1 |
Some basic scripts are gather here. |
Some basic scripts are gather here. |
2 |
They are not specially design to be general and obviously |
|
3 |
need to be modified/customized for each application. |
a) the restart test : "2+2=4" |
4 |
|
|
5 |
a) the restart test : "1+1=2" |
script: tst_2+2 |
6 |
script: tst1+1 |
- to use in a run dir. after a successful "testreport" |
7 |
call 2 short scripts: rnp & add0upto10c |
- input argument: '0','1','2','3','4' or 'All': |
8 |
|
proceed step by step or all steps at once |
9 |
* no input argument but few comments within the file tst1+1 |
- tst_2+2 (no argument) -> print "usage" |
10 |
(needs to be edited and modify). |
- know problems: specific restart procedure (with fizhi pkg or offline pkg) |
11 |
* an example of data.tst file is provided |
not yet implemented |
12 |
Note: the script is sensitive to space and upper-case / lower |
|
13 |
case characters regarding nIter0 line and nTimeSteps line. |
script: do_test_2+2 |
14 |
|
- call restart test "tst_2+2" multiple times, in every test experiment. |
15 |
|
- needs to be in MITgcm/verification (with a copy of tst_2+2i script) |
16 |
|
and can only be used after a successful "testreport" |
17 |
|
- do_test_2+2 -help -> print "usage" |
18 |
|
|
19 |
|
NOTE: scripts "tst_2+2" & "do_test_2+2" have been moved (Dec 25, 2007) |
20 |
|
to: MITgcm/tools |
21 |
|
|
22 |
|
script: tst_2+2_cpl |
23 |
|
= version of tst_2+2 adapted for coupled set-up (verification/cpl_aim+ocn) |
24 |
|
|
25 |
b) PBS-batch script that re-submit itself (loop). |
b) PBS-batch script that re-submit itself (loop). |
26 |
script: runScript |
script: runScript |
|
call 2 short scripts: add0upto3c & add0upto10c |
|
27 |
|
|
28 |
* used (and tested) on myrinet-3 cluster. |
- used (and tested) on myrinet-3 cluster. |
29 |
* suffer from a lack of meaningful comments. |
- suffer from a lack of meaningful comments. |
30 |
|
- not specially design to be general and obviously |
31 |
|
need to be modified/customized for each set-up. |
32 |
|
|
33 |
c) A short script to split the ASCII Diagnostics-Stats output file |
c) A short script to split the ASCII Diagnostics-Stats output file |
34 |
into separated files (one per field) that are easy to read/load |
into separated files (one per field) that are easy to read/load |
35 |
(e.g., in matlab, just use "load" command) |
(e.g., in matlab, just use "load" command) |
36 |
script: extract_StD |
script: extract_StD |
37 |
no known dependency |
no known dependency |
38 |
+ A matlab script to load in 1 array all the separated files: |
+ A matlab script to load in 1 array all the separated files: |
39 |
matlab-script: read_StD |
matlab-script: read_StD.m |
40 |
no known dependency |
no known dependency |
41 |
|
+ 2 example scripts to make simple plots from Stat-Diags output: |
42 |
|
matlab-script: grph_StD.m (uses read_StD.m) |
43 |
|
matlab-script: plot_StD.m (uses read_StD.m, c_levs.m) |
44 |
|
|
45 |
|
d) script: rn_pickup |
46 |
|
- Rename 'pickup*.ckpt[A,B].*' files to 'pickup*.[10-digits-iter].*' |
47 |
|
with several selection options |
48 |
|
- rn_pickup (no argument) -> print "usage" |
49 |
|
|
50 |
|
e) script: mk_mkfile |
51 |
|
- run genmake2 with the same options as when "Makefile" was generated |
52 |
|
(needs an existing previous "Makefile") ; this replaces "make makefile". |
53 |
|
in addition, link *_mpi files from the MODS directory when -mpi was |
54 |
|
used to generate the previous Makefile. |