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jmc |
1.8 |
#! /usr/bin/env bash |
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jmc |
1.1 |
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jmc |
1.12 |
# $Header: /u/gcmpack/MITgcm_contrib/jmc_script/tst_2+2_cpl,v 1.11 2012/08/16 23:08:56 jmc Exp $ |
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jmc |
1.2 |
# $Name: $ |
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jmc |
1.3 |
rnp_loc() |
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{ |
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# rnp_loc arg_1 arg_2 |
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# rename files with prefix = 'arg_1' to files with prefix = 'arg_2' |
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jmc |
1.10 |
if [ $prt -ge 1 ] ; then echo ' rnp_loc:' $1 $2 ; fi |
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jmc |
1.3 |
# rnp -s $1 $2 |
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jmc |
1.4 |
listY=`ls -1 $1*` |
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for yy in $listY |
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jmc |
1.3 |
do |
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jmc |
1.4 |
zz=`echo $yy | sed "s/^$1/$2/"` |
| 16 |
jmc |
1.10 |
if [ $prt -ge 2 ] ; then echo ' mv' $yy $zz ; fi |
| 17 |
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if test $action = 1 ; then mv $yy $zz ; fi |
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jmc |
1.3 |
done |
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} |
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dif_tiles() |
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{ |
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jmc |
1.4 |
# dif_data_loc dd1 dd2 file |
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# for all tiles ==> do diff dd1/file dd2/file' |
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dd1=$1 ; dd2=$2 ; zz=$3 |
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jmc |
1.9 |
chkmeta='N' |
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jmc |
1.4 |
listY=`(cd $dd1 ; ls $zz.*.data | sed "s/$zz\.//" | sed "s/\.data//")` |
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echo '--> file='$zz', listY='$listY |
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for yy in $listY |
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jmc |
1.3 |
do |
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jmc |
1.4 |
echo diff $dd1/$zz.$yy.data $dd2 |
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diff $dd1/$zz.$yy.data $dd2 |
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jmc |
1.3 |
out=$? |
| 34 |
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if test $out != 0 |
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then echo 'Diff outp=' $out ' ==> stop' |
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exit ; fi |
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jmc |
1.9 |
if test $chkmeta = 'Y' ; then |
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jmc |
1.4 |
echo diff $dd1/$zz.$yy.meta $dd2 |
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diff $dd1/$zz.$yy.meta $dd2 |
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jmc |
1.3 |
out=$? |
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jmc |
1.9 |
if test $out != 0 ; then echo 'Diff outp=' $out ' ==> stop' ; exit ; fi |
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jmc |
1.3 |
fi |
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done |
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} |
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jmc |
1.9 |
move_outp() |
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{ |
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# move_outp arg_1 |
| 49 |
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# move mitgcm output files to directory 'arg_1' |
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if [ $prt -ge 1 ] ; then echo ' move_outp:' $1 ; fi |
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mv *.data *.meta $1 |
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listF=`ls -1 *.txt STD???.0000 *.log 2> /dev/null` |
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if test "x$listF" != x ; then mv $listF $1 ; fi |
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#- move back sym link: |
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listL=`find $1 -type l` |
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ttd=`echo $listL | wc -w` |
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#echo "ttd=$ttd" |
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if test $ttd != 0 ; then |
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#echo "listL='$listL'" |
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shortList=`ls $listL | sed "s|$1/||"` |
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if [ $prt -ge 2 ] ; then echo " mv back:" $shortList ; fi |
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mv $listL . |
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fi |
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} |
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jmc |
1.10 |
#---------------------------------------------------------------------- |
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prepare_first() |
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{ |
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# prepare_first arg_1 arg_2 arg_3 |
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#----------------------------------------------------------- |
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# from a previous run in "arg_2" dir: collect info for |
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# test: arg_1 (iters) + arg_1 (iter) = 2x arg_1 (iter) ; |
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# move output files from "arg_2" dir to 'arg_3" dir ; |
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# create "data.tst" in arg_2 dir ; |
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# and prepare pickup and params file for 1rst run. |
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#----------------------------------------------------------- |
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nIt=$1 ; dFr=$2 ; dTo=$3 |
| 80 |
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if [ $prt -ge 1 ] ; then |
| 81 |
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echo " run 'prepare_first' : nIt=$nIt, from '$dFr' to '$dTo'" ; fi |
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outpRun="$dFr/STDOUT.0000" |
| 83 |
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#- last pickup written (from previous run): |
| 84 |
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if test -r $outpRun |
| 85 |
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then |
| 86 |
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# grep ' %CHECKPOINT ' $outpRun | tail -1 |
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lastPick=`grep ' %CHECKPOINT ' $outpRun | sed 's/^.*%CHECKPOINT //' | tail -1` |
| 88 |
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if test "x$lastPick" = x |
| 89 |
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then |
| 90 |
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echo "no pickup information written in '$outpRun' from previous run" |
| 91 |
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exit 8 |
| 92 |
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else |
| 93 |
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iter=`echo $lastPick | awk '{print $1}'` |
| 94 |
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sufx=`echo $lastPick | awk '{print $2}'` |
| 95 |
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echo " from '$outpRun' : lastPick='$lastPick' > iter='$iter', sufx='$sufx'" |
| 96 |
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fi |
| 97 |
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else |
| 98 |
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echo "no standard output file '$outpRun' from previous run" |
| 99 |
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exit 7 |
| 100 |
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fi |
| 101 |
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#- create parameter file "data.tst": |
| 102 |
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echo " preparing parameter file 'data.tst' :" |
| 103 |
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pFile="$dFr/data.tst" |
| 104 |
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if test -h $pFile ; then rm -f $pFile ; fi |
| 105 |
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cp -p -f $dFr/data $pFile |
| 106 |
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listOut='startTime endTime nIter0 nTimeSteps nEndIter chkPtFreq pChkPtFreq' |
| 107 |
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listOut=$listOut' pickupSuff usePickupBeforeC54 mdsioLocalDir pickupStrictlyMatch' |
| 108 |
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#- comment out (in data.tst) all parameters from list: 'listOut' |
| 109 |
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for yy in $listOut |
| 110 |
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do |
| 111 |
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if [ $prt -ge 2 ] ; then echo -n ' commenting out:' $yy ; fi |
| 112 |
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nn=`grep -i -c "^ *$yy *=" $pFile` |
| 113 |
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if [ $nn -ge 1 ] |
| 114 |
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then |
| 115 |
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listN=`grep -i -n "^ *$yy *=" $pFile | sed 's/:.*$//'` |
| 116 |
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if [ $prt -ge 2 ] ; then echo " : found on line: $listN" ; fi |
| 117 |
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for ll in $listN |
| 118 |
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do |
| 119 |
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sed "$ll s/^./#&/" $pFile > data.tmp_$$ |
| 120 |
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#diff data.tmp_$$ $pFile |
| 121 |
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mv -f data.tmp_$$ $pFile |
| 122 |
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done |
| 123 |
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else if [ $prt -ge 2 ] ; then echo ' : not found' ; fi |
| 124 |
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fi |
| 125 |
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done |
| 126 |
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if [ $prt -ge 2 ] ; then echo ' ' ; fi |
| 127 |
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# add nIter0 & nTimeSteps in namelist "PARM03": |
| 128 |
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Dbl=`expr $nIt \* 2` |
| 129 |
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sed "/^ *\&PARM03/a \ nTimeSteps=$Dbl," $pFile > data.tmp_$$ |
| 130 |
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mv -f data.tmp_$$ $pFile |
| 131 |
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sed "/^ *\&PARM03/a \ nIter0=$iter," $pFile > data.tmp_$$ |
| 132 |
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mv -f data.tmp_$$ $pFile |
| 133 |
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echo "preparing file '$pFile' : done" |
| 134 |
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if [ $prt -ge 1 ] ; then |
| 135 |
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echo " diff $pFile $dFr/data" ; diff $pFile $dFr/data ; echo ' ' ; |
| 136 |
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fi |
| 137 |
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#---- clean up current dir: move output to temp_tst dir: |
| 138 |
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if test $action = 1 ; then |
| 139 |
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( cd $dFr ; move_outp ../$dTo ) |
| 140 |
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listF=`ls -1 $dFr/STD???.0[0-9][0-9][0-9] 2> /dev/null` |
| 141 |
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if test "x$listF" != x ; then mv $listF $dTo ; fi |
| 142 |
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#- move main parameter file "data": |
| 143 |
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mv $dFr/data $dTo |
| 144 |
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#- do not deal with MNC pickup at all: |
| 145 |
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cp -p -f $dFr/data.pkg data.tmp_$$ |
| 146 |
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mv -f $dFr/data.pkg $dTo |
| 147 |
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mv -f data.tmp_$$ $dFr/data.pkg |
| 148 |
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yy='useMNC' |
| 149 |
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if [ $prt -ge 2 ] ; then echo -n " commenting out: $yy in data.pkg" ; fi |
| 150 |
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nn=`grep -i -c "^ *$yy *=" $dFr/data.pkg` |
| 151 |
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if [ $nn -ge 1 ] ; then |
| 152 |
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listN=`grep -i -n "^ *$yy *=" $dFr/data.pkg | sed 's/:.*$//'` |
| 153 |
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if [ $prt -ge 2 ] ; then echo " : found on line: $listN" ; fi |
| 154 |
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for ll in $listN |
| 155 |
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do |
| 156 |
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sed "$ll s/^./#&/" $dFr/data.pkg > data.tmp_$$ |
| 157 |
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if [ $prt -ge 1 ] ; then echo ' changes in data.pkg' |
| 158 |
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diff data.tmp_$$ $dFr/data.pkg ; echo ' ' ; fi |
| 159 |
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mv -f data.tmp_$$ $dFr/data.pkg |
| 160 |
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done |
| 161 |
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else if [ $prt -ge 2 ] ; then echo ' : not found' ; echo ' ' ; fi |
| 162 |
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fi |
| 163 |
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#-- link back pickup files |
| 164 |
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listS=`ls $dTo/pickup*.${sufx}.* 2> /dev/null | head -1` |
| 165 |
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if test "x$listS" != x ; then |
| 166 |
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if [ $prt -ge 1 ] ; then echo ' link back:' ../$dTo'/pickup*.'${sufx}'*' ; fi |
| 167 |
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( cd $dFr ; ln -s ../$dTo/pickup*.${sufx}* . ) |
| 168 |
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fi |
| 169 |
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#- rename pickup (if needed) |
| 170 |
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nIt0c=`printf "%10.10i\n" $iter` |
| 171 |
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if test $sufx = $nIt0c |
| 172 |
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then |
| 173 |
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echo "no need to change pickup sufix" |
| 174 |
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else |
| 175 |
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listP=`(cd $dFr ; ls pickup*.${sufx}* 2> /dev/null | sed 's/\..*//g' | uniq )` |
| 176 |
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if test "x$listP" = x |
| 177 |
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then echo ' rename' $sufx '->' $nIt0c ': no file to rename' |
| 178 |
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else |
| 179 |
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if [ $prt -ge 1 ] ; then echo ' rename' $sufx '->' $nIt0c 'for all:' $listP ; fi |
| 180 |
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( cd $dFr ; for yy in $listP |
| 181 |
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do rnp_loc $yy.${sufx} $yy.$nIt0c |
| 182 |
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done ) |
| 183 |
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fi |
| 184 |
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fi |
| 185 |
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fi |
| 186 |
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#---------------------------------------------------------------------- |
| 187 |
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} |
| 188 |
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| 189 |
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#=============================================================================== |
| 190 |
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#-- sequential part start here |
| 191 |
jmc |
1.9 |
#=============================================================================== |
| 192 |
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| 193 |
jmc |
1.10 |
#- default: |
| 194 |
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Nit=2 |
| 195 |
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prt=1 # 1 = print some informations ; 2 = print more informations |
| 196 |
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action=1 |
| 197 |
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tmpDir='temp_tst' |
| 198 |
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| 199 |
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pickRef='pickup' |
| 200 |
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# offLine=`grep -i -c '^ *useOffLine *= *\.TRUE\.' data.pkg` |
| 201 |
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# if [ $offLine -ge 1 ] ; then pickRef='pickup_ptracers' ; fi |
| 202 |
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| 203 |
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#- dir where to put the results : |
| 204 |
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dir1=res_2it |
| 205 |
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dir2=res_1iA |
| 206 |
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dir3=res_1iB |
| 207 |
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| 208 |
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#- get number of procs from file "pr_group": |
| 209 |
jmc |
1.9 |
if test -f pr_group ; then |
| 210 |
jmc |
1.10 |
Npr=`cat pr_group | wc -l` |
| 211 |
jmc |
1.9 |
NpOc=`grep -c '\/build_ocn\/mitgcmuv' pr_group` |
| 212 |
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else echo " file: 'pr_group' not found" |
| 213 |
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Npr=0 |
| 214 |
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fi |
| 215 |
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| 216 |
jmc |
1.7 |
#- parse options: |
| 217 |
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CMD='run_cpl_test' |
| 218 |
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MTH= |
| 219 |
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argList=$* |
| 220 |
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for xx in $argList |
| 221 |
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do |
| 222 |
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if test $xx = '-mth' ; then MTH=$xx ; shift ; continue ; fi |
| 223 |
jmc |
1.10 |
if test -x ${CMD}.$xx ; then CMD="${CMD}.$xx" ; shift ; continue ; fi |
| 224 |
jmc |
1.7 |
done |
| 225 |
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| 226 |
jmc |
1.9 |
if [ $# -ne 1 ] ; then |
| 227 |
jmc |
1.7 |
echo "Usage: `basename $0` [opt] flag" |
| 228 |
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echo " Check restart of coupled set-up: compare 1 run of 2 x $Nit it long" |
| 229 |
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echo " with 2 consecutive runs of $Nit it long each" |
| 230 |
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echo "opt = -mth : run script '$CMD' with option '-mth'" |
| 231 |
jmc |
1.10 |
echo "opt = sufx : run script 'run_cpl_test.{sufx}'" |
| 232 |
jmc |
1.7 |
echo " where: flag = 0 -> prepare for 1rst run" |
| 233 |
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echo " flag = r1 -> do 1rst run and step 1" |
| 234 |
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echo " flag = 1 -> move res. after 1rst run & prepare for 2nd" |
| 235 |
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echo " flag = r2 -> do 2nd run and step 2" |
| 236 |
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echo " flag = 2 -> move res. after 2nd run & prepare for 3rd" |
| 237 |
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echo " flag = r3 -> do 3rd run and step 3" |
| 238 |
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echo " flag = 3 -> move res. after 3rd run" |
| 239 |
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echo " flag=(r)N+ , N=1,2,3 => do steps (+run) from: (r)N to 3" |
| 240 |
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echo " flag = 4 -> compare Ocean results" |
| 241 |
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echo " flag = 5 -> compare Atmos results" |
| 242 |
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echo " flag = 6 -> diff pickup files" |
| 243 |
jmc |
1.8 |
echo " flag = 7 -> clean-up output files" |
| 244 |
jmc |
1.7 |
exit |
| 245 |
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fi |
| 246 |
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arg1=$1 |
| 247 |
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xx=`echo $arg1 | sed 's/\+$//'` |
| 248 |
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if test $xx != $arg1 |
| 249 |
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then kUp=`echo $xx | sed 's/^r//'` ; arg1=$xx |
| 250 |
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else kUp=9 ; fi |
| 251 |
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xx=`echo $arg1 | sed 's/^r//'` |
| 252 |
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if test $xx != $arg1 ; then doRun=1 ; arg1=$xx ; else doRun=0 ; fi |
| 253 |
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ksel=$arg1 |
| 254 |
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| 255 |
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CMD="./${CMD} $MTH 3" |
| 256 |
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echo " doRun='$doRun' ; ksel='$ksel' ; kUp='$kUp' ; command='$CMD'" |
| 257 |
jmc |
1.1 |
|
| 258 |
jmc |
1.10 |
#- set dir of Master-Proc for 3 components (coupler == rank_0): |
| 259 |
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if test $Npr = 0 ; then |
| 260 |
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echo " needs file: 'pr_group' to continue" ; exit |
| 261 |
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fi |
| 262 |
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rnkO=1 ; rnkA=`expr $rnkO + $NpOc` |
| 263 |
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| 264 |
jmc |
1.1 |
#make sure that local dir & ~jmc/bin is in the path: |
| 265 |
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#export PATH=${PATH}:. |
| 266 |
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| 267 |
jmc |
1.10 |
#---------------------------------------------------------------------- |
| 268 |
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| 269 |
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if test $ksel = 0 ; then |
| 270 |
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#-- from STDOUT of previous run, get Nb of iters for each component, |
| 271 |
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yy='(PID.TID 0000.0001) nTimeSteps = ' |
| 272 |
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outpRun="rank_$rnkO/STDOUT.0000" |
| 273 |
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nTsO=`grep -A1 "$yy" $outpRun | tail -1 | sed 's/(PID.TID 0000.0001) *//'` |
| 274 |
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outpRun="rank_$rnkA/STDOUT.0000" |
| 275 |
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nTsA=`grep -A1 "$yy" $outpRun | tail -1 | sed 's/(PID.TID 0000.0001) *//'` |
| 276 |
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#- then calculate the ratio and set Nb of time-step for Atmos comp. |
| 277 |
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RatioTs=`expr $nTsA / $nTsO` |
| 278 |
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if [ $prt -ge 1 ] ; then echo " nTsA= $nTsA , nTsO= $nTsO , Ratio= $RatioTs"; fi |
| 279 |
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NiOc=$Nit ; |
| 280 |
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NiAt=`expr $NiOc \* $RatioTs` |
| 281 |
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#---- clean up current dir: rename pickup files and move output to temp_tst dir: |
| 282 |
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/bin/rm -rf $tmpDir.0 $tmpDir.1 $tmpDir.2 |
| 283 |
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mkdir $tmpDir.0 $tmpDir.1 $tmpDir.2 |
| 284 |
jmc |
1.12 |
mv std_outp rank_0/*.clog $tmpDir.0 |
| 285 |
jmc |
1.10 |
mv rank_$rnkO/*.0001.clog $tmpDir.0 |
| 286 |
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mv rank_$rnkA/*.0001.clog $tmpDir.0 |
| 287 |
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echo ' ' |
| 288 |
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echo "=> prepare OCN dir:" |
| 289 |
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prepare_first $NiOc rank_$rnkO $tmpDir.1 |
| 290 |
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echo "=> prepare ATM dir:" |
| 291 |
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prepare_first $NiAt rank_$rnkA $tmpDir.2 |
| 292 |
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#-- prepare for running Dbl |
| 293 |
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echo '=> prepare for running Dbl:' |
| 294 |
|
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Dbl=`expr $NiOc + $NiOc` |
| 295 |
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cp -p rank_$rnkO/data.tst rank_$rnkO/data |
| 296 |
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cp -p rank_$rnkA/data.tst rank_$rnkA/data |
| 297 |
|
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egrep 'nIter0|nTimeSteps' rank_$rnkO/data rank_$rnkA/data |
| 298 |
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fi |
| 299 |
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| 300 |
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#---------------------------------------------------------------------- |
| 301 |
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| 302 |
|
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#- extract length of runs & starting iter number from file "data.tst" |
| 303 |
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# Nit = Nb of iter of 2nd & 3rd run (1rst one is 2 x Nit iter long) |
| 304 |
|
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pFile="rank_$rnkO/data.tst" |
| 305 |
|
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if test -f $pFile ; then |
| 306 |
|
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noc0=`sed -n 's/^ nIter0=//p' $pFile | sed 's/,//g' | sed 's/ //g'` |
| 307 |
|
|
Dbl=`sed -n 's/^ nTimeSteps=//p' $pFile | sed 's/,//g'` |
| 308 |
|
|
NiOc=`expr $Dbl / 2` |
| 309 |
|
|
Nit=$NiOc |
| 310 |
|
|
else echo " file: '$pFile' not found" |
| 311 |
|
|
NiOc=0 ; Nit=2 |
| 312 |
|
|
fi |
| 313 |
|
|
pFile="rank_$rnkA/data.tst" |
| 314 |
|
|
if test -f $pFile ; then |
| 315 |
|
|
nat0=`sed -n 's/^ nIter0=//p' $pFile | sed 's/,//g' | sed 's/ //g'` |
| 316 |
|
|
Dbl=`sed -n 's/^ nTimeSteps=//p' $pFile | sed 's/,//g'` |
| 317 |
|
|
NiAt=`expr $Dbl / 2` |
| 318 |
|
|
else echo " file: '$pFile' not found" |
| 319 |
|
|
NiAt=0 |
| 320 |
|
|
fi |
| 321 |
|
|
if test $NiAt = 0 -o $NiOc = 0 ; then |
| 322 |
|
|
echo " needs 2 data files: 'rank_$rnkO/data.tst' & 'rank_$rnkA/data.tst'" |
| 323 |
|
|
echo " (corresponding to 1rst run) to continue" |
| 324 |
|
|
exit |
| 325 |
|
|
fi |
| 326 |
|
|
|
| 327 |
|
|
nit=$NiOc |
| 328 |
|
|
Dbl=`expr $nit + $nit` |
| 329 |
|
|
noc1=`expr $noc0 + $nit` |
| 330 |
jmc |
1.1 |
noc2=`expr $noc0 + $Dbl` |
| 331 |
jmc |
1.3 |
noc0c=`printf "%10.10i\n" $noc0` |
| 332 |
|
|
noc1c=`printf "%10.10i\n" $noc1` |
| 333 |
|
|
noc2c=`printf "%10.10i\n" $noc2` |
| 334 |
jmc |
1.9 |
echo " Oce (rank_$rnkO):" $noc0 $noc1 $noc2 |
| 335 |
|
|
echo " " $noc0c $noc1c $noc2c |
| 336 |
jmc |
1.1 |
|
| 337 |
jmc |
1.10 |
nit=$NiAt |
| 338 |
|
|
Dbl=`expr $nit + $nit` |
| 339 |
|
|
nat1=`expr $nat0 + $nit` |
| 340 |
jmc |
1.1 |
nat2=`expr $nat0 + $Dbl` |
| 341 |
jmc |
1.3 |
nat0c=`printf "%10.10i\n" $nat0` |
| 342 |
|
|
nat1c=`printf "%10.10i\n" $nat1` |
| 343 |
|
|
nat2c=`printf "%10.10i\n" $nat2` |
| 344 |
jmc |
1.9 |
echo " Atm (rank_$rnkA):" $nat0 $nat1 $nat2 |
| 345 |
|
|
echo " " $nat0c $nat1c $nat2c |
| 346 |
jmc |
1.1 |
|
| 347 |
jmc |
1.10 |
#---------------------------------------------------------------------- |
| 348 |
jmc |
1.1 |
|
| 349 |
jmc |
1.7 |
#-- run & post-process Dbl: |
| 350 |
jmc |
1.9 |
if [ $ksel -eq 1 -o $kUp -le 1 ] ; then |
| 351 |
jmc |
1.7 |
echo ' ' |
| 352 |
|
|
#-- run coupled test (Dbl): |
| 353 |
jmc |
1.9 |
if [ $doRun -eq 1 -o $kUp -lt 1 ] ; then |
| 354 |
jmc |
1.7 |
echo "=> run (Dbl): $CMD" |
| 355 |
|
|
$CMD |
| 356 |
|
|
fi |
| 357 |
jmc |
1.1 |
#-- after running Dbl: |
| 358 |
jmc |
1.10 |
#- check for pickup |
| 359 |
|
|
listOc=`ls -1 rank_$rnkO/$pickRef.ckptA*.data 2> /dev/null` |
| 360 |
|
|
listAt=`ls -1 rank_$rnkA/$pickRef.ckptA*.data 2> /dev/null` |
| 361 |
|
|
if test "x$listOc" = x -o "x$listAt" = x |
| 362 |
|
|
then echo "==> RUN 2 x $NiOc it STOP without writing $pickRef => exit" ; exit 1 |
| 363 |
|
|
else echo "==> END RUN 2 x $NiOc it" ; fi |
| 364 |
|
|
#- move output |
| 365 |
jmc |
1.1 |
rm -rf $dir1 |
| 366 |
|
|
mkdir $dir1 |
| 367 |
jmc |
1.7 |
echo '=> move STDOUT to' $dir1 |
| 368 |
jmc |
1.9 |
mv std_outp rank_0/*.0000.clog rank_$rnkO/*.0001.clog rank_$rnkA/*.0001.clog $dir1 |
| 369 |
|
|
mv rank_$rnkO/STDOUT.0000 $dir1/ocnSTDOUT.0000 |
| 370 |
|
|
mv rank_$rnkA/STDOUT.0000 $dir1/atmSTDOUT.0000 |
| 371 |
jmc |
1.1 |
|
| 372 |
|
|
mkdir $dir1/ocn |
| 373 |
jmc |
1.9 |
cd rank_$rnkO |
| 374 |
jmc |
1.10 |
listP=`ls pickup*.ckptA* | sed 's/\..*//g' | uniq` |
| 375 |
|
|
echo ' listP=' $listP |
| 376 |
|
|
for xx in $listP ; do rnp_loc $xx.ckptA $xx.$noc2c ; done |
| 377 |
jmc |
1.9 |
echo 'move output to' $dir1/ocn |
| 378 |
|
|
move_outp ../$dir1/ocn |
| 379 |
jmc |
1.1 |
cd .. |
| 380 |
|
|
|
| 381 |
|
|
mkdir $dir1/atm |
| 382 |
jmc |
1.9 |
cd rank_$rnkA |
| 383 |
jmc |
1.10 |
listP=`ls pickup*.ckptA* | sed 's/\..*//g' | uniq` |
| 384 |
|
|
echo ' listP=' $listP |
| 385 |
|
|
for xx in $listP ; do rnp_loc $xx.ckptA $xx.$nat2c ; done |
| 386 |
jmc |
1.9 |
echo 'move output to' $dir1/atm |
| 387 |
|
|
move_outp ../$dir1/atm |
| 388 |
jmc |
1.1 |
cd .. |
| 389 |
|
|
|
| 390 |
|
|
#-- prepare for running 1iA |
| 391 |
jmc |
1.7 |
echo '=> prepare for running 1iA:' |
| 392 |
jmc |
1.10 |
nit=$NiOc ; Dbl=`expr $nit + $nit` |
| 393 |
|
|
pFile=rank_$rnkO/data |
| 394 |
|
|
sed "s/^ nTimeSteps=$Dbl/ nTimeSteps=$nit/g" $pFile.tst > $pFile |
| 395 |
|
|
nit=$NiAt ; Dbl=`expr $nit + $nit` |
| 396 |
|
|
pFile=rank_$rnkA/data |
| 397 |
|
|
sed "s/^ nTimeSteps=$Dbl/ nTimeSteps=$nit/g" $pFile.tst > $pFile |
| 398 |
jmc |
1.9 |
egrep 'nIter0|nTimeSteps' rank_$rnkO/data rank_$rnkA/data |
| 399 |
jmc |
1.1 |
fi |
| 400 |
|
|
|
| 401 |
jmc |
1.7 |
#-- run & post-process 1iA: |
| 402 |
jmc |
1.9 |
if [ $ksel -eq 2 -o $kUp -le 2 ] ; then |
| 403 |
jmc |
1.7 |
echo ' ' |
| 404 |
|
|
#-- run coupled test (1iA): |
| 405 |
jmc |
1.9 |
if [ $doRun -eq 1 -o $kUp -lt 2 ] ; then |
| 406 |
jmc |
1.7 |
echo "=> run (1iA): $CMD" |
| 407 |
|
|
$CMD |
| 408 |
|
|
fi |
| 409 |
jmc |
1.1 |
#-- after running 1iA |
| 410 |
jmc |
1.10 |
#- check for pickup |
| 411 |
|
|
listOc=`ls -1 rank_$rnkO/$pickRef.ckptA*.data 2> /dev/null` |
| 412 |
|
|
listAt=`ls -1 rank_$rnkA/$pickRef.ckptA*.data 2> /dev/null` |
| 413 |
|
|
if test "x$listOc" = x -o "x$listAt" = x |
| 414 |
|
|
then echo "==> RUN 1iA STOP without writing $pickRef => exit" ; exit 2 |
| 415 |
|
|
else echo "==> END RUN 1iA" ; fi |
| 416 |
|
|
#- move output |
| 417 |
jmc |
1.1 |
rm -rf $dir2 |
| 418 |
|
|
mkdir $dir2 |
| 419 |
jmc |
1.7 |
echo '=> move STDOUT to' $dir2 |
| 420 |
jmc |
1.9 |
mv std_outp rank_0/*.clog rank_$rnkO/*.clog rank_$rnkA/*.clog $dir2 |
| 421 |
|
|
mv rank_$rnkO/STDOUT.0000 $dir2/ocnSTDOUT.0000 |
| 422 |
|
|
mv rank_$rnkA/STDOUT.0000 $dir2/atmSTDOUT.0000 |
| 423 |
jmc |
1.1 |
|
| 424 |
|
|
mkdir $dir2/ocn |
| 425 |
jmc |
1.9 |
cd rank_$rnkO |
| 426 |
jmc |
1.10 |
listP=`ls pickup*.ckptA* | sed 's/\..*//g' | uniq` |
| 427 |
|
|
echo ' listP=' $listP |
| 428 |
|
|
for xx in $listP ; do rnp_loc $xx.ckptA $xx.$noc1c ; done |
| 429 |
jmc |
1.9 |
# remove pickup*.$noc0c* sym-link: |
| 430 |
|
|
find . ! -name . -prune -type l -name 'pickup*.'${noc0c}'*' -exec rm {} \; |
| 431 |
|
|
echo 'move output to' $dir2/ocn |
| 432 |
|
|
move_outp ../$dir2/ocn |
| 433 |
jmc |
1.1 |
cd .. |
| 434 |
|
|
|
| 435 |
|
|
mkdir $dir2/atm |
| 436 |
jmc |
1.9 |
cd rank_$rnkA |
| 437 |
jmc |
1.10 |
listP=`ls pickup*.ckptA* | sed 's/\..*//g' | uniq` |
| 438 |
|
|
echo ' listP=' $listP |
| 439 |
|
|
for xx in $listP ; do rnp_loc $xx.ckptA $xx.$nat1c ; done |
| 440 |
jmc |
1.9 |
# remove pickup*.$nat0c* sym-link: |
| 441 |
|
|
find . ! -name . -prune -type l -name 'pickup*.'${nat0c}'*' -exec rm {} \; |
| 442 |
|
|
echo 'move output to' $dir2/atm |
| 443 |
|
|
move_outp ../$dir2/atm |
| 444 |
jmc |
1.1 |
cd .. |
| 445 |
|
|
|
| 446 |
|
|
#-- prepare for running 1iB |
| 447 |
jmc |
1.7 |
echo '=> prepare for running 1iB:' |
| 448 |
jmc |
1.9 |
cd rank_$rnkO |
| 449 |
|
|
ln -s ../$dir2/ocn/pickup*.$noc1c.* . |
| 450 |
jmc |
1.10 |
sed "s/^ nIter0=$noc0/ nIter0=$noc1/g" data > data.tmp_$$ |
| 451 |
|
|
mv -f data.tmp_$$ data |
| 452 |
jmc |
1.9 |
cd ../rank_$rnkA |
| 453 |
|
|
ln -s ../$dir2/atm/pickup*.$nat1c.* . |
| 454 |
jmc |
1.10 |
sed "s/^ nIter0=$nat0/ nIter0=$nat1/g" data > data.tmp_$$ |
| 455 |
|
|
mv -f data.tmp_$$ data |
| 456 |
jmc |
1.1 |
cd .. |
| 457 |
jmc |
1.9 |
egrep 'nIter0|nTimeSteps' rank_$rnkO/data rank_$rnkA/data |
| 458 |
jmc |
1.1 |
fi |
| 459 |
|
|
|
| 460 |
jmc |
1.7 |
#-- run & post-process 1iB: |
| 461 |
jmc |
1.9 |
if [ $ksel -eq 3 -o $kUp -le 3 ] ; then |
| 462 |
jmc |
1.7 |
echo ' ' |
| 463 |
|
|
#-- run coupled test (1iB): |
| 464 |
jmc |
1.9 |
if [ $doRun -eq 1 -o $kUp -lt 3 ] ; then |
| 465 |
jmc |
1.7 |
echo "=> run (1iB): $CMD" |
| 466 |
|
|
$CMD |
| 467 |
|
|
fi |
| 468 |
jmc |
1.1 |
#-- after running 1iB |
| 469 |
jmc |
1.10 |
#- check for pickup |
| 470 |
|
|
listOc=`ls -1 rank_$rnkO/$pickRef.ckptA*.data 2> /dev/null` |
| 471 |
|
|
listAt=`ls -1 rank_$rnkA/$pickRef.ckptA*.data 2> /dev/null` |
| 472 |
|
|
if test "x$listOc" = x -o "x$listAt" = x |
| 473 |
|
|
then echo "==> RUN 1iB STOP without writing $pickRef => exit" ; exit 3 |
| 474 |
|
|
else echo "==> END RUN 1iB" ; fi |
| 475 |
|
|
#- move output |
| 476 |
jmc |
1.1 |
rm -rf $dir3 |
| 477 |
|
|
mkdir $dir3 |
| 478 |
jmc |
1.7 |
echo '=> move STDOUT to' $dir3 |
| 479 |
jmc |
1.9 |
mv std_outp rank_0/*.clog rank_$rnkO/*.clog rank_$rnkA/*.clog $dir3 |
| 480 |
|
|
mv rank_$rnkO/STDOUT.0000 $dir3/ocnSTDOUT.0000 |
| 481 |
|
|
mv rank_$rnkA/STDOUT.0000 $dir3/atmSTDOUT.0000 |
| 482 |
jmc |
1.1 |
|
| 483 |
|
|
mkdir $dir3/ocn |
| 484 |
jmc |
1.9 |
cd rank_$rnkO |
| 485 |
jmc |
1.10 |
listP=`ls pickup*.ckptA* | sed 's/\..*//g' | uniq` |
| 486 |
|
|
echo ' listP=' $listP |
| 487 |
|
|
for xx in $listP ; do rnp_loc $xx.ckptA $xx.$noc2c ; done |
| 488 |
jmc |
1.9 |
# remove pickup*.$noc1c* sym-link: |
| 489 |
|
|
find . ! -name . -prune -type l -name 'pickup*.'${noc1c}'*' -exec rm {} \; |
| 490 |
|
|
echo 'move output to' $dir3/ocn |
| 491 |
|
|
move_outp ../$dir3/ocn |
| 492 |
jmc |
1.1 |
cd .. |
| 493 |
|
|
|
| 494 |
|
|
mkdir $dir3/atm |
| 495 |
jmc |
1.9 |
cd rank_$rnkA |
| 496 |
jmc |
1.10 |
listP=`ls pickup*.ckptA* | sed 's/\..*//g' | uniq` |
| 497 |
|
|
echo ' listP=' $listP |
| 498 |
|
|
for xx in $listP ; do rnp_loc $xx.ckptA $xx.$nat2c ; done |
| 499 |
jmc |
1.9 |
# remove pickup*.$nat1c* sym-link: |
| 500 |
|
|
find . ! -name . -prune -type l -name 'pickup*.'${nat1c}'*' -exec rm {} \; |
| 501 |
|
|
echo 'move output to' $dir3/atm |
| 502 |
|
|
move_outp ../$dir3/atm |
| 503 |
jmc |
1.1 |
cd .. |
| 504 |
jmc |
1.10 |
|
| 505 |
jmc |
1.1 |
fi |
| 506 |
|
|
|
| 507 |
|
|
#-- compare output: |
| 508 |
jmc |
1.9 |
if test $ksel = 4 ; then |
| 509 |
jmc |
1.1 |
rm -f ocn.txt |
| 510 |
|
|
echo ' run 2it: ---------- ' > tmp1.txt |
| 511 |
jmc |
1.9 |
grep "cg2d_init_res" $dir1/ocnSTDOUT.0000 \ |
| 512 |
jmc |
1.1 |
| sed 's/.* cg2d_init_res =//' >> tmp1.txt |
| 513 |
jmc |
1.10 |
nit=`expr $NiOc + 2` |
| 514 |
|
|
#echo "NiOc= $NiOc ; nit= $nit" |
| 515 |
|
|
sed "$nit i \ ... 2it continue ..." tmp1.txt > tmp2.txt |
| 516 |
jmc |
1.1 |
rm -f tmp1.txt |
| 517 |
|
|
echo ' run 1iA: ---------- ' > tmp1.txt |
| 518 |
jmc |
1.9 |
grep "cg2d_init_res" $dir2/ocnSTDOUT.0000 \ |
| 519 |
jmc |
1.1 |
| sed 's/.* cg2d_init_res =//' >> tmp1.txt |
| 520 |
|
|
echo ' run 1iB: ---------- ' >> tmp1.txt |
| 521 |
jmc |
1.9 |
grep "cg2d_init_res" $dir3/ocnSTDOUT.0000 \ |
| 522 |
jmc |
1.1 |
| sed 's/.* cg2d_init_res =//' >> tmp1.txt |
| 523 |
|
|
nl tmp1.txt > tmp1.ttt |
| 524 |
|
|
nl tmp2.txt > tmp2.ttt |
| 525 |
|
|
join tmp1.ttt tmp2.ttt | sed 's/[0-9]*//' > ocn.txt |
| 526 |
|
|
rm -f tmp1.ttt tmp2.ttt tmp1.txt tmp2.txt |
| 527 |
|
|
echo ' ' ; echo '-- compare cg2d_init_res (Ocean):' |
| 528 |
|
|
cat ocn.txt |
| 529 |
|
|
exit |
| 530 |
|
|
fi |
| 531 |
|
|
|
| 532 |
jmc |
1.9 |
if test $ksel = 5 ; then |
| 533 |
jmc |
1.1 |
rm -f atm.txt |
| 534 |
|
|
echo ' run 2it: ---------- ' > tmp1.txt |
| 535 |
jmc |
1.9 |
grep "cg2d_init_res" $dir1/atmSTDOUT.0000 \ |
| 536 |
jmc |
1.1 |
| sed 's/.* cg2d_init_res =//' >> tmp1.txt |
| 537 |
jmc |
1.10 |
nit=`expr $NiAt + 2` |
| 538 |
|
|
sed "$nit i \ ... 2it continue ..." tmp1.txt > tmp2.txt |
| 539 |
jmc |
1.1 |
rm -f tmp1.txt |
| 540 |
|
|
echo ' run 1iA: ---------- ' > tmp1.txt |
| 541 |
jmc |
1.9 |
grep "cg2d_init_res" $dir2/atmSTDOUT.0000 \ |
| 542 |
jmc |
1.1 |
| sed 's/.* cg2d_init_res =//' >> tmp1.txt |
| 543 |
|
|
echo ' run 1iB: ---------- ' >> tmp1.txt |
| 544 |
jmc |
1.9 |
grep "cg2d_init_res" $dir3/atmSTDOUT.0000 \ |
| 545 |
jmc |
1.1 |
| sed 's/.* cg2d_init_res =//' >> tmp1.txt |
| 546 |
|
|
nl tmp1.txt > tmp1.ttt |
| 547 |
|
|
nl tmp2.txt > tmp2.ttt |
| 548 |
|
|
join tmp1.ttt tmp2.ttt | sed 's/[0-9]*//' > atm.txt |
| 549 |
|
|
rm -f tmp1.ttt tmp2.ttt tmp1.txt tmp2.txt |
| 550 |
|
|
echo ' ' ; echo '-- compare cg2d_init_res (Atmos):' |
| 551 |
|
|
cat atm.txt |
| 552 |
|
|
exit |
| 553 |
|
|
fi |
| 554 |
|
|
|
| 555 |
|
|
#- compare pickup file: |
| 556 |
jmc |
1.9 |
if test $ksel = 6 ; then |
| 557 |
jmc |
1.1 |
echo ' ' ; echo '=== compare Ocn pickups: ==============' |
| 558 |
jmc |
1.10 |
listP=`( cd $dir1/ocn ; ls pickup*.$noc2c* | sed 's/\..*//g' | uniq )` |
| 559 |
|
|
for xx in $listP |
| 560 |
jmc |
1.1 |
do |
| 561 |
jmc |
1.3 |
dif_tiles $dir1/ocn $dir3/ocn $xx.$noc2c |
| 562 |
jmc |
1.1 |
done |
| 563 |
|
|
echo ' ' ; echo '=== compare Atm pickups: ==============' |
| 564 |
jmc |
1.10 |
listP=`( cd $dir1/atm ; ls pickup*.$nat2c* | sed 's/\..*//g' | uniq )` |
| 565 |
|
|
for xx in $listP |
| 566 |
jmc |
1.1 |
do |
| 567 |
jmc |
1.3 |
dif_tiles $dir1/atm $dir3/atm $xx.$nat2c |
| 568 |
jmc |
1.1 |
done |
| 569 |
|
|
exit |
| 570 |
|
|
fi |
| 571 |
jmc |
1.8 |
|
| 572 |
|
|
#- clean-up and reset: |
| 573 |
jmc |
1.9 |
if test $ksel = 7 ; then |
| 574 |
jmc |
1.8 |
echo "== clean-up and reset :" |
| 575 |
jmc |
1.10 |
cd rank_$rnkO |
| 576 |
|
|
listS=`find . ! -name . -prune -type l -name 'pickup*.'${noc0c}'*'` |
| 577 |
|
|
if test "x$listS" != x ; then |
| 578 |
|
|
echo '--> remove pickup*.'$noc0c'* sym-links:' |
| 579 |
|
|
if [ $prt -ge 2 ] ; then echo " in rank_$rnkO: rm" $listS ; fi |
| 580 |
|
|
rm -f $listS |
| 581 |
|
|
fi |
| 582 |
|
|
cd ../rank_$rnkA |
| 583 |
|
|
listS=`find . ! -name . -prune -type l -name 'pickup*.'${nat0c}'*'` |
| 584 |
|
|
if test "x$listS" != x ; then |
| 585 |
|
|
echo '--> remove pickup*.'$nat0c'* sym-links:' |
| 586 |
|
|
if [ $prt -ge 2 ] ; then echo " in rank_$rnkA: rm" $listS ; fi |
| 587 |
|
|
rm -f $listS |
| 588 |
|
|
fi |
| 589 |
|
|
cd .. |
| 590 |
jmc |
1.8 |
#- move back files from temp_tst dir: |
| 591 |
jmc |
1.9 |
echo '=> restore std data files' |
| 592 |
jmc |
1.10 |
rm -f rank_{0,$rnkO,$rnkA}/data |
| 593 |
|
|
rm -f rank_{$rnkO,$rnkA}/data.tst |
| 594 |
|
|
rm -f rank_{$rnkO,$rnkA}/data.pkg |
| 595 |
jmc |
1.9 |
mv $tmpDir.0/*Ocean.0001.clog $tmpDir.1/* rank_$rnkO |
| 596 |
|
|
mv $tmpDir.0/*Atmos.0001.clog $tmpDir.2/* rank_$rnkA |
| 597 |
|
|
mv $tmpDir.0/std_outp . |
| 598 |
|
|
mv $tmpDir.0/* rank_0 |
| 599 |
|
|
rmdir $tmpDir.0 $tmpDir.1 $tmpDir.2 |
| 600 |
|
|
#echo '--> remove output dir and output files:' |
| 601 |
jmc |
1.11 |
echo ' rm -rf' $dir1 $dir2 $dir3 |
| 602 |
|
|
rm -rf $dir1 $dir2 $dir3 |
| 603 |
jmc |
1.10 |
rm -f atm.txt ocn.txt |
| 604 |
jmc |
1.8 |
exit |
| 605 |
|
|
fi |
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