/[MITgcm]/MITgcm_contrib/high_res_cube/cube92_latest/README.cs510
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revision 1.1 by dimitri, Wed Jul 31 02:53:08 2019 UTC revision 1.2 by dimitri, Wed Jul 31 19:47:11 2019 UTC
# Line 1  Line 1 
1  # get code from anonymous CVS server  # Build executable for cube92 with latest MITgcm code on pleiades
2  cvs co MITgcm_contrib/high_res_cube/cube92   cvs co MITgcm_contrib/high_res_cube/cube92
3  cvs co -r checkpoint62i MITgcm_code   git clone https://github.com/MITgcm/MITgcm.git
4     cd MITgcm
5  # build executable on pleiades   mkdir build run1 run2
6  cd MITgcm   cd build
7  mkdir build run1 run2   module purge
8  cd build   module load comp-intel/2016.2.181 mpi-sgi/mpt.2.14r19 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
9  module purge   ../tools/genmake2 -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas \
10  module load comp-intel/2016.2.181 mpi-sgi/mpt.2.14r19 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt      -mo ../../MITgcm_contrib/high_res_cube/cube92_latest/code
11  ../tools/genmake2 -mo ../../MITgcm_contrib/high_res_cube/cube92/code -of \   make depend
12     ../../MITgcm_contrib/high_res_cube/cube92/code/linux_amd64_ifort+mpi_ice_nas -mpi   make -j 16
 make depend  
 make -j 16  
13    
14  # integrate 1992-2008 model on pleiades  # integrate 1992-2008 model on pleiades
15  cd ../run1   cd ../run1
16  cp ../../MITgcm_contrib/high_res_cube/cube92/input/* .   cp ../../MITgcm_contrib/high_res_cube/cube92/input/* .
17  ln -sf /nobackup/hzhang1/cdata.exf_2009-2019s510/run_template/*cube78 .   ln -sf /nobackup/hzhang1/cdata.exf_2009-2019s510/run_template/*cube78 .
18  ln -sf /nobackup/hzhang1/cs510/run_template/tile* .   ln -sf /nobackup/hzhang1/cs510/run_template/tile* .
19  ln -sf /nobackup/hzhang1/cs510/run_template/GEBCO* .   ln -sf /nobackup/hzhang1/cs510/run_template/GEBCO* .
20  ln -sf /nobackup/hzhang1/cs510/run_template/runoff* .   ln -sf /nobackup/hzhang1/cs510/run_template/runoff* .
21  ln -sf /nobackup/hzhang1/cs510/run_template/DIFFKR* .   ln -sf /nobackup/hzhang1/cs510/run_template/DIFFKR* .
22  mv pickup.0000000216.cube78 pickup.0000000216   mv pickup.0000000216.cube78 pickup.0000000216
23  mv pickup.0000000216.meta.cube78 pickup.0000000216.meta   mv pickup.0000000216.meta.cube78 pickup.0000000216.meta
24  mv pickup_seaice.0000000216.cube78 pickup_seaice.0000000216   mv pickup_seaice.0000000216.cube78 pickup_seaice.0000000216
25  mv pickup_seaice.0000000216.meta.cube78 pickup_seaice.0000000216.meta         mv pickup_seaice.0000000216.meta.cube78 pickup_seaice.0000000216.meta      
26  ln -sf data.exf_1992-2008 data.exf   ln -sf data.exf_1992-2008 data.exf
27  ln -sf ../build/mitgcmuv .   ln -sf ../build/mitgcmuv .
28  qsub run_cube92   qsub run_cube92
29    
30  # integrate 2009-2019 model on pleiades  # integrate 2009-2019 model on pleiades
31  cd ../run2   cd ../run2
32  cp ../../MITgcm_contrib/high_res_cube/cube92/input/* .   cp ../../MITgcm_contrib/high_res_cube/cube92/input/* .
33  ln -sf /nobackup/hzhang1/cs510/run_template/pic*447120.*ta .   ln -sf /nobackup/hzhang1/cs510/run_template/pic*447120.*ta .
34  ln -sf /nobackup/hzhang1/cs510/run_template/tile* .   ln -sf /nobackup/hzhang1/cs510/run_template/tile* .
35  ln -sf /nobackup/hzhang1/cs510/run_template/GEBCO* .   ln -sf /nobackup/hzhang1/cs510/run_template/GEBCO* .
36  ln -sf /nobackup/hzhang1/cs510/run_template/runoff* .   ln -sf /nobackup/hzhang1/cs510/run_template/runoff* .
37  ln -sf /nobackup/hzhang1/cs510/run_template/DIFFKR* .   ln -sf /nobackup/hzhang1/cs510/run_template/DIFFKR* .
38  ln -sf /nobackup/hzhang1/forcing/jra55_do .   ln -sf /nobackup/hzhang1/forcing/jra55_do .
39  ln -sf /nobackup/hzhang1/forcing/jra55 .   ln -sf /nobackup/hzhang1/forcing/jra55 .
40  ln -sf data.exf_2009-2019 data.exf   ln -sf data.exf_2009-2019 data.exf
41  ln -sf data_2009-2019 data   ln -sf data_2009-2019 data
42  ln -sf ../build/mitgcmuv .   ln -sf ../build/mitgcmuv .
43  qsub run_ivy   qsub run_ivy
   
 ==== solution history ===  
 solution is piece-wise due to availability of forcing dataset  
         1992-2008  optimized blended forcing      
                    with data.exf_1992-2008  
                         cube78_forcing/ for 1992-2002  
                         Ecmwf/          for 2003-2008  
                         archived at  
                                 lfe:/u/hzhang1/From_PFE/forcing/cube78_forcing  
                                 lfe:/u/hzhang1/From_PFE/forcing/ecmwf  
                    1992/01/03 pickup @  
                                 pfe:/nobackup/hzhang1/cs510/run_template/pic*216.cube78  
         2009-2017  jra25 and GPCP Forcing (overwritten by below)  
         2009-2019  jra55 and jra55do rain (overwrite above)  
                    with data.exf_2009-2019  
                         stored at  
                                 pfe:/nobackup/hzhang1/forcing/jra55  
                                 pfe:/nobackup/hzhang1/forcing/jra55_do  
                    2009/01/01 pickup @  
                                 pfe:/nobackup/hzhang1/cs510/run_template/pic*.0000447120.*ta  
   
 output model-grid:  
         lfe:/u/hzhang1/cubes/cube92  
 output interp to lat-lon grid:  
         ftp://ecco.jpl.nasa.gov/ECCO2/cube92_latlon_quart_90S90N/  
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