/[MITgcm]/MITgcm_contrib/jmc_script/README
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revision 1.10 by jmc, Mon May 11 12:32:37 2009 UTC revision 1.19 by jmc, Mon Nov 9 17:36:04 2020 UTC
# Line 1  Line 1 
1  Some basic scripts are gather here.  Some basic scripts are gather here.
2    
3  a) the restart test : "2+2=4"  a) the restart test: "2+2=4"
4    
5  script: tst_2+2  script: tst_2+2
6  - to use in a run dir. after a successful "testreport"  - to use in a run dir. after a successful "testreport"
# Line 16  script: do_test_2+2 Line 16  script: do_test_2+2
16    and can only be used after a successful "testreport"    and can only be used after a successful "testreport"
17  - do_test_2+2 -help -> print "usage"  - do_test_2+2 -help -> print "usage"
18    
19  NOTE: scripts "tst_2+2" & "do_test_2+2" have been moved (Dec 25, 2007)  NOTE: scripts "tst_2+2" & "do_test_2+2" have been moved (Dec 25, 2007)
20   to: MITgcm/tools   to: MITgcm/tools/
21    
22  script: tst_2+2_cpl  script: tst_2+2_cpl
23   = version of tst_2+2 adapted for coupled set-up (verification/cpl_aim+ocn)   = version of tst_2+2 adapted for coupled set-up (verification/cpl_aim+ocn)
# Line 44  matlab-script: plot_StD.m (uses read_StD Line 44  matlab-script: plot_StD.m (uses read_StD
44    
45  d) script: rn_pickup  d) script: rn_pickup
46  - Rename 'pickup*.ckpt[A,B].*' files to 'pickup*.[10-digits-iter].*'  - Rename 'pickup*.ckpt[A,B].*' files to 'pickup*.[10-digits-iter].*'
47    with several selection options    with several selection options.
48  - rn_pickup (no argument) -> print "usage"  - rn_pickup (no argument) -> print "usage"
49    
50  e) script: mk_mkfile  e) script: mk_mkfile
51  - run genmake2 with the same options as when "Makefile" was generated  - run genmake2 with the same options as when "Makefile" was generated
52   (needs an existing previous "Makefile") ; this replaces "make makefile".   (needs an existing previous "Makefile") ; this replaces "make makefile".
53   in addition, link *_mpi files from the MODS directory when -mpi was   in addition, link *_mpi files from the MODS directory when -mpi was
54   used to generate the previous Makefile.   used to generate the previous Makefile.
55    
56  f) script: derive_other_types  f) script: derive_other_types
57    from 1 src file, derive other type (R4,RS,RL,RS) version. For now, can    from 1 src file, derive other type (R4,RS,RL,RS) version. For now, can
58    only be applied to the 4 src files: "mdsio_pass_r{4,8}tor{l,s}.F"    only be applied to the 4 src files: "mdsio_pass_r{4,8}tor{l,s}.F"
59    
60    g) script: mk_options_list
61      generate list of CPP Options used in Fortran source files
62    
63    ----------------------------------------------------------------------
64    shell & matlab scripts to process MONITOR output from STDOUT files
65     and make simple time-serie plots:
66    --------------------
67    a) shell script: select_MON
68     get all MONITOR output from a single file and split into many
69     single-variable output files (easier to load and plot)
70    
71    b) shell scripts: do_extract_MON & extract_MON
72     collect into a single file all MONITOR output from consecutive
73     STDOUT output files (from a single experiment with one of more restart)
74    
75    c) matlab script: grph_MON.m
76     plot MONITOR time-serie of one or more experiment (with lines of different
77     color). Note: experiment with larger number of records needs to come first.
78    Uses: read_MON.m
79     to load-in single-variable output files (--> many files per experiment)
80    and/or: readnc_MON.m
81     to load-in netcdf (MNC) MONITOR output files
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