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revision 1.3 by jmc, Wed Nov 7 01:40:47 2007 UTC revision 1.14 by jmc, Thu Dec 24 21:29:23 2015 UTC
# Line 1  Line 1 
1  #!/bin/sh  #! /usr/bin/env bash
2    
3  # $Header$  # $Header$
4  # $Name$  # $Name$
# Line 7  rnp_loc() Line 7  rnp_loc()
7  {  {
8  #   rnp_loc arg_1 arg_2  #   rnp_loc arg_1 arg_2
9  #   rename files with prefix = 'arg_1' to files with prefix = 'arg_2'  #   rename files with prefix = 'arg_1' to files with prefix = 'arg_2'
10      echo 'rnp_loc:' $1 $2      if [ $prt -ge 1 ] ; then echo '  rnp_loc:' $1 $2 ; fi
11  #   rnp -s $1 $2  #   rnp -s $1 $2
12      yy=$1 ; zz=$2      listY=`ls -1 $1*`
13      listF=`ls -1 ${yy}*`      for yy in $listY
     for xx in $listF  
14      do      do
15        ff=`echo $xx | sed "s/^$yy/$zz/"`        zz=`echo $yy | sed "s/^$1/$2/"`
16        mv $xx $ff        if [ $prt -ge 2 ] ; then echo '   mv' $yy $zz ; fi
17          if test $action = 1 ; then    mv $yy $zz ; fi
18      done      done
19  }  }
20    
21  dif_tiles()  dif_tiles()
22  {  {
23  #   dif_data_loc dir1 dir2 file  #   dif_data_loc dd1 dd2 file
24  #   for all tiles  ==> do diff dir1/file dir2/file'  #   for all tiles  ==> do diff dd1/file dd2/file'
25      dir1=$1 ; dir2=$2 ; zz=$3      dd1=$1 ; dd2=$2 ; zz=$3
26      chkmeta='Y'      chkmeta='N'
27      listX=`(cd $dir1 ; ls $zz.*.data | sed "s/$zz\.//" | sed "s/\.data//")`      listY=`(cd $dd1 ; ls $zz.data | sed "s/\.data//") 2> /dev/null`
28      echo '--> file=' $zz ', listX=' $listX      if test "x$listY" = "x$zz" ; then
29      for xx in $listX        echo '--> file='$zz' (global)'
30          echo diff $dd1/$zz.data $dd2
31          diff $dd1/$zz.data $dd2
32          out=$?
33          if test $out != 0
34          then echo 'Diff outp=' $out ' ==> stop'
35           exit ; fi
36          if test $chkmeta = 'Y' ; then
37           echo diff $dd1/$zz.meta $dd2
38           diff $dd1/$zz.meta $dd2
39           out=$?
40           if test $out != 0 ; then echo 'Diff outp=' $out ' ==> stop' ; exit ; fi
41          fi
42          return
43        fi
44        listY=`(cd $dd1 ; ls $zz.*.data | sed "s/$zz\.//" | sed "s/\.data//")`
45        echo '--> file='$zz', listY='$listY
46        for yy in $listY
47      do      do
48        echo diff $dir1/$zz.$xx.data $dir2        echo diff $dd1/$zz.$yy.data $dd2
49        diff $dir1/$zz.$xx.data $dir2        diff $dd1/$zz.$yy.data $dd2
50        out=$?        out=$?
51        if test $out != 0        if test $out != 0
52        then echo 'Diff outp=' $out ' ==> stop'        then echo 'Diff outp=' $out ' ==> stop'
53         exit ; fi         exit ; fi
54        if test $chkmeta = 'Y'        if test $chkmeta = 'Y' ; then
55        then         echo diff $dd1/$zz.$yy.meta $dd2
56         echo diff $dir1/$zz.$xx.meta $dir3         diff $dd1/$zz.$yy.meta $dd2
        diff $dir1/$zz.$xx.meta $dir3  
57         out=$?         out=$?
58         if test $out != 0         if test $out != 0 ; then echo 'Diff outp=' $out ' ==> stop' ; exit ; fi
        then echo 'Diff outp=' $out ' ==> stop'  
         exit ; fi  
59        fi        fi
60      done      done
61  }  }
62    
63  if test -f input_ocn/data.tst  move_outp()
64  then  {
65   noc0=`sed -n 's/nIter0=//p' input_ocn/data.tst | sed 's/,//g' | sed 's/ //g'`  #   move_outp arg_1
66   Dbl=`sed -n 's/nTimeSteps=//p' input_ocn/data.tst | sed 's/,//g'`  #   move mitgcm output files to directory 'arg_1'
67   NiOc=`expr $Dbl / 2`      if [ $prt -ge 1 ] ; then echo ' move_outp:' $1 ; fi
68   Nit=$NiOc      mv *.data *.meta $1
69  else      listF=`ls -1 *.txt STD???.0000 *.log 2> /dev/null`
70   echo " file: 'input_ocn/data.tst' not found"      if test "x$listF" != x ; then mv $listF $1 ; fi
71   NiOc=0 ; Nit=2      #- move back sym link:
72  fi      listL=`find $1 -type l`
73  if test -f input_atm/data.tst      ttd=`echo $listL | wc -w`
74  then      #echo "ttd=$ttd"
75   nat0=`sed -n 's/nIter0=//p' input_atm/data.tst | sed 's/,//g' | sed 's/ //g'`      if test $ttd != 0 ; then
76   Dbl=`sed -n 's/nTimeSteps=//p' input_atm/data.tst | sed 's/,//g'`        #echo "listL='$listL'"
77   NiAt=`expr $Dbl / 2`        shortList=`ls $listL | sed "s|$1/||"`
78  else        if [ $prt -ge 2 ] ; then echo "  mv back:" $shortList ; fi
79   echo " file: 'input_atm/data.tst' not found"        mv $listL .
80   NiAt=0      fi
81  fi  }
82    
83  case $# in  #----------------------------------------------------------------------
84    1) ;;  
85     *) echo "Usage: `basename $0` flag"  prepare_first()
86        echo " Check restart of coupled set-up: compare 1 run of 2 x $Nit it long"  {
87        echo "                       with 2 consecutive runs of $Nit it long each"  #   prepare_first arg_1 arg_2 arg_3
88        echo " where: flag = 0 -> prepare for 1rst run"  #-----------------------------------------------------------
89        echo "        flag = 1 -> move res. after 1rst run & prepare for 2nd"  #   from a previous run in "arg_2" dir: collect info for
90        echo "        flag = 2 -> move res. after 2nd  run & prepare for 3rd"  #     test: arg_1 (iters) + arg_1 (iter) = 2x arg_1 (iter) ;
91        echo "        flag = 3 -> move res. after 3rd  run"  #     move output files from "arg_2" dir to 'arg_3" dir ;
92        echo "        flag = 4 -> compare Ocean results"  #     create "data.tst" in arg_2 dir ;
93        echo "        flag = 5 -> compare Atmos results"  #     and prepare pickup and params file for 1rst run.
94        echo "        flag = 6 -> diff pickup files"  #-----------------------------------------------------------
95        exit ;;  
96  esac    nIt=$1 ; dFr=$2 ; dTo=$3
97  if test $NiAt = 0 -o $NiOc = 0    if [ $prt -ge 1 ] ; then
98  then        echo " run 'prepare_first' : nIt=$nIt, from '$dFr' to '$dTo'" ; fi
99      echo " needs 2 data files: 'input_ocn/data.tst' & 'input_atm/data.tst'"    outpRun="$dFr/STDOUT.0000"
100      echo "  (corresponding to 1rst run) to continue"  #- last pickup written (from previous run):
101    exit    if test -r $outpRun
102      then
103    #   grep ' %CHECKPOINT ' $outpRun | tail -1
104        lastPick=`grep ' %CHECKPOINT ' $outpRun | sed 's/^.*%CHECKPOINT //' | tail -1`
105        if test "x$lastPick" = x
106        then
107         echo "no pickup information written in '$outpRun' from previous run"
108         exit 8
109        else
110         iter=`echo $lastPick | awk '{print $1}'`
111         sufx=`echo $lastPick | awk '{print $2}'`
112         echo " from '$outpRun' : lastPick='$lastPick' > iter='$iter', sufx='$sufx'"
113        fi
114      else
115        echo "no standard output file '$outpRun' from previous run"
116        exit 7
117      fi
118    #- create parameter file "data.tst":
119      echo " preparing parameter file 'data.tst' :"
120      pFile="$dFr/data.tst"
121      if test -h $pFile ; then rm -f $pFile ; fi
122      cp -p -f $dFr/data $pFile
123      listOut='startTime endTime nIter0 nTimeSteps nEndIter chkPtFreq pChkPtFreq'
124      listOut=$listOut' pickupSuff usePickupBeforeC54 mdsioLocalDir pickupStrictlyMatch'
125    #- comment out (in data.tst) all parameters from list: 'listOut'
126      for yy in $listOut
127      do
128        if [ $prt -ge 2 ] ; then echo -n '  commenting out:' $yy ; fi
129        nn=`grep -i -c "^ *$yy *=" $pFile`
130        if [ $nn -ge 1 ]
131        then
132          listN=`grep -i -n "^ *$yy *=" $pFile | sed 's/:.*$//'`
133          if [ $prt -ge 2 ] ; then echo " : found on line: $listN" ; fi
134          for ll in $listN
135          do
136            sed "$ll s/^./#&/" $pFile > data.tmp_$$
137           #diff data.tmp_$$ $pFile
138            mv -f data.tmp_$$ $pFile
139          done
140        else if [ $prt -ge 2 ] ; then echo ' : not found' ; fi
141        fi
142      done
143      if [ $prt -ge 2 ] ; then echo ' ' ; fi
144    # add nIter0 & nTimeSteps in namelist "PARM03":
145      Dbl=`expr $nIt \* 2`
146      sed "/^ *\&PARM03/a \ nTimeSteps=$Dbl," $pFile > data.tmp_$$
147      mv -f data.tmp_$$ $pFile
148      sed "/^ *\&PARM03/a \ nIter0=$iter," $pFile > data.tmp_$$
149      mv -f data.tmp_$$ $pFile
150      echo "preparing file '$pFile' : done"
151      if  [ $prt -ge 1 ] ; then
152        echo " diff $pFile $dFr/data" ; diff $pFile $dFr/data ; echo ' ' ;
153      fi
154    #---- clean up current dir: move output to temp_tst dir:
155    if test $action = 1 ; then
156      ( cd $dFr ; move_outp ../$dTo )
157      listF=`ls -1 $dFr/STD???.0[0-9][0-9][0-9] 2> /dev/null`
158      if test "x$listF" != x ; then mv $listF $dTo ; fi
159    #- move main parameter file "data":
160      mv $dFr/data $dTo
161    #- do not deal with MNC pickup at all:
162      cp -p -f $dFr/data.pkg data.tmp_$$
163      mv -f $dFr/data.pkg $dTo
164      mv -f data.tmp_$$ $dFr/data.pkg
165      yy='useMNC'
166      if [ $prt -ge 2 ] ; then echo -n "  commenting out: $yy in data.pkg" ; fi
167      nn=`grep -i -c "^ *$yy *=" $dFr/data.pkg`
168      if [ $nn -ge 1 ] ; then
169        listN=`grep -i -n "^ *$yy *=" $dFr/data.pkg | sed 's/:.*$//'`
170        if [ $prt -ge 2 ] ; then echo " : found on line: $listN" ; fi
171        for ll in $listN
172        do
173          sed "$ll s/^./#&/" $dFr/data.pkg > data.tmp_$$
174          if  [ $prt -ge 1 ] ; then echo ' changes in data.pkg'
175            diff data.tmp_$$ $dFr/data.pkg ; echo ' ' ; fi
176          mv -f data.tmp_$$ $dFr/data.pkg
177        done
178      else if [ $prt -ge 2 ] ; then echo ' : not found' ; echo ' ' ; fi
179      fi
180    #-- link back pickup files
181      listS=`ls $dTo/pickup*.${sufx}.* 2> /dev/null | head -1`
182      if test "x$listS" != x ; then
183        if [ $prt -ge 1 ] ; then echo ' link back:' ../$dTo'/pickup*.'${sufx}'*' ; fi
184        ( cd $dFr ; ln -s ../$dTo/pickup*.${sufx}* . )
185      fi
186    #- rename pickup (if needed)
187      nIt0c=`printf "%10.10i\n" $iter`
188      if test $sufx = $nIt0c
189      then
190        echo "no need to change pickup sufix"
191      else
192        listP=`(cd $dFr ; ls pickup*.${sufx}* 2> /dev/null | sed 's/\..*//g' | uniq )`
193        if test "x$listP" = x
194        then echo ' rename' $sufx  '->' $nIt0c ': no file to rename'
195        else
196         if [ $prt -ge 1 ] ; then echo ' rename' $sufx  '->' $nIt0c 'for all:' $listP ; fi
197         ( cd $dFr ; for yy in $listP
198           do rnp_loc $yy.${sufx} $yy.$nIt0c
199           done )
200        fi
201      fi
202    fi
203    #----------------------------------------------------------------------
204    }
205    
206    #===============================================================================
207    #-- sequential part start here
208    #===============================================================================
209    
210    #- default:
211    Nit=2
212    prt=1    # 1 = print some informations ; 2 = print more informations
213    action=1
214    tmpDir='temp_tst'
215    
216    pickRef='pickup'
217    # offLine=`grep -i -c '^ *useOffLine *= *\.TRUE\.' data.pkg`
218    # if [ $offLine -ge 1 ] ; then pickRef='pickup_ptracers' ; fi
219    
220    #- dir where to put the results :
221    dir1=res_2it
222    dir2=res_1iA
223    dir3=res_1iB
224    
225    #- get number of procs from file "pr_group":
226    if test -f pr_group ; then
227     Npr=`cat pr_group | wc -l`
228     NpOc=`grep -c '\/build_ocn\/mitgcmuv' pr_group`
229    else echo " file: 'pr_group' not found"
230     Npr=0
231  fi  fi
232  ksel=$1  
233    #- parse options:
234    CMD='run_cpl_test'
235    MTH=
236    argList=$*
237    for xx in $argList
238    do
239     if test $xx = '-mth' ; then MTH=$xx ; shift ; continue ; fi
240     if test -x ${CMD}.$xx ; then CMD="${CMD}.$xx" ; shift ; continue ; fi
241    done
242    
243    if [ $# -ne 1 ] ; then
244       echo "Usage: `basename $0` [opt] flag"
245       echo " Check restart of coupled set-up: compare 1 run of 2 x $Nit it long"
246       echo "                       with 2 consecutive runs of $Nit it long each"
247       echo "opt = -mth : run script '$CMD' with option '-mth'"
248       echo "opt = sufx : run script 'run_cpl_test.{sufx}'"
249       echo " where: flag = 0  -> prepare for 1rst run"
250       echo "        flag = r1 -> do 1rst run and step 1"
251       echo "        flag =  1 -> move res. after 1rst run & prepare for 2nd"
252       echo "        flag = r2 -> do 2nd  run and step 2"
253       echo "        flag =  2 -> move res. after 2nd  run & prepare for 3rd"
254       echo "        flag = r3 -> do 3rd  run and step 3"
255       echo "        flag =  3 -> move res. after 3rd  run"
256       echo "        flag=(r)N+ , N=1,2,3 => do steps (+run) from: (r)N to 3"
257       echo "        flag = 4  -> compare Ocean results"
258       echo "        flag = 5  -> compare Atmos results"
259       echo "        flag = 6  -> diff pickup files"
260       echo "        flag = 7  -> clean-up output files"
261       exit
262    fi
263    arg1=$1
264    xx=`echo $arg1 | sed 's/\+$//'`
265    if test $xx != $arg1
266    then kUp=`echo $xx | sed 's/^r//'` ; arg1=$xx
267    else kUp=9 ; fi
268    xx=`echo $arg1 | sed 's/^r//'`
269    if test $xx != $arg1 ; then doRun=1 ; arg1=$xx ; else doRun=0 ; fi
270    ksel=$arg1
271    
272    CMD="./${CMD} $MTH 3"
273    echo " doRun='$doRun' ; ksel='$ksel' ; kUp='$kUp' ; command='$CMD'"
274    
275    #- set dir of Master-Proc for 3 components (coupler == rank_0):
276    if test $Npr = 0 ; then
277        echo " needs file: 'pr_group' to continue" ; exit
278    fi
279    rnkO=1 ; rnkA=`expr $rnkO + $NpOc`
280    
281  #make sure that local dir & ~jmc/bin is in the path:  #make sure that local dir & ~jmc/bin is in the path:
282  #export PATH=${PATH}:.  #export PATH=${PATH}:.
283    
284  Nit=$NiOc  #----------------------------------------------------------------------
285  Dbl=`expr $Nit + $Nit`  
286  noc1=`expr $noc0 + $Nit`  if test $ksel = 0 ; then
287    #-- from STDOUT of previous run, get Nb of iters for each component,
288      yy='(PID.TID 0000.0001) nTimeSteps = '
289      outpRun="rank_$rnkO/STDOUT.0000"
290      nTsO=`grep -A1 "$yy" $outpRun | tail -1 | sed 's/(PID.TID 0000.0001) *//'`
291      outpRun="rank_$rnkA/STDOUT.0000"
292      nTsA=`grep -A1 "$yy" $outpRun | tail -1 | sed 's/(PID.TID 0000.0001) *//'`
293    #-  then calculate the ratio and set Nb of time-step for Atmos comp.
294      RatioTs=`expr $nTsA / $nTsO`
295      if [ $prt -ge 1 ] ; then echo " nTsA= $nTsA , nTsO= $nTsO , Ratio= $RatioTs"; fi
296      NiOc=$Nit ;
297      NiAt=`expr $NiOc \* $RatioTs`
298    #---- clean up current dir: rename pickup files and move output to temp_tst dir:
299     /bin/rm -rf $tmpDir.0 $tmpDir.1 $tmpDir.2
300     mkdir $tmpDir.0 $tmpDir.1 $tmpDir.2
301     mv std_outp rank_0/*.clog $tmpDir.0
302     mv rank_$rnkO/*.0001.clog $tmpDir.0
303     mv rank_$rnkA/*.0001.clog $tmpDir.0
304     echo ' '
305     echo "=> prepare OCN dir:"
306     prepare_first $NiOc rank_$rnkO $tmpDir.1
307     echo "=> prepare ATM dir:"
308     prepare_first $NiAt rank_$rnkA $tmpDir.2
309    #-- prepare for running Dbl
310     echo '=> prepare for running Dbl:'
311     Dbl=`expr $NiOc + $NiOc`
312     cp -p rank_$rnkO/data.tst rank_$rnkO/data
313     cp -p rank_$rnkA/data.tst rank_$rnkA/data
314     egrep 'nIter0|nTimeSteps' rank_$rnkO/data rank_$rnkA/data
315    fi
316    
317    #----------------------------------------------------------------------
318    
319    #- extract length of runs & starting iter number from file "data.tst"
320    #  Nit = Nb of iter of 2nd & 3rd run (1rst one is 2 x Nit iter long)
321    pFile="rank_$rnkO/data.tst"
322    if test -f $pFile ; then
323      noc0=`sed -n 's/^ nIter0=//p' $pFile | sed 's/,//g' | sed 's/ //g'`
324      Dbl=`sed -n 's/^ nTimeSteps=//p' $pFile | sed 's/,//g'`
325      NiOc=`expr $Dbl / 2`
326      Nit=$NiOc
327    else echo " file: '$pFile' not found"
328      NiOc=0 ; Nit=2
329    fi
330    pFile="rank_$rnkA/data.tst"
331    if test -f $pFile ; then
332      nat0=`sed -n 's/^ nIter0=//p' $pFile | sed 's/,//g' | sed 's/ //g'`
333      Dbl=`sed -n 's/^ nTimeSteps=//p' $pFile | sed 's/,//g'`
334      NiAt=`expr $Dbl / 2`
335    else echo " file: '$pFile' not found"
336      NiAt=0
337    fi
338    if test $NiAt = 0 -o $NiOc = 0 ; then
339        echo " needs 2 data files: 'rank_$rnkO/data.tst' & 'rank_$rnkA/data.tst'"
340        echo "  (corresponding to 1rst run) to continue"
341      exit
342    fi
343    
344    nit=$NiOc
345    Dbl=`expr $nit + $nit`
346    noc1=`expr $noc0 + $nit`
347  noc2=`expr $noc0 + $Dbl`  noc2=`expr $noc0 + $Dbl`
348  noc0c=`printf "%10.10i\n" $noc0`  noc0c=`printf "%10.10i\n" $noc0`
349  noc1c=`printf "%10.10i\n" $noc1`  noc1c=`printf "%10.10i\n" $noc1`
350  noc2c=`printf "%10.10i\n" $noc2`  noc2c=`printf "%10.10i\n" $noc2`
351  echo 'Oce (rank_1):' $noc0  $noc1  $noc2  echo " Oce (rank_$rnkO):" $noc0  $noc1  $noc2
352  echo $noc0c $noc1c $noc2c  echo "     " $noc0c $noc1c $noc2c
353    
354  Nit=$NiAt  nit=$NiAt
355  Dbl=`expr $Nit + $Nit`  Dbl=`expr $nit + $nit`
356  nat1=`expr $nat0 + $Nit`  nat1=`expr $nat0 + $nit`
357  nat2=`expr $nat0 + $Dbl`  nat2=`expr $nat0 + $Dbl`
358  nat0c=`printf "%10.10i\n" $nat0`  nat0c=`printf "%10.10i\n" $nat0`
359  nat1c=`printf "%10.10i\n" $nat1`  nat1c=`printf "%10.10i\n" $nat1`
360  nat2c=`printf "%10.10i\n" $nat2`  nat2c=`printf "%10.10i\n" $nat2`
361  echo 'Atm (rank_2):' $nat0  $nat1  $nat2  echo " Atm (rank_$rnkA):" $nat0  $nat1  $nat2
362  echo $nat0c $nat1c $nat2c  echo "     " $nat0c $nat1c $nat2c
363    
364  listOc="pickup pickup_cpl"  #----------------------------------------------------------------------
 listAt="pickup pickup_cpl pickup_ic pickup_land"  
365    
366  #- dir where to put the results :  #-- run & post-process Dbl:
367  dir1=res_2it  if [ $ksel -eq 1 -o $kUp -le 1 ] ; then
 dir2=res_1iA  
 dir3=res_1iB  
   
 #-- after a run, rename pickup file to restart  
 if test $ksel = 0  
 then  
368   echo ' '   echo ' '
369   cd rank_1  #-- run coupled test (Dbl):
370   for xx in $listOc   if [ $doRun -eq 1 -o $kUp -lt 1 ] ; then
371   do rnp_loc $xx.ckptA $xx.$noc0c     echo "=> run (Dbl): $CMD"
372   done     $CMD
373   cd ../rank_2   fi
  for xx in $listAt  
  do rnp_loc $xx.ckptA $xx.$nat0c  
  done  
  cd ..  
 #-- prepare for running Dbl  
  echo ' prepare for running Dbl:'  
  Dbl=`expr $NiOc + $NiOc`  
  sed "1 s/[0-9]*/$Dbl/" input_cpl/data > rank_0/data  
  cp -p input_ocn/data.tst rank_1/data  
  cp -p input_atm/data.tst rank_2/data  
  echo 'rank_0/data:' `head -1 rank_0/data`  
  egrep 'nIter0|nTimeSteps' rank_?/data  
 fi  
   
374  #-- after running Dbl:  #-- after running Dbl:
375  if test $ksel = 1  #-  check for pickup
376  then   listOc=`ls -1 rank_$rnkO/$pickRef.ckptA*.data 2> /dev/null`
377     listAt=`ls -1 rank_$rnkA/$pickRef.ckptA*.data 2> /dev/null`
378     if test "x$listOc" = x -o "x$listAt" = x
379     then echo "==> RUN 2 x $NiOc it STOP without writing $pickRef => exit" ; exit 1
380     else echo "==>  END  RUN 2 x $NiOc it" ; fi
381    #-  move output
382   rm -rf $dir1   rm -rf $dir1
383   mkdir $dir1   mkdir $dir1
384   echo ' ' ; echo 'move STDOUT to' $dir1   echo '=> move STDOUT to' $dir1
385   mv rank_1/STDOUT* $dir1/ocnSTDOUT.2it   mv std_outp rank_0/*.0000.clog rank_$rnkO/*.0001.clog rank_$rnkA/*.0001.clog $dir1
386   mv rank_2/STDOUT* $dir1/atmSTDOUT.2it   mv rank_$rnkO/STDOUT.0000 $dir1/ocnSTDOUT.0000
387     mv rank_$rnkA/STDOUT.0000 $dir1/atmSTDOUT.0000
388    
389   mkdir $dir1/ocn   mkdir $dir1/ocn
390   cd rank_1   cd rank_$rnkO
391   for xx in $listOc   listP=`ls pickup*.ckptA* | sed 's/\..*//g' | uniq`
392   do   echo ' listP=' $listP
393    rnp_loc $xx.ckptA $xx.$noc2c   for xx in $listP ; do rnp_loc $xx.ckptA $xx.$noc2c ; done
394   done   echo 'move output to' $dir1/ocn
395   echo 'move pickups to' $dir1/ocn   move_outp  ../$dir1/ocn
  mv pickup*.$noc2c.* ../$dir1/ocn  
396   cd ..   cd ..
397    
398   mkdir $dir1/atm   mkdir $dir1/atm
399   cd rank_2   cd rank_$rnkA
400   for xx in $listAt   listP=`ls pickup*.ckptA* | sed 's/\..*//g' | uniq`
401   do   echo ' listP=' $listP
402    rnp_loc $xx.ckptA $xx.$nat2c   for xx in $listP ; do rnp_loc $xx.ckptA $xx.$nat2c ; done
403   done   echo 'move output to' $dir1/atm
404   echo 'move pickups to' $dir1/atm   move_outp  ../$dir1/atm
  mv pickup*.$nat2c.* ../$dir1/atm  
405   cd ..   cd ..
406    
407  #-- prepare for running 1iA  #-- prepare for running 1iA
408   echo ' prepare for running 1iA:'   echo '=> prepare for running 1iA:'
409   Nit=$NiOc   nit=$NiOc ; Dbl=`expr $nit + $nit`
410   Dbl=`expr $Nit + $Nit`   pFile=rank_$rnkO/data
411   sed "1 s/[0-9]*/$Nit/" input_cpl/data > rank_0/data   sed "s/^ nTimeSteps=$Dbl/ nTimeSteps=$nit/g" $pFile.tst > $pFile
412   sed "s/^ nTimeSteps=$Dbl/ nTimeSteps=$Nit/g" input_ocn/data.tst > rank_1/data   nit=$NiAt ; Dbl=`expr $nit + $nit`
413   Nit=$NiAt   pFile=rank_$rnkA/data
414   Dbl=`expr $Nit + $Nit`   sed "s/^ nTimeSteps=$Dbl/ nTimeSteps=$nit/g" $pFile.tst > $pFile
415   sed "s/^ nTimeSteps=$Dbl/ nTimeSteps=$Nit/g" input_atm/data.tst > rank_2/data   egrep 'nIter0|nTimeSteps' rank_$rnkO/data rank_$rnkA/data
  echo 'rank_0/data:' `head -1 rank_0/data`  
  egrep 'nIter0|nTimeSteps' rank_?/data  
416  fi  fi
417    
418    #-- run & post-process 1iA:
419    if [ $ksel -eq 2 -o $kUp -le 2 ] ; then
420     echo ' '
421    #-- run coupled test (1iA):
422     if [ $doRun -eq 1 -o $kUp -lt 2 ] ; then
423       echo "=> run (1iA): $CMD"
424       $CMD
425     fi
426  #-- after running 1iA  #-- after running 1iA
427  if test $ksel = 2  #-  check for pickup
428  then   listOc=`ls -1 rank_$rnkO/$pickRef.ckptA*.data 2> /dev/null`
429     listAt=`ls -1 rank_$rnkA/$pickRef.ckptA*.data 2> /dev/null`
430     if test "x$listOc" = x -o "x$listAt" = x
431     then echo "==> RUN 1iA STOP without writing $pickRef => exit" ; exit 2
432     else echo "==>  END  RUN 1iA" ; fi
433    #-  move output
434   rm -rf $dir2   rm -rf $dir2
435   mkdir $dir2   mkdir $dir2
436   echo ' ' ; echo 'move STDOUT to' $dir2   echo '=> move STDOUT to' $dir2
437   mv rank_1/STDOUT* $dir2/ocnSTDOUT.1iA   mv std_outp rank_0/*.clog rank_$rnkO/*.clog rank_$rnkA/*.clog $dir2
438   mv rank_2/STDOUT* $dir2/atmSTDOUT.1iA   mv rank_$rnkO/STDOUT.0000 $dir2/ocnSTDOUT.0000
439     mv rank_$rnkA/STDOUT.0000 $dir2/atmSTDOUT.0000
440    
441   mkdir $dir2/ocn   mkdir $dir2/ocn
442   cd rank_1   cd rank_$rnkO
443   for xx in $listOc   listP=`ls pickup*.ckptA* | sed 's/\..*//g' | uniq`
444   do   echo ' listP=' $listP
445    rnp_loc $xx.ckptA $xx.$noc1c   for xx in $listP ; do rnp_loc $xx.ckptA $xx.$noc1c ; done
446   done  # remove pickup*.$noc0c* sym-link:
447   echo 'move pickups to' $dir2/ocn   find . ! -name . -prune -type l -name 'pickup*.'${noc0c}'*' -exec rm {} \;
448   mv pickup*.$noc1c.* ../$dir2/ocn   echo 'move output to' $dir2/ocn
449     move_outp  ../$dir2/ocn
450   cd ..   cd ..
451    
452   mkdir $dir2/atm   mkdir $dir2/atm
453   cd rank_2   cd rank_$rnkA
454   for xx in $listAt   listP=`ls pickup*.ckptA* | sed 's/\..*//g' | uniq`
455   do   echo ' listP=' $listP
456    rnp_loc $xx.ckptA $xx.$nat1c   for xx in $listP ; do rnp_loc $xx.ckptA $xx.$nat1c ; done
457   done  # remove pickup*.$nat0c* sym-link:
458   echo 'move pickups to' $dir2/atm   find . ! -name . -prune -type l -name 'pickup*.'${nat0c}'*' -exec rm {} \;
459   mv pickup*.$nat1c.* ../$dir2/atm   echo 'move output to' $dir2/atm
460     move_outp  ../$dir2/atm
461   cd ..   cd ..
462    
463  #-- prepare for running 1iB  #-- prepare for running 1iB
464   echo ' prepare for running 1iB:'   echo '=> prepare for running 1iB:'
465   cd rank_1   cd rank_$rnkO
466   sed "s/^ nIter0=$noc0/ nIter0=$noc1/g" data > data.tmp   ln -s ../$dir2/ocn/pickup*.$noc1c.* .
467   mv -f data.tmp data   sed "s/^ nIter0=$noc0/ nIter0=$noc1/g" data > data.tmp_$$
468   ln -s ../$dir2/ocn/* .   mv -f data.tmp_$$ data
469   cd ../rank_2   cd ../rank_$rnkA
470   sed "s/^ nIter0=$nat0/ nIter0=$nat1/g" data > data.tmp   ln -s ../$dir2/atm/pickup*.$nat1c.* .
471   mv -f data.tmp data   sed "s/^ nIter0=$nat0/ nIter0=$nat1/g" data > data.tmp_$$
472   ln -s ../$dir2/atm/* .   mv -f data.tmp_$$ data
473   cd ..   cd ..
474   echo 'rank_0/data:' `head -1 rank_0/data`   egrep 'nIter0|nTimeSteps' rank_$rnkO/data rank_$rnkA/data
  egrep 'nIter0|nTimeSteps' rank_?/data  
475  fi  fi
476    
477    #-- run & post-process 1iB:
478    if [ $ksel -eq 3 -o $kUp -le 3 ] ; then
479     echo ' '
480    #-- run coupled test (1iB):
481     if [ $doRun -eq 1 -o $kUp -lt 3 ] ; then
482       echo "=> run (1iB): $CMD"
483       $CMD
484     fi
485  #-- after running 1iB  #-- after running 1iB
486  if test $ksel = 3  #-  check for pickup
487  then   listOc=`ls -1 rank_$rnkO/$pickRef.ckptA*.data 2> /dev/null`
488     listAt=`ls -1 rank_$rnkA/$pickRef.ckptA*.data 2> /dev/null`
489     if test "x$listOc" = x -o "x$listAt" = x
490     then echo "==> RUN 1iB STOP without writing $pickRef => exit" ; exit 3
491     else echo "==>  END  RUN 1iB" ; fi
492    #-  move output
493   rm -rf $dir3   rm -rf $dir3
494   mkdir $dir3   mkdir $dir3
495   echo ' ' ; echo 'move STDOUT to' $dir3   echo '=> move STDOUT to' $dir3
496   mv rank_1/STDOUT* $dir3/ocnSTDOUT.1iB   mv std_outp rank_0/*.clog rank_$rnkO/*.clog rank_$rnkA/*.clog $dir3
497   mv rank_2/STDOUT* $dir3/atmSTDOUT.1iB   mv rank_$rnkO/STDOUT.0000 $dir3/ocnSTDOUT.0000
498     mv rank_$rnkA/STDOUT.0000 $dir3/atmSTDOUT.0000
499    
500   mkdir $dir3/ocn   mkdir $dir3/ocn
501   cd rank_1   cd rank_$rnkO
502   for xx in $listOc   listP=`ls pickup*.ckptA* | sed 's/\..*//g' | uniq`
503   do rnp_loc $xx.ckptA $xx.$noc2c   echo ' listP=' $listP
504   done   for xx in $listP ; do rnp_loc $xx.ckptA $xx.$noc2c ; done
505   echo 'move pickups to' $dir3/ocn  # remove pickup*.$noc1c* sym-link:
506   mv pickup*.$noc2c.* ../$dir3/ocn   find . ! -name . -prune -type l -name 'pickup*.'${noc1c}'*' -exec rm {} \;
507     echo 'move output to' $dir3/ocn
508     move_outp  ../$dir3/ocn
509   cd ..   cd ..
510    
511   mkdir $dir3/atm   mkdir $dir3/atm
512   cd rank_2   cd rank_$rnkA
513   for xx in $listAt   listP=`ls pickup*.ckptA* | sed 's/\..*//g' | uniq`
514   do rnp_loc $xx.ckptA $xx.$nat2c   echo ' listP=' $listP
515   done   for xx in $listP ; do rnp_loc $xx.ckptA $xx.$nat2c ; done
516   echo 'move pickups to' $dir3/atm  # remove pickup*.$nat1c* sym-link:
517   mv pickup*.$nat2c.* ../$dir3/atm   find . ! -name . -prune -type l -name 'pickup*.'${nat1c}'*' -exec rm {} \;
518     echo 'move output to' $dir3/atm
519     move_outp  ../$dir3/atm
520   cd ..   cd ..
521   echo 'restore std data files'  
  cp -p input_cpl/data rank_0  
  cp -p input_ocn/data rank_1  
  cp -p input_atm/data rank_2  
522  fi  fi
523    
524  #-- compare output:  #-- compare output:
525  if test $ksel = 4  if test $ksel = 4 ; then
 then  
526   rm -f ocn.txt   rm -f ocn.txt
527   echo ' run 2it: ---------- ' > tmp1.txt   echo ' run 2it: ---------- ' > tmp1.txt
528   grep "cg2d_init_res" $dir1/ocnSTDOUT.2it \   grep "cg2d_init_res" $dir1/ocnSTDOUT.0000 \
529        | sed 's/.* cg2d_init_res =//' >> tmp1.txt        | sed 's/.* cg2d_init_res =//' >> tmp1.txt
530   Nit=`expr $NiOc + 2`   nit=`expr $NiOc + 2`
531   sed "$Nit i \ ... 2it continue ..." tmp1.txt > tmp2.txt   #echo "NiOc= $NiOc ; nit= $nit"
532     sed "$nit i \ ... 2it continue ..." tmp1.txt > tmp2.txt
533   rm -f tmp1.txt   rm -f tmp1.txt
534   echo ' run 1iA: ---------- ' > tmp1.txt   echo ' run 1iA: ---------- ' > tmp1.txt
535   grep "cg2d_init_res" $dir2/ocnSTDOUT.1iA \   grep "cg2d_init_res" $dir2/ocnSTDOUT.0000 \
536        | sed 's/.* cg2d_init_res =//' >> tmp1.txt        | sed 's/.* cg2d_init_res =//' >> tmp1.txt
537   echo ' run 1iB: ---------- ' >> tmp1.txt   echo ' run 1iB: ---------- ' >> tmp1.txt
538   grep "cg2d_init_res" $dir3/ocnSTDOUT.1iB \   grep "cg2d_init_res" $dir3/ocnSTDOUT.0000 \
539        | sed 's/.* cg2d_init_res =//' >> tmp1.txt        | sed 's/.* cg2d_init_res =//' >> tmp1.txt
540   nl tmp1.txt > tmp1.ttt   nl tmp1.txt > tmp1.ttt
541   nl tmp2.txt > tmp2.ttt   nl tmp2.txt > tmp2.ttt
# Line 285  then Line 546  then
546   exit   exit
547  fi  fi
548    
549  if test $ksel = 5  if test $ksel = 5 ; then
 then  
550   rm -f atm.txt   rm -f atm.txt
551   echo ' run 2it: ---------- ' > tmp1.txt   echo ' run 2it: ---------- ' > tmp1.txt
552   grep "cg2d_init_res" $dir1/atmSTDOUT.2it \   grep "cg2d_init_res" $dir1/atmSTDOUT.0000 \
553        | sed 's/.* cg2d_init_res =//' >> tmp1.txt        | sed 's/.* cg2d_init_res =//' >> tmp1.txt
554   Nit=`expr $NiAt + 2`   nit=`expr $NiAt + 2`
555   sed "$Nit i \ ... 2it continue ..." tmp1.txt > tmp2.txt   sed "$nit i \ ... 2it continue ..." tmp1.txt > tmp2.txt
556   rm -f tmp1.txt   rm -f tmp1.txt
557   echo ' run 1iA: ---------- ' > tmp1.txt   echo ' run 1iA: ---------- ' > tmp1.txt
558   grep "cg2d_init_res" $dir2/atmSTDOUT.1iA \   grep "cg2d_init_res" $dir2/atmSTDOUT.0000 \
559        | sed 's/.* cg2d_init_res =//' >> tmp1.txt        | sed 's/.* cg2d_init_res =//' >> tmp1.txt
560   echo ' run 1iB: ---------- ' >> tmp1.txt   echo ' run 1iB: ---------- ' >> tmp1.txt
561   grep "cg2d_init_res" $dir3/atmSTDOUT.1iB \   grep "cg2d_init_res" $dir3/atmSTDOUT.0000 \
562        | sed 's/.* cg2d_init_res =//' >> tmp1.txt        | sed 's/.* cg2d_init_res =//' >> tmp1.txt
563   nl tmp1.txt > tmp1.ttt   nl tmp1.txt > tmp1.ttt
564   nl tmp2.txt > tmp2.ttt   nl tmp2.txt > tmp2.ttt
# Line 310  then Line 570  then
570  fi  fi
571    
572  #- compare pickup file:  #- compare pickup file:
573  if test $ksel = 6  if test $ksel = 6 ; then
 then  
574   echo ' ' ; echo '=== compare Ocn pickups: =============='   echo ' ' ; echo '=== compare Ocn pickups: =============='
575   for xx in $listOc   listP=`( cd $dir1/ocn ; ls pickup*.$noc2c* | sed 's/\..*//g' | uniq )`
576     for xx in $listP
577   do   do
578     dif_tiles $dir1/ocn $dir3/ocn $xx.$noc2c     dif_tiles $dir1/ocn $dir3/ocn $xx.$noc2c
579   done   done
580   echo ' ' ; echo '=== compare Atm pickups: =============='   echo ' ' ; echo '=== compare Atm pickups: =============='
581   for xx in $listAt   listP=`( cd $dir1/atm ; ls pickup*.$nat2c* | sed 's/\..*//g' | uniq )`
582     for xx in $listP
583   do   do
584     dif_tiles $dir1/atm $dir3/atm $xx.$nat2c     dif_tiles $dir1/atm $dir3/atm $xx.$nat2c
585   done   done
586   exit   exit
587  fi  fi
588    
589    #- clean-up and reset:
590    if test $ksel = 7 ; then
591     echo "== clean-up and reset :"
592     cd rank_$rnkO
593     listS=`find . ! -name . -prune -type l -name 'pickup*.'${noc0c}'*'`
594     if test "x$listS" != x ; then
595       echo '--> remove pickup*.'$noc0c'* sym-links:'
596       if [ $prt -ge 2 ] ; then echo " in rank_$rnkO: rm" $listS ; fi
597       rm -f $listS
598     fi
599     cd ../rank_$rnkA
600     listS=`find . ! -name . -prune -type l -name 'pickup*.'${nat0c}'*'`
601     if test "x$listS" != x ; then
602       echo '--> remove pickup*.'$nat0c'* sym-links:'
603       if [ $prt -ge 2 ] ; then echo " in rank_$rnkA: rm" $listS ; fi
604       rm -f $listS
605     fi
606     cd ..
607    #- move back files from temp_tst dir:
608     echo '=> restore std data files'
609     rm -f rank_{$rnkO,$rnkA}/data
610     rm -f rank_{$rnkO,$rnkA}/data.tst
611     rm -f rank_{$rnkO,$rnkA}/data.pkg
612     mv $tmpDir.0/*Ocean.0001.clog $tmpDir.1/* rank_$rnkO
613     mv $tmpDir.0/*Atmos.0001.clog $tmpDir.2/* rank_$rnkA
614     mv $tmpDir.0/std_outp .
615     mv $tmpDir.0/* rank_0
616     rmdir $tmpDir.0 $tmpDir.1 $tmpDir.2
617    #echo '--> remove output dir and output files:'
618     echo ' rm -rf' $dir1 $dir2 $dir3
619     rm -rf $dir1 $dir2 $dir3
620     rm -f atm.txt ocn.txt
621     exit
622    fi

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