o $kUp -lt 3 ] |
| 279 |
then |
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echo "=> run (1iB): $CMD" |
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$CMD |
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fi |
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#-- after running 1iB |
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rm -rf $dir3 |
| 285 |
mkdir $dir3 |
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echo '=> move STDOUT to' $dir3 |
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mv rank_1/STDOUT* $dir3/ocnSTDOUT.1iB |
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mv rank_2/STDOUT* $dir3/atmSTDOUT.1iB |
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|
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mkdir $dir3/ocn |
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cd rank_1 |
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for xx in $listOc |
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do rnp_loc $xx.ckptA $xx.$noc2c |
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done |
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echo 'move pickups to' $dir3/ocn |
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mv pickup*.$noc2c.* ../$dir3/ocn |
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rm -f pickup*.$noc1c.* |
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cd .. |
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|
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mkdir $dir3/atm |
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cd rank_2 |
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for xx in $listAt |
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do rnp_loc $xx.ckptA $xx.$nat2c |
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done |
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echo 'move pickups to' $dir3/atm |
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mv pickup*.$nat2c.* ../$dir3/atm |
| 307 |
rm -f pickup*.$nat1c.* |
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cd .. |
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echo '=> restore std data files' |
| 310 |
cp -p input_cpl/data rank_0 |
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cp -p input_ocn/data rank_1 |
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cp -p input_atm/data rank_2 |
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fi |
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|
| 315 |
#-- compare output: |
| 316 |
if test $ksel = 4 |
| 317 |
then |
| 318 |
rm -f ocn.txt |
| 319 |
echo ' run 2it: ---------- ' > tmp1.txt |
| 320 |
grep "cg2d_init_res" $dir1/ocnSTDOUT.2it \ |
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| sed 's/.* cg2d_init_res =//' >> tmp1.txt |
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Nit=`expr $NiOc + 2` |
| 323 |
sed "$Nit i \ ... 2it continue ..." tmp1.txt > tmp2.txt |
| 324 |
rm -f tmp1.txt |
| 325 |
echo ' run 1iA: ---------- ' > tmp1.txt |
| 326 |
grep "cg2d_init_res" $dir2/ocnSTDOUT.1iA \ |
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| sed 's/.* cg2d_init_res =//' >> tmp1.txt |
| 328 |
echo ' run 1iB: ---------- ' >> tmp1.txt |
| 329 |
grep "cg2d_init_res" $dir3/ocnSTDOUT.1iB \ |
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| sed 's/.* cg2d_init_res =//' >> tmp1.txt |
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nl tmp1.txt > tmp1.ttt |
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nl tmp2.txt > tmp2.ttt |
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join tmp1.ttt tmp2.ttt | sed 's/[0-9]*//' > ocn.txt |
| 334 |
rm -f tmp1.ttt tmp2.ttt tmp1.txt tmp2.txt |
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echo ' ' ; echo '-- compare cg2d_init_res (Ocean):' |
| 336 |
cat ocn.txt |
| 337 |
exit |
| 338 |
fi |
| 339 |
|
| 340 |
if test $ksel = 5 |
| 341 |
then |
| 342 |
rm -f atm.txt |
| 343 |
echo ' run 2it: ---------- ' > tmp1.txt |
| 344 |
grep "cg2d_init_res" $dir1/atmSTDOUT.2it \ |
| 345 |
| sed 's/.* cg2d_init_res =//' >> tmp1.txt |
| 346 |
Nit=`expr $NiAt + 2` |
| 347 |
sed "$Nit i \ ... 2it continue ..." tmp1.txt > tmp2.txt |
| 348 |
rm -f tmp1.txt |
| 349 |
echo ' run 1iA: ---------- ' > tmp1.txt |
| 350 |
grep "cg2d_init_res" $dir2/atmSTDOUT.1iA \ |
| 351 |
| sed 's/.* cg2d_init_res =//' >> tmp1.txt |
| 352 |
echo ' run 1iB: ---------- ' >> tmp1.txt |
| 353 |
grep "cg2d_init_res" $dir3/atmSTDOUT.1iB \ |
| 354 |
| sed 's/.* cg2d_init_res =//' >> tmp1.txt |
| 355 |
nl tmp1.txt > tmp1.ttt |
| 356 |
nl tmp2.txt > tmp2.ttt |
| 357 |
join tmp1.ttt tmp2.ttt | sed 's/[0-9]*//' > atm.txt |
| 358 |
rm -f tmp1.ttt tmp2.ttt tmp1.txt tmp2.txt |
| 359 |
echo ' ' ; echo '-- compare cg2d_init_res (Atmos):' |
| 360 |
cat atm.txt |
| 361 |
exit |
| 362 |
fi |
| 363 |
|
| 364 |
#- compare pickup file: |
| 365 |
if test $ksel = 6 |
| 366 |
then |
| 367 |
echo ' ' ; echo '=== compare Ocn pickups: ==============' |
| 368 |
for xx in $listOc |
| 369 |
do |
| 370 |
dif_tiles $dir1/ocn $dir3/ocn $xx.$noc2c |
| 371 |
done |
| 372 |
echo ' ' ; echo '=== compare Atm pickups: ==============' |
| 373 |
for xx in $listAt |
| 374 |
do |
| 375 |
dif_tiles $dir1/atm $dir3/atm $xx.$nat2c |
| 376 |
done |
| 377 |
exit |
| 378 |
fi |
| 379 |
|
| 380 |
#- clean-up and reset: |
| 381 |
if test $ksel = 7 |
| 382 |
then |
| 383 |
echo "== clean-up and reset :" |
| 384 |
# echo '--> remove pickup*.'$noc0c'* sym-links:' |
| 385 |
# cd rank_1 |
| 386 |
# listS=`find . ! -name . -prune -type l -name 'pickup*.'${noc0c}'*'` |
| 387 |
# if [ $prt -ge 2 ] ; then echo ' in rank_1: rm' $listS ; fi |
| 388 |
# rm -f $listS |
| 389 |
# echo '--> remove pickup*.'$nat0c'* sym-links:' |
| 390 |
# cd ../rank_2 |
| 391 |
# listS=`find . ! -name . -prune -type l -name 'pickup*.'${nat0c}'*'` |
| 392 |
# if [ $prt -ge 2 ] ; then echo ' in rank_2: rm' $listS ; fi |
| 393 |
# rm -f $listS |
| 394 |
# cd .. |
| 395 |
echo '--> remove output dir and output files:' |
| 396 |
echo ' rm -rf' $dir1 $dir2 $dir3 |
| 397 |
rm -rf $dir1 $dir2 $dir3 |
| 398 |
rm -f atm.txt ocn.txt |
| 399 |
#- move back files from temp_tst dir: |
| 400 |
#if test -d $tmpDir ; then |
| 401 |
# echo "--> move back files from 'temp_tst' dir." |
| 402 |
# cd $tmpDir ; mv -f * .. ; cd .. |
| 403 |
# rmdir $tmpDir |
| 404 |
#fi |
| 405 |
exit |
| 406 |
fi |
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