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jmc |
1.8 |
#! /usr/bin/env bash |
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jmc |
1.1 |
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jmc |
1.10 |
# $Header: /u/gcmpack/MITgcm_contrib/jmc_script/tst_2+2_cpl,v 1.9 2010/12/06 02:57:56 jmc Exp $ |
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jmc |
1.2 |
# $Name: $ |
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jmc |
1.3 |
rnp_loc() |
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{ |
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# rnp_loc arg_1 arg_2 |
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# rename files with prefix = 'arg_1' to files with prefix = 'arg_2' |
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jmc |
1.10 |
if [ $prt -ge 1 ] ; then echo ' rnp_loc:' $1 $2 ; fi |
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jmc |
1.3 |
# rnp -s $1 $2 |
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jmc |
1.4 |
listY=`ls -1 $1*` |
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for yy in $listY |
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jmc |
1.3 |
do |
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jmc |
1.4 |
zz=`echo $yy | sed "s/^$1/$2/"` |
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jmc |
1.10 |
if [ $prt -ge 2 ] ; then echo ' mv' $yy $zz ; fi |
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if test $action = 1 ; then mv $yy $zz ; fi |
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jmc |
1.3 |
done |
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} |
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dif_tiles() |
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{ |
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jmc |
1.4 |
# dif_data_loc dd1 dd2 file |
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# for all tiles ==> do diff dd1/file dd2/file' |
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dd1=$1 ; dd2=$2 ; zz=$3 |
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jmc |
1.9 |
chkmeta='N' |
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jmc |
1.4 |
listY=`(cd $dd1 ; ls $zz.*.data | sed "s/$zz\.//" | sed "s/\.data//")` |
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echo '--> file='$zz', listY='$listY |
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for yy in $listY |
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jmc |
1.3 |
do |
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jmc |
1.4 |
echo diff $dd1/$zz.$yy.data $dd2 |
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diff $dd1/$zz.$yy.data $dd2 |
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jmc |
1.3 |
out=$? |
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if test $out != 0 |
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then echo 'Diff outp=' $out ' ==> stop' |
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exit ; fi |
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jmc |
1.9 |
if test $chkmeta = 'Y' ; then |
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jmc |
1.4 |
echo diff $dd1/$zz.$yy.meta $dd2 |
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diff $dd1/$zz.$yy.meta $dd2 |
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jmc |
1.3 |
out=$? |
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jmc |
1.9 |
if test $out != 0 ; then echo 'Diff outp=' $out ' ==> stop' ; exit ; fi |
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jmc |
1.3 |
fi |
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done |
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} |
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jmc |
1.9 |
move_outp() |
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{ |
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# move_outp arg_1 |
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# move mitgcm output files to directory 'arg_1' |
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if [ $prt -ge 1 ] ; then echo ' move_outp:' $1 ; fi |
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mv *.data *.meta $1 |
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listF=`ls -1 *.txt STD???.0000 *.log 2> /dev/null` |
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if test "x$listF" != x ; then mv $listF $1 ; fi |
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#- move back sym link: |
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listL=`find $1 -type l` |
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ttd=`echo $listL | wc -w` |
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#echo "ttd=$ttd" |
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if test $ttd != 0 ; then |
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#echo "listL='$listL'" |
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shortList=`ls $listL | sed "s|$1/||"` |
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if [ $prt -ge 2 ] ; then echo " mv back:" $shortList ; fi |
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mv $listL . |
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fi |
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} |
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jmc |
1.10 |
#---------------------------------------------------------------------- |
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prepare_first() |
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{ |
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# prepare_first arg_1 arg_2 arg_3 |
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#----------------------------------------------------------- |
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# from a previous run in "arg_2" dir: collect info for |
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# test: arg_1 (iters) + arg_1 (iter) = 2x arg_1 (iter) ; |
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# move output files from "arg_2" dir to 'arg_3" dir ; |
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# create "data.tst" in arg_2 dir ; |
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# and prepare pickup and params file for 1rst run. |
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#----------------------------------------------------------- |
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nIt=$1 ; dFr=$2 ; dTo=$3 |
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if [ $prt -ge 1 ] ; then |
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echo " run 'prepare_first' : nIt=$nIt, from '$dFr' to '$dTo'" ; fi |
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outpRun="$dFr/STDOUT.0000" |
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#- last pickup written (from previous run): |
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if test -r $outpRun |
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then |
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# grep ' %CHECKPOINT ' $outpRun | tail -1 |
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lastPick=`grep ' %CHECKPOINT ' $outpRun | sed 's/^.*%CHECKPOINT //' | tail -1` |
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if test "x$lastPick" = x |
89 |
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then |
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echo "no pickup information written in '$outpRun' from previous run" |
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exit 8 |
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else |
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iter=`echo $lastPick | awk '{print $1}'` |
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sufx=`echo $lastPick | awk '{print $2}'` |
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echo " from '$outpRun' : lastPick='$lastPick' > iter='$iter', sufx='$sufx'" |
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fi |
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else |
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echo "no standard output file '$outpRun' from previous run" |
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exit 7 |
100 |
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fi |
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#- create parameter file "data.tst": |
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echo " preparing parameter file 'data.tst' :" |
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pFile="$dFr/data.tst" |
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if test -h $pFile ; then rm -f $pFile ; fi |
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cp -p -f $dFr/data $pFile |
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listOut='startTime endTime nIter0 nTimeSteps nEndIter chkPtFreq pChkPtFreq' |
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listOut=$listOut' pickupSuff usePickupBeforeC54 mdsioLocalDir pickupStrictlyMatch' |
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#- comment out (in data.tst) all parameters from list: 'listOut' |
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for yy in $listOut |
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do |
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if [ $prt -ge 2 ] ; then echo -n ' commenting out:' $yy ; fi |
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nn=`grep -i -c "^ *$yy *=" $pFile` |
113 |
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if [ $nn -ge 1 ] |
114 |
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then |
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listN=`grep -i -n "^ *$yy *=" $pFile | sed 's/:.*$//'` |
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if [ $prt -ge 2 ] ; then echo " : found on line: $listN" ; fi |
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for ll in $listN |
118 |
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do |
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sed "$ll s/^./#&/" $pFile > data.tmp_$$ |
120 |
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#diff data.tmp_$$ $pFile |
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mv -f data.tmp_$$ $pFile |
122 |
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done |
123 |
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else if [ $prt -ge 2 ] ; then echo ' : not found' ; fi |
124 |
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fi |
125 |
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done |
126 |
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if [ $prt -ge 2 ] ; then echo ' ' ; fi |
127 |
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# add nIter0 & nTimeSteps in namelist "PARM03": |
128 |
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Dbl=`expr $nIt \* 2` |
129 |
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sed "/^ *\&PARM03/a \ nTimeSteps=$Dbl," $pFile > data.tmp_$$ |
130 |
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mv -f data.tmp_$$ $pFile |
131 |
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sed "/^ *\&PARM03/a \ nIter0=$iter," $pFile > data.tmp_$$ |
132 |
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mv -f data.tmp_$$ $pFile |
133 |
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echo "preparing file '$pFile' : done" |
134 |
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if [ $prt -ge 1 ] ; then |
135 |
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echo " diff $pFile $dFr/data" ; diff $pFile $dFr/data ; echo ' ' ; |
136 |
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fi |
137 |
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#---- clean up current dir: move output to temp_tst dir: |
138 |
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if test $action = 1 ; then |
139 |
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( cd $dFr ; move_outp ../$dTo ) |
140 |
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listF=`ls -1 $dFr/STD???.0[0-9][0-9][0-9] 2> /dev/null` |
141 |
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if test "x$listF" != x ; then mv $listF $dTo ; fi |
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#- move main parameter file "data": |
143 |
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mv $dFr/data $dTo |
144 |
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#- do not deal with MNC pickup at all: |
145 |
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cp -p -f $dFr/data.pkg data.tmp_$$ |
146 |
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mv -f $dFr/data.pkg $dTo |
147 |
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mv -f data.tmp_$$ $dFr/data.pkg |
148 |
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yy='useMNC' |
149 |
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if [ $prt -ge 2 ] ; then echo -n " commenting out: $yy in data.pkg" ; fi |
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nn=`grep -i -c "^ *$yy *=" $dFr/data.pkg` |
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if [ $nn -ge 1 ] ; then |
152 |
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listN=`grep -i -n "^ *$yy *=" $dFr/data.pkg | sed 's/:.*$//'` |
153 |
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if [ $prt -ge 2 ] ; then echo " : found on line: $listN" ; fi |
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for ll in $listN |
155 |
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do |
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sed "$ll s/^./#&/" $dFr/data.pkg > data.tmp_$$ |
157 |
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if [ $prt -ge 1 ] ; then echo ' changes in data.pkg' |
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diff data.tmp_$$ $dFr/data.pkg ; echo ' ' ; fi |
159 |
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mv -f data.tmp_$$ $dFr/data.pkg |
160 |
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done |
161 |
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else if [ $prt -ge 2 ] ; then echo ' : not found' ; echo ' ' ; fi |
162 |
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fi |
163 |
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#-- link back pickup files |
164 |
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listS=`ls $dTo/pickup*.${sufx}.* 2> /dev/null | head -1` |
165 |
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if test "x$listS" != x ; then |
166 |
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if [ $prt -ge 1 ] ; then echo ' link back:' ../$dTo'/pickup*.'${sufx}'*' ; fi |
167 |
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( cd $dFr ; ln -s ../$dTo/pickup*.${sufx}* . ) |
168 |
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fi |
169 |
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#- rename pickup (if needed) |
170 |
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nIt0c=`printf "%10.10i\n" $iter` |
171 |
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if test $sufx = $nIt0c |
172 |
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then |
173 |
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echo "no need to change pickup sufix" |
174 |
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else |
175 |
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listP=`(cd $dFr ; ls pickup*.${sufx}* 2> /dev/null | sed 's/\..*//g' | uniq )` |
176 |
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if test "x$listP" = x |
177 |
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then echo ' rename' $sufx '->' $nIt0c ': no file to rename' |
178 |
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else |
179 |
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if [ $prt -ge 1 ] ; then echo ' rename' $sufx '->' $nIt0c 'for all:' $listP ; fi |
180 |
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( cd $dFr ; for yy in $listP |
181 |
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do rnp_loc $yy.${sufx} $yy.$nIt0c |
182 |
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done ) |
183 |
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fi |
184 |
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fi |
185 |
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fi |
186 |
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#---------------------------------------------------------------------- |
187 |
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} |
188 |
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189 |
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#=============================================================================== |
190 |
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#-- sequential part start here |
191 |
jmc |
1.9 |
#=============================================================================== |
192 |
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193 |
jmc |
1.10 |
#- default: |
194 |
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Nit=2 |
195 |
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prt=1 # 1 = print some informations ; 2 = print more informations |
196 |
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action=1 |
197 |
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tmpDir='temp_tst' |
198 |
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199 |
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pickRef='pickup' |
200 |
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# offLine=`grep -i -c '^ *useOffLine *= *\.TRUE\.' data.pkg` |
201 |
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# if [ $offLine -ge 1 ] ; then pickRef='pickup_ptracers' ; fi |
202 |
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203 |
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#- dir where to put the results : |
204 |
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dir1=res_2it |
205 |
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dir2=res_1iA |
206 |
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dir3=res_1iB |
207 |
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208 |
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#- get number of procs from file "pr_group": |
209 |
jmc |
1.9 |
if test -f pr_group ; then |
210 |
jmc |
1.10 |
Npr=`cat pr_group | wc -l` |
211 |
jmc |
1.9 |
NpOc=`grep -c '\/build_ocn\/mitgcmuv' pr_group` |
212 |
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else echo " file: 'pr_group' not found" |
213 |
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Npr=0 |
214 |
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fi |
215 |
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216 |
jmc |
1.7 |
#- parse options: |
217 |
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CMD='run_cpl_test' |
218 |
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MTH= |
219 |
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argList=$* |
220 |
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for xx in $argList |
221 |
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do |
222 |
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if test $xx = '-mth' ; then MTH=$xx ; shift ; continue ; fi |
223 |
jmc |
1.10 |
if test -x ${CMD}.$xx ; then CMD="${CMD}.$xx" ; shift ; continue ; fi |
224 |
jmc |
1.7 |
done |
225 |
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226 |
jmc |
1.9 |
if [ $# -ne 1 ] ; then |
227 |
jmc |
1.7 |
echo "Usage: `basename $0` [opt] flag" |
228 |
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echo " Check restart of coupled set-up: compare 1 run of 2 x $Nit it long" |
229 |
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echo " with 2 consecutive runs of $Nit it long each" |
230 |
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echo "opt = -mth : run script '$CMD' with option '-mth'" |
231 |
jmc |
1.10 |
echo "opt = sufx : run script 'run_cpl_test.{sufx}'" |
232 |
jmc |
1.7 |
echo " where: flag = 0 -> prepare for 1rst run" |
233 |
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echo " flag = r1 -> do 1rst run and step 1" |
234 |
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echo " flag = 1 -> move res. after 1rst run & prepare for 2nd" |
235 |
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echo " flag = r2 -> do 2nd run and step 2" |
236 |
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echo " flag = 2 -> move res. after 2nd run & prepare for 3rd" |
237 |
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echo " flag = r3 -> do 3rd run and step 3" |
238 |
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echo " flag = 3 -> move res. after 3rd run" |
239 |
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echo " flag=(r)N+ , N=1,2,3 => do steps (+run) from: (r)N to 3" |
240 |
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echo " flag = 4 -> compare Ocean results" |
241 |
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echo " flag = 5 -> compare Atmos results" |
242 |
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echo " flag = 6 -> diff pickup files" |
243 |
jmc |
1.8 |
echo " flag = 7 -> clean-up output files" |
244 |
jmc |
1.7 |
exit |
245 |
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fi |
246 |
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arg1=$1 |
247 |
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xx=`echo $arg1 | sed 's/\+$//'` |
248 |
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if test $xx != $arg1 |
249 |
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then kUp=`echo $xx | sed 's/^r//'` ; arg1=$xx |
250 |
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else kUp=9 ; fi |
251 |
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xx=`echo $arg1 | sed 's/^r//'` |
252 |
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if test $xx != $arg1 ; then doRun=1 ; arg1=$xx ; else doRun=0 ; fi |
253 |
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ksel=$arg1 |
254 |
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255 |
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CMD="./${CMD} $MTH 3" |
256 |
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echo " doRun='$doRun' ; ksel='$ksel' ; kUp='$kUp' ; command='$CMD'" |
257 |
jmc |
1.1 |
|
258 |
jmc |
1.10 |
#- set dir of Master-Proc for 3 components (coupler == rank_0): |
259 |
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if test $Npr = 0 ; then |
260 |
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echo " needs file: 'pr_group' to continue" ; exit |
261 |
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fi |
262 |
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rnkO=1 ; rnkA=`expr $rnkO + $NpOc` |
263 |
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264 |
jmc |
1.1 |
#make sure that local dir & ~jmc/bin is in the path: |
265 |
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#export PATH=${PATH}:. |
266 |
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267 |
jmc |
1.10 |
#---------------------------------------------------------------------- |
268 |
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269 |
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if test $ksel = 0 ; then |
270 |
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#-- from STDOUT of previous run, get Nb of iters for each component, |
271 |
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yy='(PID.TID 0000.0001) nTimeSteps = ' |
272 |
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outpRun="rank_$rnkO/STDOUT.0000" |
273 |
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nTsO=`grep -A1 "$yy" $outpRun | tail -1 | sed 's/(PID.TID 0000.0001) *//'` |
274 |
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outpRun="rank_$rnkA/STDOUT.0000" |
275 |
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nTsA=`grep -A1 "$yy" $outpRun | tail -1 | sed 's/(PID.TID 0000.0001) *//'` |
276 |
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#- then calculate the ratio and set Nb of time-step for Atmos comp. |
277 |
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RatioTs=`expr $nTsA / $nTsO` |
278 |
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if [ $prt -ge 1 ] ; then echo " nTsA= $nTsA , nTsO= $nTsO , Ratio= $RatioTs"; fi |
279 |
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NiOc=$Nit ; |
280 |
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NiAt=`expr $NiOc \* $RatioTs` |
281 |
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#---- clean up current dir: rename pickup files and move output to temp_tst dir: |
282 |
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/bin/rm -rf $tmpDir.0 $tmpDir.1 $tmpDir.2 |
283 |
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mkdir $tmpDir.0 $tmpDir.1 $tmpDir.2 |
284 |
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mv std_outp rank_0/*.clog rank_0/data $tmpDir.0 |
285 |
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mv rank_$rnkO/*.0001.clog $tmpDir.0 |
286 |
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mv rank_$rnkA/*.0001.clog $tmpDir.0 |
287 |
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echo ' ' |
288 |
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echo "=> prepare OCN dir:" |
289 |
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prepare_first $NiOc rank_$rnkO $tmpDir.1 |
290 |
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echo "=> prepare ATM dir:" |
291 |
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prepare_first $NiAt rank_$rnkA $tmpDir.2 |
292 |
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#-- prepare for running Dbl |
293 |
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echo '=> prepare for running Dbl:' |
294 |
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Dbl=`expr $NiOc + $NiOc` |
295 |
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sed "1 s/[0-9]*/$Dbl/" input_cpl/data > rank_0/data |
296 |
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cp -p rank_$rnkO/data.tst rank_$rnkO/data |
297 |
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cp -p rank_$rnkA/data.tst rank_$rnkA/data |
298 |
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echo 'rank_0/data:' `head -1 rank_0/data` |
299 |
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egrep 'nIter0|nTimeSteps' rank_$rnkO/data rank_$rnkA/data |
300 |
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fi |
301 |
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302 |
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#---------------------------------------------------------------------- |
303 |
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304 |
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#- extract length of runs & starting iter number from file "data.tst" |
305 |
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# Nit = Nb of iter of 2nd & 3rd run (1rst one is 2 x Nit iter long) |
306 |
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pFile="rank_$rnkO/data.tst" |
307 |
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if test -f $pFile ; then |
308 |
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noc0=`sed -n 's/^ nIter0=//p' $pFile | sed 's/,//g' | sed 's/ //g'` |
309 |
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Dbl=`sed -n 's/^ nTimeSteps=//p' $pFile | sed 's/,//g'` |
310 |
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NiOc=`expr $Dbl / 2` |
311 |
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Nit=$NiOc |
312 |
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else echo " file: '$pFile' not found" |
313 |
|
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NiOc=0 ; Nit=2 |
314 |
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fi |
315 |
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pFile="rank_$rnkA/data.tst" |
316 |
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if test -f $pFile ; then |
317 |
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nat0=`sed -n 's/^ nIter0=//p' $pFile | sed 's/,//g' | sed 's/ //g'` |
318 |
|
|
Dbl=`sed -n 's/^ nTimeSteps=//p' $pFile | sed 's/,//g'` |
319 |
|
|
NiAt=`expr $Dbl / 2` |
320 |
|
|
else echo " file: '$pFile' not found" |
321 |
|
|
NiAt=0 |
322 |
|
|
fi |
323 |
|
|
if test $NiAt = 0 -o $NiOc = 0 ; then |
324 |
|
|
echo " needs 2 data files: 'rank_$rnkO/data.tst' & 'rank_$rnkA/data.tst'" |
325 |
|
|
echo " (corresponding to 1rst run) to continue" |
326 |
|
|
exit |
327 |
|
|
fi |
328 |
|
|
|
329 |
|
|
nit=$NiOc |
330 |
|
|
Dbl=`expr $nit + $nit` |
331 |
|
|
noc1=`expr $noc0 + $nit` |
332 |
jmc |
1.1 |
noc2=`expr $noc0 + $Dbl` |
333 |
jmc |
1.3 |
noc0c=`printf "%10.10i\n" $noc0` |
334 |
|
|
noc1c=`printf "%10.10i\n" $noc1` |
335 |
|
|
noc2c=`printf "%10.10i\n" $noc2` |
336 |
jmc |
1.9 |
echo " Oce (rank_$rnkO):" $noc0 $noc1 $noc2 |
337 |
|
|
echo " " $noc0c $noc1c $noc2c |
338 |
jmc |
1.1 |
|
339 |
jmc |
1.10 |
nit=$NiAt |
340 |
|
|
Dbl=`expr $nit + $nit` |
341 |
|
|
nat1=`expr $nat0 + $nit` |
342 |
jmc |
1.1 |
nat2=`expr $nat0 + $Dbl` |
343 |
jmc |
1.3 |
nat0c=`printf "%10.10i\n" $nat0` |
344 |
|
|
nat1c=`printf "%10.10i\n" $nat1` |
345 |
|
|
nat2c=`printf "%10.10i\n" $nat2` |
346 |
jmc |
1.9 |
echo " Atm (rank_$rnkA):" $nat0 $nat1 $nat2 |
347 |
|
|
echo " " $nat0c $nat1c $nat2c |
348 |
jmc |
1.1 |
|
349 |
jmc |
1.10 |
#---------------------------------------------------------------------- |
350 |
jmc |
1.1 |
|
351 |
jmc |
1.7 |
#-- run & post-process Dbl: |
352 |
jmc |
1.9 |
if [ $ksel -eq 1 -o $kUp -le 1 ] ; then |
353 |
jmc |
1.7 |
echo ' ' |
354 |
|
|
#-- run coupled test (Dbl): |
355 |
jmc |
1.9 |
if [ $doRun -eq 1 -o $kUp -lt 1 ] ; then |
356 |
jmc |
1.7 |
echo "=> run (Dbl): $CMD" |
357 |
|
|
$CMD |
358 |
|
|
fi |
359 |
jmc |
1.1 |
#-- after running Dbl: |
360 |
jmc |
1.10 |
#- check for pickup |
361 |
|
|
listOc=`ls -1 rank_$rnkO/$pickRef.ckptA*.data 2> /dev/null` |
362 |
|
|
listAt=`ls -1 rank_$rnkA/$pickRef.ckptA*.data 2> /dev/null` |
363 |
|
|
if test "x$listOc" = x -o "x$listAt" = x |
364 |
|
|
then echo "==> RUN 2 x $NiOc it STOP without writing $pickRef => exit" ; exit 1 |
365 |
|
|
else echo "==> END RUN 2 x $NiOc it" ; fi |
366 |
|
|
#- move output |
367 |
jmc |
1.1 |
rm -rf $dir1 |
368 |
|
|
mkdir $dir1 |
369 |
jmc |
1.7 |
echo '=> move STDOUT to' $dir1 |
370 |
jmc |
1.9 |
mv std_outp rank_0/*.0000.clog rank_$rnkO/*.0001.clog rank_$rnkA/*.0001.clog $dir1 |
371 |
|
|
mv rank_$rnkO/STDOUT.0000 $dir1/ocnSTDOUT.0000 |
372 |
|
|
mv rank_$rnkA/STDOUT.0000 $dir1/atmSTDOUT.0000 |
373 |
jmc |
1.1 |
|
374 |
|
|
mkdir $dir1/ocn |
375 |
jmc |
1.9 |
cd rank_$rnkO |
376 |
jmc |
1.10 |
listP=`ls pickup*.ckptA* | sed 's/\..*//g' | uniq` |
377 |
|
|
echo ' listP=' $listP |
378 |
|
|
for xx in $listP ; do rnp_loc $xx.ckptA $xx.$noc2c ; done |
379 |
jmc |
1.9 |
echo 'move output to' $dir1/ocn |
380 |
|
|
move_outp ../$dir1/ocn |
381 |
jmc |
1.1 |
cd .. |
382 |
|
|
|
383 |
|
|
mkdir $dir1/atm |
384 |
jmc |
1.9 |
cd rank_$rnkA |
385 |
jmc |
1.10 |
listP=`ls pickup*.ckptA* | sed 's/\..*//g' | uniq` |
386 |
|
|
echo ' listP=' $listP |
387 |
|
|
for xx in $listP ; do rnp_loc $xx.ckptA $xx.$nat2c ; done |
388 |
jmc |
1.9 |
echo 'move output to' $dir1/atm |
389 |
|
|
move_outp ../$dir1/atm |
390 |
jmc |
1.1 |
cd .. |
391 |
|
|
|
392 |
|
|
#-- prepare for running 1iA |
393 |
jmc |
1.7 |
echo '=> prepare for running 1iA:' |
394 |
jmc |
1.10 |
nit=$NiOc ; Dbl=`expr $nit + $nit` |
395 |
|
|
sed "1 s/[0-9]*/$nit/" input_cpl/data > rank_0/data |
396 |
|
|
pFile=rank_$rnkO/data |
397 |
|
|
sed "s/^ nTimeSteps=$Dbl/ nTimeSteps=$nit/g" $pFile.tst > $pFile |
398 |
|
|
nit=$NiAt ; Dbl=`expr $nit + $nit` |
399 |
|
|
pFile=rank_$rnkA/data |
400 |
|
|
sed "s/^ nTimeSteps=$Dbl/ nTimeSteps=$nit/g" $pFile.tst > $pFile |
401 |
jmc |
1.1 |
echo 'rank_0/data:' `head -1 rank_0/data` |
402 |
jmc |
1.9 |
egrep 'nIter0|nTimeSteps' rank_$rnkO/data rank_$rnkA/data |
403 |
jmc |
1.1 |
fi |
404 |
|
|
|
405 |
jmc |
1.7 |
#-- run & post-process 1iA: |
406 |
jmc |
1.9 |
if [ $ksel -eq 2 -o $kUp -le 2 ] ; then |
407 |
jmc |
1.7 |
echo ' ' |
408 |
|
|
#-- run coupled test (1iA): |
409 |
jmc |
1.9 |
if [ $doRun -eq 1 -o $kUp -lt 2 ] ; then |
410 |
jmc |
1.7 |
echo "=> run (1iA): $CMD" |
411 |
|
|
$CMD |
412 |
|
|
fi |
413 |
jmc |
1.1 |
#-- after running 1iA |
414 |
jmc |
1.10 |
#- check for pickup |
415 |
|
|
listOc=`ls -1 rank_$rnkO/$pickRef.ckptA*.data 2> /dev/null` |
416 |
|
|
listAt=`ls -1 rank_$rnkA/$pickRef.ckptA*.data 2> /dev/null` |
417 |
|
|
if test "x$listOc" = x -o "x$listAt" = x |
418 |
|
|
then echo "==> RUN 1iA STOP without writing $pickRef => exit" ; exit 2 |
419 |
|
|
else echo "==> END RUN 1iA" ; fi |
420 |
|
|
#- move output |
421 |
jmc |
1.1 |
rm -rf $dir2 |
422 |
|
|
mkdir $dir2 |
423 |
jmc |
1.7 |
echo '=> move STDOUT to' $dir2 |
424 |
jmc |
1.9 |
mv std_outp rank_0/*.clog rank_$rnkO/*.clog rank_$rnkA/*.clog $dir2 |
425 |
|
|
mv rank_$rnkO/STDOUT.0000 $dir2/ocnSTDOUT.0000 |
426 |
|
|
mv rank_$rnkA/STDOUT.0000 $dir2/atmSTDOUT.0000 |
427 |
jmc |
1.1 |
|
428 |
|
|
mkdir $dir2/ocn |
429 |
jmc |
1.9 |
cd rank_$rnkO |
430 |
jmc |
1.10 |
listP=`ls pickup*.ckptA* | sed 's/\..*//g' | uniq` |
431 |
|
|
echo ' listP=' $listP |
432 |
|
|
for xx in $listP ; do rnp_loc $xx.ckptA $xx.$noc1c ; done |
433 |
jmc |
1.9 |
# remove pickup*.$noc0c* sym-link: |
434 |
|
|
find . ! -name . -prune -type l -name 'pickup*.'${noc0c}'*' -exec rm {} \; |
435 |
|
|
echo 'move output to' $dir2/ocn |
436 |
|
|
move_outp ../$dir2/ocn |
437 |
jmc |
1.1 |
cd .. |
438 |
|
|
|
439 |
|
|
mkdir $dir2/atm |
440 |
jmc |
1.9 |
cd rank_$rnkA |
441 |
jmc |
1.10 |
listP=`ls pickup*.ckptA* | sed 's/\..*//g' | uniq` |
442 |
|
|
echo ' listP=' $listP |
443 |
|
|
for xx in $listP ; do rnp_loc $xx.ckptA $xx.$nat1c ; done |
444 |
jmc |
1.9 |
# remove pickup*.$nat0c* sym-link: |
445 |
|
|
find . ! -name . -prune -type l -name 'pickup*.'${nat0c}'*' -exec rm {} \; |
446 |
|
|
echo 'move output to' $dir2/atm |
447 |
|
|
move_outp ../$dir2/atm |
448 |
jmc |
1.1 |
cd .. |
449 |
|
|
|
450 |
|
|
#-- prepare for running 1iB |
451 |
jmc |
1.7 |
echo '=> prepare for running 1iB:' |
452 |
jmc |
1.9 |
cd rank_$rnkO |
453 |
|
|
ln -s ../$dir2/ocn/pickup*.$noc1c.* . |
454 |
jmc |
1.10 |
sed "s/^ nIter0=$noc0/ nIter0=$noc1/g" data > data.tmp_$$ |
455 |
|
|
mv -f data.tmp_$$ data |
456 |
jmc |
1.9 |
cd ../rank_$rnkA |
457 |
|
|
ln -s ../$dir2/atm/pickup*.$nat1c.* . |
458 |
jmc |
1.10 |
sed "s/^ nIter0=$nat0/ nIter0=$nat1/g" data > data.tmp_$$ |
459 |
|
|
mv -f data.tmp_$$ data |
460 |
jmc |
1.1 |
cd .. |
461 |
|
|
echo 'rank_0/data:' `head -1 rank_0/data` |
462 |
jmc |
1.9 |
egrep 'nIter0|nTimeSteps' rank_$rnkO/data rank_$rnkA/data |
463 |
jmc |
1.1 |
fi |
464 |
|
|
|
465 |
jmc |
1.7 |
#-- run & post-process 1iB: |
466 |
jmc |
1.9 |
if [ $ksel -eq 3 -o $kUp -le 3 ] ; then |
467 |
jmc |
1.7 |
echo ' ' |
468 |
|
|
#-- run coupled test (1iB): |
469 |
jmc |
1.9 |
if [ $doRun -eq 1 -o $kUp -lt 3 ] ; then |
470 |
jmc |
1.7 |
echo "=> run (1iB): $CMD" |
471 |
|
|
$CMD |
472 |
|
|
fi |
473 |
jmc |
1.1 |
#-- after running 1iB |
474 |
jmc |
1.10 |
#- check for pickup |
475 |
|
|
listOc=`ls -1 rank_$rnkO/$pickRef.ckptA*.data 2> /dev/null` |
476 |
|
|
listAt=`ls -1 rank_$rnkA/$pickRef.ckptA*.data 2> /dev/null` |
477 |
|
|
if test "x$listOc" = x -o "x$listAt" = x |
478 |
|
|
then echo "==> RUN 1iB STOP without writing $pickRef => exit" ; exit 3 |
479 |
|
|
else echo "==> END RUN 1iB" ; fi |
480 |
|
|
#- move output |
481 |
jmc |
1.1 |
rm -rf $dir3 |
482 |
|
|
mkdir $dir3 |
483 |
jmc |
1.7 |
echo '=> move STDOUT to' $dir3 |
484 |
jmc |
1.9 |
mv std_outp rank_0/*.clog rank_$rnkO/*.clog rank_$rnkA/*.clog $dir3 |
485 |
|
|
mv rank_$rnkO/STDOUT.0000 $dir3/ocnSTDOUT.0000 |
486 |
|
|
mv rank_$rnkA/STDOUT.0000 $dir3/atmSTDOUT.0000 |
487 |
jmc |
1.1 |
|
488 |
|
|
mkdir $dir3/ocn |
489 |
jmc |
1.9 |
cd rank_$rnkO |
490 |
jmc |
1.10 |
listP=`ls pickup*.ckptA* | sed 's/\..*//g' | uniq` |
491 |
|
|
echo ' listP=' $listP |
492 |
|
|
for xx in $listP ; do rnp_loc $xx.ckptA $xx.$noc2c ; done |
493 |
jmc |
1.9 |
# remove pickup*.$noc1c* sym-link: |
494 |
|
|
find . ! -name . -prune -type l -name 'pickup*.'${noc1c}'*' -exec rm {} \; |
495 |
|
|
echo 'move output to' $dir3/ocn |
496 |
|
|
move_outp ../$dir3/ocn |
497 |
jmc |
1.1 |
cd .. |
498 |
|
|
|
499 |
|
|
mkdir $dir3/atm |
500 |
jmc |
1.9 |
cd rank_$rnkA |
501 |
jmc |
1.10 |
listP=`ls pickup*.ckptA* | sed 's/\..*//g' | uniq` |
502 |
|
|
echo ' listP=' $listP |
503 |
|
|
for xx in $listP ; do rnp_loc $xx.ckptA $xx.$nat2c ; done |
504 |
jmc |
1.9 |
# remove pickup*.$nat1c* sym-link: |
505 |
|
|
find . ! -name . -prune -type l -name 'pickup*.'${nat1c}'*' -exec rm {} \; |
506 |
|
|
echo 'move output to' $dir3/atm |
507 |
|
|
move_outp ../$dir3/atm |
508 |
jmc |
1.1 |
cd .. |
509 |
jmc |
1.10 |
|
510 |
jmc |
1.1 |
fi |
511 |
|
|
|
512 |
|
|
#-- compare output: |
513 |
jmc |
1.9 |
if test $ksel = 4 ; then |
514 |
jmc |
1.1 |
rm -f ocn.txt |
515 |
|
|
echo ' run 2it: ---------- ' > tmp1.txt |
516 |
jmc |
1.9 |
grep "cg2d_init_res" $dir1/ocnSTDOUT.0000 \ |
517 |
jmc |
1.1 |
| sed 's/.* cg2d_init_res =//' >> tmp1.txt |
518 |
jmc |
1.10 |
nit=`expr $NiOc + 2` |
519 |
|
|
#echo "NiOc= $NiOc ; nit= $nit" |
520 |
|
|
sed "$nit i \ ... 2it continue ..." tmp1.txt > tmp2.txt |
521 |
jmc |
1.1 |
rm -f tmp1.txt |
522 |
|
|
echo ' run 1iA: ---------- ' > tmp1.txt |
523 |
jmc |
1.9 |
grep "cg2d_init_res" $dir2/ocnSTDOUT.0000 \ |
524 |
jmc |
1.1 |
| sed 's/.* cg2d_init_res =//' >> tmp1.txt |
525 |
|
|
echo ' run 1iB: ---------- ' >> tmp1.txt |
526 |
jmc |
1.9 |
grep "cg2d_init_res" $dir3/ocnSTDOUT.0000 \ |
527 |
jmc |
1.1 |
| sed 's/.* cg2d_init_res =//' >> tmp1.txt |
528 |
|
|
nl tmp1.txt > tmp1.ttt |
529 |
|
|
nl tmp2.txt > tmp2.ttt |
530 |
|
|
join tmp1.ttt tmp2.ttt | sed 's/[0-9]*//' > ocn.txt |
531 |
|
|
rm -f tmp1.ttt tmp2.ttt tmp1.txt tmp2.txt |
532 |
|
|
echo ' ' ; echo '-- compare cg2d_init_res (Ocean):' |
533 |
|
|
cat ocn.txt |
534 |
|
|
exit |
535 |
|
|
fi |
536 |
|
|
|
537 |
jmc |
1.9 |
if test $ksel = 5 ; then |
538 |
jmc |
1.1 |
rm -f atm.txt |
539 |
|
|
echo ' run 2it: ---------- ' > tmp1.txt |
540 |
jmc |
1.9 |
grep "cg2d_init_res" $dir1/atmSTDOUT.0000 \ |
541 |
jmc |
1.1 |
| sed 's/.* cg2d_init_res =//' >> tmp1.txt |
542 |
jmc |
1.10 |
nit=`expr $NiAt + 2` |
543 |
|
|
sed "$nit i \ ... 2it continue ..." tmp1.txt > tmp2.txt |
544 |
jmc |
1.1 |
rm -f tmp1.txt |
545 |
|
|
echo ' run 1iA: ---------- ' > tmp1.txt |
546 |
jmc |
1.9 |
grep "cg2d_init_res" $dir2/atmSTDOUT.0000 \ |
547 |
jmc |
1.1 |
| sed 's/.* cg2d_init_res =//' >> tmp1.txt |
548 |
|
|
echo ' run 1iB: ---------- ' >> tmp1.txt |
549 |
jmc |
1.9 |
grep "cg2d_init_res" $dir3/atmSTDOUT.0000 \ |
550 |
jmc |
1.1 |
| sed 's/.* cg2d_init_res =//' >> tmp1.txt |
551 |
|
|
nl tmp1.txt > tmp1.ttt |
552 |
|
|
nl tmp2.txt > tmp2.ttt |
553 |
|
|
join tmp1.ttt tmp2.ttt | sed 's/[0-9]*//' > atm.txt |
554 |
|
|
rm -f tmp1.ttt tmp2.ttt tmp1.txt tmp2.txt |
555 |
|
|
echo ' ' ; echo '-- compare cg2d_init_res (Atmos):' |
556 |
|
|
cat atm.txt |
557 |
|
|
exit |
558 |
|
|
fi |
559 |
|
|
|
560 |
|
|
#- compare pickup file: |
561 |
jmc |
1.9 |
if test $ksel = 6 ; then |
562 |
jmc |
1.1 |
echo ' ' ; echo '=== compare Ocn pickups: ==============' |
563 |
jmc |
1.10 |
listP=`( cd $dir1/ocn ; ls pickup*.$noc2c* | sed 's/\..*//g' | uniq )` |
564 |
|
|
for xx in $listP |
565 |
jmc |
1.1 |
do |
566 |
jmc |
1.3 |
dif_tiles $dir1/ocn $dir3/ocn $xx.$noc2c |
567 |
jmc |
1.1 |
done |
568 |
|
|
echo ' ' ; echo '=== compare Atm pickups: ==============' |
569 |
jmc |
1.10 |
listP=`( cd $dir1/atm ; ls pickup*.$nat2c* | sed 's/\..*//g' | uniq )` |
570 |
|
|
for xx in $listP |
571 |
jmc |
1.1 |
do |
572 |
jmc |
1.3 |
dif_tiles $dir1/atm $dir3/atm $xx.$nat2c |
573 |
jmc |
1.1 |
done |
574 |
|
|
exit |
575 |
|
|
fi |
576 |
jmc |
1.8 |
|
577 |
|
|
#- clean-up and reset: |
578 |
jmc |
1.9 |
if test $ksel = 7 ; then |
579 |
jmc |
1.8 |
echo "== clean-up and reset :" |
580 |
jmc |
1.10 |
cd rank_$rnkO |
581 |
|
|
listS=`find . ! -name . -prune -type l -name 'pickup*.'${noc0c}'*'` |
582 |
|
|
if test "x$listS" != x ; then |
583 |
|
|
echo '--> remove pickup*.'$noc0c'* sym-links:' |
584 |
|
|
if [ $prt -ge 2 ] ; then echo " in rank_$rnkO: rm" $listS ; fi |
585 |
|
|
rm -f $listS |
586 |
|
|
fi |
587 |
|
|
cd ../rank_$rnkA |
588 |
|
|
listS=`find . ! -name . -prune -type l -name 'pickup*.'${nat0c}'*'` |
589 |
|
|
if test "x$listS" != x ; then |
590 |
|
|
echo '--> remove pickup*.'$nat0c'* sym-links:' |
591 |
|
|
if [ $prt -ge 2 ] ; then echo " in rank_$rnkA: rm" $listS ; fi |
592 |
|
|
rm -f $listS |
593 |
|
|
fi |
594 |
|
|
cd .. |
595 |
jmc |
1.8 |
#- move back files from temp_tst dir: |
596 |
jmc |
1.9 |
echo '=> restore std data files' |
597 |
jmc |
1.10 |
rm -f rank_{0,$rnkO,$rnkA}/data |
598 |
|
|
rm -f rank_{$rnkO,$rnkA}/data.tst |
599 |
|
|
rm -f rank_{$rnkO,$rnkA}/data.pkg |
600 |
jmc |
1.9 |
mv $tmpDir.0/*Ocean.0001.clog $tmpDir.1/* rank_$rnkO |
601 |
|
|
mv $tmpDir.0/*Atmos.0001.clog $tmpDir.2/* rank_$rnkA |
602 |
|
|
mv $tmpDir.0/std_outp . |
603 |
|
|
mv $tmpDir.0/* rank_0 |
604 |
|
|
rmdir $tmpDir.0 $tmpDir.1 $tmpDir.2 |
605 |
|
|
#echo '--> remove output dir and output files:' |
606 |
|
|
#echo ' rm -rf' $dir1 $dir2 $dir3 |
607 |
|
|
#rm -rf $dir1 $dir2 $dir3 |
608 |
jmc |
1.10 |
rm -f atm.txt ocn.txt |
609 |
jmc |
1.8 |
exit |
610 |
|
|
fi |