/[MITgcm]/MITgcm_contrib/high_res_cube/cube92/README.cs510
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revision 1.4 by zhc, Tue Jun 25 23:46:49 2019 UTC revision 1.5 by dimitri, Thu Jun 27 05:45:39 2019 UTC
# Line 1  Line 1 
 mkdir cube92  
 cd cube92  
   
1  # get code from anonymous CVS server  # get code from anonymous CVS server
2  cvs co MITgcm_contrib/high_res_cube/cube92  cvs co MITgcm_contrib/high_res_cube/cube92
3  cvs co -r checkpoint62h MITgcm_code  cvs co -r checkpoint62h MITgcm_code
 cd MITgcm  
 mkdir build run  
4    
5  # build executable  # build executable on pleiades
6    cd MITgcm
7    mkdir build run1 run2
8  cd build  cd build
9  ../tools/genmake2 -mo ../../MITgcm_contrib/high_res_cube/cube92/code -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas  module purge
10    module load comp-intel/2016.2.181 mpi-sgi/mpt.2.14r19 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
11    ../tools/genmake2 -mo ../../MITgcm_contrib/high_res_cube/cube92/code -of \
12       ../../MITgcm_contrib/high_res_cube/cube92/code/linux_amd64_ifort+mpi_ice_nas
13  make depend  make depend
14  make -j 16  make -j 16
15    
16  # integrate model  # integrate 1992-2008 model on pleiades
17  cd ../run  cd ../run1
18  cp ../../MITgcm_contrib/high_res_cube/cube92/input/* .  cp ../../MITgcm_contrib/high_res_cube/cube92/input/* .
19  ln -sf /nobackup/hzhang1/cs510/run_template/*cube78 .  ln -sf /nobackup/hzhang1/cdata.exf_2009-2019s510/run_template/*cube78 .
20  ln -sf /nobackup/hzhang1/cs510/run_template/tile* .  ln -sf /nobackup/hzhang1/cs510/run_template/tile* .
21  ln -sf /nobackup/hzhang1/cs510/run_template/GEBCO* .  ln -sf /nobackup/hzhang1/cs510/run_template/GEBCO* .
22  ln -sf /nobackup/hzhang1/cs510/run_template/runoff* .  ln -sf /nobackup/hzhang1/cs510/run_template/runoff* .
# Line 29  ln -sf data.exf_1992-2008 data.exf Line 29  ln -sf data.exf_1992-2008 data.exf
29  ln -sf ../build/mitgcmuv .  ln -sf ../build/mitgcmuv .
30  qsub run_cube92  qsub run_cube92
31    
32    # integrate 2009-2019 model on pleiades
33  The build option above  cd ../run2
34  http://mitgcm.org/viewvc/MITgcm/MITgcm/tools/build_options/linux_amd64_ifort+mpi_ice_nas  cp ../../MITgcm_contrib/high_res_cube/cube92/input/* .
35  in line 12 of http://mitgcm.org/viewvc/MITgcm/MITgcm_contrib/high_res_cube/cube92/README.cs510?view=markup  ln -sf /nobackup/hzhang1/cs510/run_template/*cube78 .
36  is tailored for NASA supercompuer Pleiades.  ln -sf /nobackup/hzhang1/cs510/run_template/tile* .
37  A particular option file is needed for other computer.  ln -sf /nobackup/hzhang1/cs510/run_template/GEBCO* .
38  A generic one is  ln -sf /nobackup/hzhang1/cs510/run_template/runoff* .
39  http://mitgcm.org/viewvc/MITgcm/MITgcm/tools/build_options/linux_amd64_gfortran?view=markup&sortby=date  ln -sf /nobackup/hzhang1/cs510/run_template/DIFFKR* .
40  but one still needs to load some modules or export some environmnet variables before compiling  mv pickup.0000000216.cube78 pickup.0000000216
41  as shown by line 16-45.  mv pickup.0000000216.meta.cube78 pickup.0000000216.meta
42    mv pickup_seaice.0000000216.cube78 pickup_seaice.0000000216
43    mv pickup_seaice.0000000216.meta.cube78 pickup_seaice.0000000216.meta      
44    ln -sf data.exf_1992-2008 data.exf
45    ln -sf ../build/mitgcmuv .
46    qsub run_cube92
47    
48  ==== solution history ===  ==== solution history ===
49  solution is piece-wise due to avalability of forcing dataset  solution is piece-wise due to availability of forcing dataset
50          1992-2008  optimized blended forcing              1992-2008  optimized blended forcing    
51                     with data.exf_1992-2008                     with data.exf_1992-2008
52                          cube78_forcing/ for 1992-2002                          cube78_forcing/ for 1992-2002
53                          ecmwf/          for 2003-2008                          Ecmwf/          for 2003-2008
54                          archived at                          archived at
55                                  lfe:/u/hzhang1/From_PFE/forcing/cube78_forcing                                  lfe:/u/hzhang1/From_PFE/forcing/cube78_forcing
56                                  lfe:/u/hzhang1/From_PFE/forcing/ecmwf                                  lfe:/u/hzhang1/From_PFE/forcing/ecmwf
57                     1992/01/03 pickup @                     1992/01/03 pickup @
58                                  pfe:/nobackup/hzhang1/cs510/run_template/pic*216.cube78                                  pfe:/nobackup/hzhang1/cs510/run_template/pic*216.cube78
59          2009-2017  jra25 and GPCP forcing (overwritten by below)          2009-2017  jra25 and GPCP Forcing (overwritten by below)
60          2009-2019  jra55 and jra55do rain (overwrite above)          2009-2019  jra55 and jra55do rain (overwrite above)
61                     with data.exf_2009-2019                     with data.exf_2009-2019
62                          stored at                          stored at
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