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Some basic scripts are gather here. |
Some basic scripts are gather here. |
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They are not specially design to be general and obviously |
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need to be modified/customized for each application. |
a) the restart test: "2+2=4" |
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a) the restart test : "1+1=2" |
script: tst_2+2 |
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script: tst1+1 |
- to use in a run dir. after a successful "testreport" |
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call 2 short scripts: rnp & add0upto10c |
- input argument: '0','1','2','3','4' or 'All': |
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proceed step by step or all steps at once |
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* no input argument but few comments within the file tst1+1 |
- tst_2+2 (no argument) -> print "usage" |
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(needs to be edited and modify). |
- know problems: specific restart procedure (with fizhi pkg or offline pkg) |
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* an example of data.tst file is provided |
not yet implemented |
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Note: the script is sensitive to space and upper-case / lower |
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case characters regarding nIter0 line and nTimeSteps line. |
script: do_test_2+2 |
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- call restart test "tst_2+2" multiple times, in every test experiment. |
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- needs to be in MITgcm/verification (with a copy of tst_2+2i script) |
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and can only be used after a successful "testreport" |
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- do_test_2+2 -help -> print "usage" |
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NOTE: scripts "tst_2+2" & "do_test_2+2" have been moved (Dec 25, 2007) |
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to: MITgcm/tools/ |
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script: tst_2+2_cpl |
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= version of tst_2+2 adapted for coupled set-up (e.g., verification/cpl_aim+ocn) |
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b) PBS-batch script that re-submit itself (loop). |
b) PBS-batch script that re-submit itself (loop). |
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script: runScript |
script: runScript |
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call 2 short scripts: add0upto3c & add0upto10c |
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* used (and tested) on myrinet-3 cluster. |
- used (and tested) on myrinet-3 cluster. |
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* suffer from a lack of meaningful comments. |
- suffer from a lack of meaningful comments. |
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- not specially design to be general and obviously |
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need to be modified/customized for each set-up. |
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c) A short script to split the ASCII Diagnostics-Stats output file |
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into separated files (one per field) that are easy to read/load |
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(e.g., in matlab, just use "load" command) |
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script: extract_StD |
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no known dependency |
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+ A matlab script to load in 1 array all the separated files: |
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matlab-script: read_StD.m |
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no known dependency |
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+ 2 example scripts to make simple plots from Stat-Diags output: |
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matlab-script: grph_StD.m (uses read_StD.m) |
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matlab-script: plot_StD.m (uses read_StD.m, c_levs.m) |
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d) script: rn_pickup |
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- Rename 'pickup*.ckpt[A,B].*' files to 'pickup*.[10-digits-iter].*' |
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with several selection options. |
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- rn_pickup (no argument) -> print "usage" |
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e) script: mk_mkfile |
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- run genmake2 with the same options as when "Makefile" was generated |
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(needs an existing previous "Makefile") ; this replaces "make makefile". |
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in addition, link *_mpi files from the MODS directory when -mpi was |
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used to generate the previous Makefile. |
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f) script: derive_other_types |
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from 1 src file, derive other type (R4,RS,RL,RS) version. For now, can |
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only be applied to the 4 src files: "mdsio_pass_r{4,8}tor{l,s}.F" |
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g) script: mk_options_list |
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generate list of CPP Options used in Fortran source files |
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h) script: comp_res |
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to compare MONITOR output from 2 STDOUT files (outside of testreport). |
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Note: use executable "cmpnum" compiled from tiny fortran code: cmpnum.f |
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i) script: mod |
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to perform automatic substitution (useful to maintain src code) using |
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command "sed" and set of rules from file (default rule file: "mod.sed") |
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---------------------------------------------------------------------- |
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shell & matlab scripts to process MONITOR output from STDOUT files |
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and make simple time-serie plots: |
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-------------------- |
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a) shell script: select_MON |
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get all MONITOR output from a single file and split into many |
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single-variable output files (easier to load and plot) |
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b) shell scripts: do_extract_MON & extract_MON |
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collect into a single file all MONITOR output from consecutive |
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STDOUT output files (from a single experiment with one of more restart) |
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c) matlab script: grph_MON.m |
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plot MONITOR time-serie of one or more experiment (with lines of different |
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color). Note: experiment with larger number of records needs to come first. |
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Uses: read_MON.m |
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to load-in single-variable output files (--> many files per experiment) |
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and/or: readnc_MON.m |
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to load-in netcdf (MNC) MONITOR output files |
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