Contents of /MITgcm_contrib/high_res_cube/input/job_altix01

#!/bin/csh
#PBS -l ncpus=220
#PBS -l walltime=30:00:00
#PBS -j oe
#PBS -q special

#====>>> REPLACE FOLLOWING LINE WITH CORRECT RUNTIME DIRECTORY <<<====
cd /nobackup1/menemenl/cube/MITgcm/verification/global_ocean.cs32x15/run

setenv MPI_USE_XPMEM
setenv MPI_DSM_CPULIST 4-219
setenv MALLOC_MMAP_MAX 0
setenv KMP_STACKSIZE 512000000
setenv KMP_BLOCKTIME 1000000
setenv KMP_LIBRARY turnaround
limit stacksize unlimited

\cp data.pkg_hr data.pkg
\cp data.seaice_hr data.seaice
\cp data.exf_clim_hr data.exf_clim
\ln -sf /nobackup1/menemenl/cube/run_template/* .
cp ../build/mitgcmuv .

./modpickup 01

\cp data_hr01 data
\cp data.exf_hr01 data.exf
\ln -sf out.2000/pickup*.0*.data .
mpirun -np 216 dplace ./mitgcmuv
mkdir out.2001
\mv STDOUT.0000 *.data pickup*.meta job_altix01.* out.2001
\cp data* job_altix01 out.2001
\rm STD* *.meta

#====>>> REMOVE FOLLOWING LINE TO STOP CHAIN <<<====
qsub job_altix02
1	#!/bin/csh
2	#PBS -l ncpus=220
3	#PBS -l walltime=30:00:00
4	#PBS -j oe
5	#PBS -q special
6
7	#====>>> REPLACE FOLLOWING LINE WITH CORRECT RUNTIME DIRECTORY <<<====
8	cd /nobackup1/menemenl/cube/MITgcm/verification/global_ocean.cs32x15/run
9
10	setenv MPI_USE_XPMEM
11	setenv MPI_DSM_CPULIST 4-219
12	setenv MALLOC_MMAP_MAX 0
13	setenv KMP_STACKSIZE 512000000
14	setenv KMP_BLOCKTIME 1000000
15	setenv KMP_LIBRARY turnaround
16	limit stacksize unlimited
17
18	\cp data.pkg_hr data.pkg
19	\cp data.seaice_hr data.seaice
20	\cp data.exf_clim_hr data.exf_clim
21	\ln -sf /nobackup1/menemenl/cube/run_template/* .
22	cp ../build/mitgcmuv .
23
24	./modpickup 01
25
26	\cp data_hr01 data
27	\cp data.exf_hr01 data.exf
28	\ln -sf out.2000/pickup.0.data .
29	mpirun -np 216 dplace ./mitgcmuv
30	mkdir out.2001
31	\mv STDOUT.0000 .data pickup.meta job_altix01.* out.2001
32	\cp data* job_altix01 out.2001
33	\rm STD* *.meta
34
35	#====>>> REMOVE FOLLOWING LINE TO STOP CHAIN <<<====
36	qsub job_altix02