| 1 |
dimitri |
1.1 |
#!/bin/sh |
| 2 |
dimitri |
1.2 |
#PBS -l ncpus=220 |
| 3 |
dimitri |
1.1 |
#PBS -l walltime=30:00:00 |
| 4 |
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#PBS -j oe |
| 5 |
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#PBS -q special |
| 6 |
dimitri |
1.2 |
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| 7 |
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setenv MPI_USE_XPMEM |
| 8 |
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setenv MPI_DSM_MUSTRUN |
| 9 |
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setenv MPI_DSM_CPULIST 3-220 |
| 10 |
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setenv MALLOC_MMAP_MAX 0 |
| 11 |
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setenv MALLOC_TRIM_THRESHOLD_ -1 |
| 12 |
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setenv KMP_STACKSIZE 512000000 |
| 13 |
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setenv KMP_BLOCKTIME 1000000 |
| 14 |
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setenv KMP_LIBRARY turnaround |
| 15 |
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limit stacksize unlimited |
| 16 |
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| 17 |
dimitri |
1.1 |
cd /nobackup1/menemenl/cube/MITgcm/verification/global_ocean.cs32x15/run |
| 18 |
dimitri |
1.2 |
\cp ../input/* . |
| 19 |
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\cp ../../../../MITgcm_contrib/high_res_cube/input/* . |
| 20 |
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| 21 |
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\cp data.pkg_hr data.pkg |
| 22 |
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\cp data.seaice_hr data.seaice |
| 23 |
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\ln -sf ../../../../run_template/tile00* . |
| 24 |
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\ln -sf ../../../../run_template/LEV* . |
| 25 |
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\ln -sf ../../../../run_template/heff_file . |
| 26 |
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\ln -sf ../../../../run_template/ETOPO2_510x6x510_ver3b_filled.bin . |
| 27 |
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cp ../build/mitgcmuv . |
| 28 |
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| 29 |
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\cp data_hr data |
| 30 |
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\cp data.exf_0 data.exf |
| 31 |
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mpirun -np 216 ./mitgcmuv |
| 32 |
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mkdir out.0 |
| 33 |
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\mv STDOUT.0000 *.data pickup*.meta job_altix.* out.0 |
| 34 |
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\cp data* job_altix out.0 |
| 35 |
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\rm STD* *.meta |
| 36 |
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| 37 |
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\cp data_hr92 data |
| 38 |
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\cp data.exf_hr92 data.exf |
| 39 |
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\ln -sf out.0/pickup.0000000864.data pickup.0000000216.data |
| 40 |
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\ln -sf out.0/pickup_seaice.0000000864.data pickup_seaice.0000000216.data |
| 41 |
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mpirun -np 216 ./mitgcmuv |
| 42 |
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mkdir out.1992 |
| 43 |
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\mv STDOUT.0000 *.data pickup*.meta job_altix.* out.1992 |
| 44 |
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\cp data* job_altix out.1992 |
| 45 |
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\rm STD* *.meta |
| 46 |
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| 47 |
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\cp data_hr93 data |
| 48 |
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\cp data.exf_hr93 data.exf |
| 49 |
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\ln -sf out.1992/pickup*.0*.data . |
| 50 |
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mpirun -np 216 dplace ./mitgcmuv |
| 51 |
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mkdir out.1993 |
| 52 |
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\mv STDOUT.0000 *.data pickup*.meta job_altix.* out.1993 |
| 53 |
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\cp data* job_altix out.1993 |
| 54 |
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\rm STD* *.meta |
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