--- MITgcm_contrib/jmc_script/grph_StD.m	2008/05/29 23:47:13	1.1
+++ MITgcm_contrib/jmc_script/grph_StD.m	2016/09/10 22:05:35	1.9
@@ -1,20 +1,18 @@
-Nexp=3;
-  Nc=4; nc=Nc*ones(1,Nexp); prefix='stDiag';
- namA(1,1:Nc)='r06a';
- namA(2,1:Nc)='r07a';
- namA(3,1:Nc)='r07b';
+ prefix='dynStD';
+%prefix='iceStD';
+ namA={'g02','b02'};
+%namA={'r17a'};
+ Nexp=size(namA,2);
 %-
 
-% $Header: /home/ubuntu/mnt/e9_copy/MITgcm_contrib/jmc_script/grph_StD.m,v 1.1 2008/05/29 23:47:13 jmc Exp $
+% $Header: /home/ubuntu/mnt/e9_copy/MITgcm_contrib/jmc_script/grph_StD.m,v 1.9 2016/09/10 22:05:35 jmc Exp $
 % $Name:  $
 
-
 nItMx=1e10*ones(1,Nexp); %nItMx(3)=11;
-%nItMx=360*ones(1,Nexp);
-namLg=namA ; for n=1:Nexp, namLg(n,find(namLg(n,:)=='_'))='-'; end
+%nItMx=2400*ones(1,Nexp);
+namLg=namA ; namLg=strrep(namLg,'_','\_');
+undef=123456.7;
 %-----------
-%- ngEn = Nb of Energy plot: = 2 or = 4  ;
-ngEn=2;
 %- test if the variable krd is define :
 if size(who('krd'),1) > 0,
  fprintf('krd is defined and = %i \n',krd);
@@ -24,15 +22,16 @@
 if krd > 0,
 %- define list of fields to read in:
 %listV={'Eta','U','V','W','T','S','DETADT2','RELHUM','Phi'};
-%listV={'Eta','U','V','W','T','S','CONVADJ','DETADT2'};
+%listV={'Eta','W','T','S','CONVADJ','DETADT2'};
+%listV={'Eta','UE_VEL_C','VN_VEL_C','W','T','DETADT2','Phi'};
 %- or take all them:
-clear listV ; listV='all_flds';
+ clear listV ; listV='all_flds';
 %-----------
 
 %- start to read the longest record:
   n=1; rf=-1; if strcmp(char(listV),'all_flds'), rf=0; end
   [ntA(n),rList,tim,vv1,listV] = ...
-    read_StD(prefix,namA(n,1:nc(n)),listV);
+    read_StD(prefix,namA(n),listV);
   nIt=ntA(n); nk=size(vv1,1); nRg=size(vv1,3);
 %- set global dims: & load vvA --> vvB
   nbV=size(listV,2);
@@ -42,7 +41,7 @@
 %----
  for n=2:Nexp,
   [ntA(n),rList,tim,vv1,listV] = ...
-    read_StD(prefix,namA(n,1:nc(n)),listV);
+    read_StD(prefix,namA(n),listV);
   nIt=ntA(n); nk=size(vv1,1); nRg=size(vv1,3);
   if (nrec < nIt),
     fprintf('\n');
@@ -58,7 +57,7 @@
    fprintf('save to "sav_StD.mat" file ...');
    save('sav_StD.mat','vvA','tiA','ntA','rList','listV');
    fprintf(' done\n')
- end 
+ end
 elseif krd < 0,
  fprintf('load from "sav_StD.mat" file ...');
  load sav_StD
@@ -66,13 +65,14 @@
 end
 if krd ~= 0,
  ttA=squeeze(tiA(:,2,:));
- ttA=ttA/86400; titT='days'; ttA=ttA/30 ; titT='month'; ttA=ttA/12 ; titT='year';
+ ttA=ttA/3600; titT='hrs';  ttA=ttA/24; titT='days';
+ ttA=ttA/30 ; titT='month'; ttA=ttA/12 ; titT='year';
 end
 %=========================================================
 
 ttax1=0 ; ttax2=0 ; ttay=zeros(nbV,2);
 %-- fixed time axis bound :
-% ttax1=3; ttax2=3.3;
+% ttax1=15.; ttax2=20.;
 %-- fixed Y axis bound :
 % ttay(4,:)=[0 0.6];
 %-----------
@@ -83,16 +83,17 @@
 %--
 
 list_on=zeros(1,nbV);
-nbG=8;
+nbG=18;
 nbG=min(nbG,nbV); list_on(1:nbG)=1 ;
+%if nbG < nbV, list_on=0; list_on(nbG:nbV)=1; end %- to get 2nd set of plots
 %list_on(1:6)=[1 1 1 1 1 1];
 
 isA=ones(1,Nexp); ieA=ntA;
-%- limit the length : for search of isA <->1500y: find(ttA(:,2) == 1500) 
+%- limit the length : for search of isA <->1500y: find(ttA(:,2) == 1500)
 %isA=isA*31 ; % drop the 1rst mnth (1 Monitor/d)
-%isA=isA*36 ; % drop the 1rst year (1 Monitor/10d)
+isA=isA*2 ; % drop the 1rst mnth (1 Monitor/30d)
 %isA(1)=31 ; isA(2)=4 ; % drop the 1rst mnth
-%ieA(:)=360; isA(:)=1;
+%ieA(:)=240; %isA(:)=1;
 
 linA(1,:)='k-'; % ieA(1)=60 ; % ieA(1)=1152 ;
 linA(2,:)='b-';
@@ -102,30 +103,39 @@
 linA(6,:)='c-';
 
 ieA=min(ieA,nItMx);
-%titall='AIM , Cubic-G (32x32) , cpl-FM Forcing' ; 
-titall='Global Ocean, Cubic-G (32x32) , NCEP Forc (2)' ;
+%titall='AIM , Cubic-G (32x32) , cpl-FM Forcing' ;
+titall='Global Ocean, Cubic-G (32x32) , CORE Forc (2)' ;
+%titall='Dyncore test-case 5 (cs-32)' ;
 
 %=========================================================
- 
-for ng=1:nbV,
+ng=0; fxb=100; fyb=60; fdx=100; fdy=40; fsc=1.;
+%fyb=-360; fxb=-2600; fdy=60; fsc=1.5;
+
+for jv=1:nbV,
 %-------------------
- flag=list_on(ng); kl=0;
- vv1=vvA(:,:,:,:,ng,:); namV=char(listV(ng));
+ flag=list_on(jv); kl=0;
+ vv1=vvA(:,:,:,:,jv,:); namV=char(listV(jv));
  titv=strrep(namV,'_','\_');
 %if strcmp(namV,'Eta'), vv1=vv1/100; titv='Eta [mb]'; end
-%if strcmp(namV,'T'), kl=1; end
-%if ng == 1, flag=2*list_on(1) ; end
+%if strcmp(namV,'T'), kl=1; end		% <-- to get surf.Temp
  if kl > 0, titv=[titv,'\_',int2str(kl)];
    fprintf([' var= ',namV,' at level k= %i \n'],kl);
  end
 
  if flag == 1
 %--
-  figure(ng); set(ng,'position',[100+100*ng 60+40*ng 500 700]);clf;
-% if ng == 2, var=squeeze(vv1(2,:,1,:,:)); end % to get surf.Temp
-  var=squeeze(vv1(1+kl,:,1,:,:));
-  dd=squeeze(max(var)-min(var)); av=squeeze(mean(var));
-   if Nexp == 1, av=av'; dd=dd'; end ;
+  ng=ng+1;
+%- reset "ng" to jv for fix fig number (independent of which one is in list_on):
+  %ng=jv;
+  figure(ng); set(ng,'position',[fxb+fdx*ng fyb+fdy*ng [500 700]*fsc]);clf;
+  var=squeeze(vv1(1+kl,:,1,:,:)); dd=zeros(5,Nexp); av=zeros(5,Nexp);
+  for n=1:Nexp,
+   tmp=var(isA(n):ieA(n),:,n); [I]=find(tmp(:,1)==undef); tmp(I,:)=0;
+   av(:,n)=sum(tmp);
+   if length(I) < size(tmp,1), av(:,n)=av(:,n)/(size(tmp,1)-length(I)); end
+   tmp(I,:)=NaN; dd(:,n)=max(tmp)-min(tmp);
+  end
+  var(find(var==undef))=NaN;
   for nv=1:4,
     subplot(410+nv); ttmn=' Mx-mn:'; ttav=' Av:';
     for n=1:Nexp,
@@ -134,16 +144,14 @@
       ttmn=sprintf([ttmn,' %2.1e ;'],dd(nv,n));
       ttav=sprintf([ttav,' %3.2e ;'],av(nv,n));
     end ; hold off ;
-    if ttax1 < ttax2, AA=axis; axis([ttax1 ttax2 AA(3:4)]); end; 
     AA=axis ; dAA=AA(4)-AA(3);
     if AA(3)*AA(4) <= 0, AA(3)=min(AA(3),-dAA/10); AA(4)=max(AA(4),dAA/10); end
+    if ttax1 < ttax2, AA(1)=ttax1; AA(2)=ttax2; end;
     axis(AA); grid ;
-   %AA=axis; text(AA(1)*.9+AA(2)*.1,AA(3)*0.1+AA(4)*0.9,ttmn);
     if nv == 1, title(['Avr ',titv,'  ',ttmn]); end
     if nv == 2, title(['Std-Dev ',titv,'  ',ttav]); end
-    if nv == 3, title(['min ',titv,'  ',ttav]); legend(namLg(1:Nexp,:),0); end
+    if nv == 3, title(['min ',titv,'  ',ttav]); legend(namLg,0); end
     if nv == 4, title(['Max ',titv,'  ',ttav]); end
-   %if nv == 2, title(['Del-2 ',titv,'  ',ttav]); end
   end ; xlabel(titT);
 %--
   axes('position',[.01,.01,.99,.99],'Visible','off');
@@ -151,10 +159,10 @@
   set(T,'HorizontalAlignment','center','FontSize',12);
   Td=text(0.99,0.01,date);
   set(Td,'HorizontalAlignment','right','FontSize',6);
-%--- 
+%---
  end
 
-%------------------- 
+%-------------------
 end
 
 %=========================================================