Annotation of /MITgcm_contrib/high_res_cube/input/job_altix01

#!/bin/csh
#PBS -l ncpus=220
#PBS -l walltime=30:00:00
#PBS -j oe
#PBS -q special
#PBS -l ignore_ded=1

#====>>> REPLACE FOLLOWING LINE WITH CORRECT RUNTIME DIRECTORY <<<====
cd /nobackup1/menemenl/cube/MITgcm/verification/global_ocean.cs32x15/run

setenv MPI_USE_XPMEM
setenv MPI_DSM_CPULIST 4-219
setenv MALLOC_MMAP_MAX 0
setenv KMP_STACKSIZE 512000000
setenv KMP_BLOCKTIME 1000000
setenv KMP_LIBRARY turnaround
limit stacksize unlimited

\cp data.pkg_hr data.pkg
\cp data.seaice_hr data.seaice
\cp data.exf_clim_hr data.exf_clim
\ln -sf /nobackup1/menemenl/cube/run_template/* .
cp ../build/mitgcmuv .

./modpickup 01

\cp data_hr01 data
\cp data.exf_hr01 data.exf
\ln -sf out.2000/pickup*.0*.data .
mpirun -np 216 dplace ./mitgcmuv
mkdir out.2001
\mv STDOUT.0000 *.data pickup*.meta job_altix01.* out.2001
\cp data* job_altix01 out.2001
\rm STD* *.meta

#====>>> REMOVE FOLLOWING LINE TO STOP CHAIN <<<====
qsub job_altix02
1	dimitri	1.1	#!/bin/csh
2			#PBS -l ncpus=220
3			#PBS -l walltime=30:00:00
4			#PBS -j oe
5			#PBS -q special
6	dimitri	1.4	#PBS -l ignore_ded=1
7	dimitri	1.1
8			#====>>> REPLACE FOLLOWING LINE WITH CORRECT RUNTIME DIRECTORY <<<====
9			cd /nobackup1/menemenl/cube/MITgcm/verification/global_ocean.cs32x15/run
10
11			setenv MPI_USE_XPMEM
12			setenv MPI_DSM_CPULIST 4-219
13			setenv MALLOC_MMAP_MAX 0
14			setenv KMP_STACKSIZE 512000000
15			setenv KMP_BLOCKTIME 1000000
16			setenv KMP_LIBRARY turnaround
17			limit stacksize unlimited
18
19			\cp data.pkg_hr data.pkg
20			\cp data.seaice_hr data.seaice
21			\cp data.exf_clim_hr data.exf_clim
22			\ln -sf /nobackup1/menemenl/cube/run_template/* .
23			cp ../build/mitgcmuv .
24
25	dimitri	1.3	./modpickup 01
26
27	dimitri	1.1	\cp data_hr01 data
28			\cp data.exf_hr01 data.exf
29			\ln -sf out.2000/pickup.0.data .
30			mpirun -np 216 dplace ./mitgcmuv
31			mkdir out.2001
32			\mv STDOUT.0000 .data pickup.meta job_altix01.* out.2001
33			\cp data* job_altix01 out.2001
34			\rm STD* *.meta
35
36			#====>>> REMOVE FOLLOWING LINE TO STOP CHAIN <<<====
37			qsub job_altix02