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mkdir cube92 |
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cd cube92 |
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# get code from anonymous CVS server |
# get code from anonymous CVS server |
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cvs co MITgcm_contrib/high_res_cube/cube92 |
cvs co MITgcm_contrib/high_res_cube/cube92 |
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cvs co -r checkpoint62h MITgcm_code |
cvs co -r checkpoint62i MITgcm_code |
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cd MITgcm |
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mkdir build run |
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# build executable |
# build executable on pleiades |
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cd MITgcm |
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mkdir build run1 run2 |
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cd build |
cd build |
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../tools/genmake2 -mo ../../MITgcm_contrib/high_res_cube/cube92/code -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas |
module purge |
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module load comp-intel/2016.2.181 mpi-sgi/mpt.2.14r19 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt |
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../tools/genmake2 -mo ../../MITgcm_contrib/high_res_cube/cube92/code -of \ |
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../../MITgcm_contrib/high_res_cube/cube92/code/linux_amd64_ifort+mpi_ice_nas -mpi |
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make depend |
make depend |
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make -j 16 |
make -j 16 |
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# integrate model |
# integrate 1992-2008 model on pleiades |
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cd ../run |
cd ../run1 |
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cp ../../MITgcm_contrib/high_res_cube/cube92/input/* . |
cp ../../MITgcm_contrib/high_res_cube/cube92/input/* . |
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ln -sf /nobackup/hzhang1/cs510/run_template/*cube78 . |
ln -sf /nobackup/hzhang1/cdata.exf_2009-2019s510/run_template/*cube78 . |
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ln -sf /nobackup/hzhang1/cs510/run_template/tile* . |
ln -sf /nobackup/hzhang1/cs510/run_template/tile* . |
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ln -sf /nobackup/hzhang1/cs510/run_template/GEBCO* . |
ln -sf /nobackup/hzhang1/cs510/run_template/GEBCO* . |
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ln -sf /nobackup/hzhang1/cs510/run_template/runoff* . |
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ln -sf /nobackup/hzhang1/cs510/run_template/DIFFKR* . |
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mv pickup.0000000216.cube78 pickup.0000000216 |
mv pickup.0000000216.cube78 pickup.0000000216 |
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mv pickup.0000000216.meta.cube78 pickup.0000000216.meta |
mv pickup.0000000216.meta.cube78 pickup.0000000216.meta |
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mv pickup_seaice.0000000216.cube78 pickup_seaice.0000000216 |
mv pickup_seaice.0000000216.cube78 pickup_seaice.0000000216 |
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mv pickup_seaice.0000000216.meta.cube78 pickup_seaice.0000000216.meta |
mv pickup_seaice.0000000216.meta.cube78 pickup_seaice.0000000216.meta |
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ln -sf /nobackup/hzhang1/forcing/cube78_forcing . |
ln -sf data.exf_1992-2008 data.exf |
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ln -sf /nobackup/hzhang1/forcing/jra25 . |
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ln -sf ../build/mitgcmuv . |
ln -sf ../build/mitgcmuv . |
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qsub run_cube92 |
qsub run_cube92 |
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# integrate 2009-2019 model on pleiades |
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cd ../run2 |
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cp ../../MITgcm_contrib/high_res_cube/cube92/input/* . |
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ln -sf /nobackup/hzhang1/cs510/run_template/pic*447120.*ta . |
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ln -sf /nobackup/hzhang1/cs510/run_template/tile* . |
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ln -sf /nobackup/hzhang1/cs510/run_template/GEBCO* . |
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ln -sf /nobackup/hzhang1/cs510/run_template/runoff* . |
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ln -sf /nobackup/hzhang1/cs510/run_template/DIFFKR* . |
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ln -sf /nobackup/hzhang1/forcing/jra55_do . |
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ln -sf /nobackup/hzhang1/forcing/jra55 . |
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ln -sf data.exf_2009-2019 data.exf |
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ln -sf data_2009-2019 data |
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ln -sf ../build/mitgcmuv . |
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qsub run_ivy |
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#update on 06/10/2013 regarding file location of initial conditions, forcing and building options |
==== solution history === |
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Initial condition and bathymetry files can be found here: |
solution is piece-wise due to availability of forcing dataset |
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http://ecco2.jpl.nasa.gov/data1/cube/run_template/ |
1992-2008 optimized blended forcing |
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for run_template/, need |
with data.exf_1992-2008 |
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*cube78 |
cube78_forcing/ for 1992-2002 |
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tile* |
Ecmwf/ for 2003-2008 |
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GEBCO* |
archived at |
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lfe:/u/hzhang1/From_PFE/forcing/cube78_forcing |
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Forcing files are here: |
lfe:/u/hzhang1/From_PFE/forcing/ecmwf |
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There are 2 sets of forcing fields. Basically we use JRA25 now. |
1992/01/03 pickup @ |
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http://ecco2.jpl.nasa.gov/data2/data/atmos/blend_forcing/cube78_forcing/ |
pfe:/nobackup/hzhang1/cs510/run_template/pic*216.cube78 |
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So for cube78_foring/, need |
2009-2017 jra25 and GPCP Forcing (overwritten by below) |
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DIFFKR* |
2009-2019 jra55 and jra55do rain (overwrite above) |
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runoff* |
with data.exf_2009-2019 |
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stored at |
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http://ecco2.jpl.nasa.gov/data2/data/atmos/jra25/ |
pfe:/nobackup/hzhang1/forcing/jra55 |
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for jra25/, download |
pfe:/nobackup/hzhang1/forcing/jra55_do |
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jra25*_19?? |
2009/01/01 pickup @ |
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jra25*_20?? |
pfe:/nobackup/hzhang1/cs510/run_template/pic*.0000447120.*ta |
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put three folders (run_template/, cube78_forcing/, and jra25/) aywhere. |
output model-grid: |
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Then look at http://mitgcm.org/viewvc/MITgcm/MITgcm_contrib/high_res_cube/cube92/README.cs510?view=markup |
lfe:/u/hzhang1/cubes/cube92 |
| 69 |
need to change line 19-21, line 26-27 (link those three folders or files therein to work directory) |
output interp to lat-lon grid: |
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ftp://ecco.jpl.nasa.gov/ECCO2/cube92_latlon_quart_90S90N/ |
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The build option above |
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http://mitgcm.org/viewvc/MITgcm/MITgcm/tools/build_options/linux_amd64_ifort+mpi_ice_nas |
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in line 12 of http://mitgcm.org/viewvc/MITgcm/MITgcm_contrib/high_res_cube/cube92/README.cs510?view=markup |
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is tailored for NASA supercompuer Pleiades. |
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A particular option file is needed for other computer. |
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A generic one is |
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http://mitgcm.org/viewvc/MITgcm/MITgcm/tools/build_options/linux_amd64_gfortran?view=markup&sortby=date |
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but one still needs to load some modules or export some environmnet variables before compiling |
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as shown by line 16-45. |
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