|
mkdir cube92 |
|
|
cd cube92 |
|
|
|
|
| 1 |
# get code from anonymous CVS server |
# get code from anonymous CVS server |
| 2 |
cvs co MITgcm_contrib/high_res_cube/cube92 |
cvs co MITgcm_contrib/high_res_cube/cube92 |
| 3 |
cvs co -r checkpoint62h MITgcm_code |
cvs co -D "2010/06/30 17:51:36" MITgcm_code |
|
cd MITgcm |
|
|
mkdir build run |
|
| 4 |
|
|
| 5 |
# build executable |
# build executable on pleiades |
| 6 |
|
cd MITgcm |
| 7 |
|
mkdir build run1 run2 |
| 8 |
cd build |
cd build |
| 9 |
../tools/genmake2 -mo ../../MITgcm_contrib/high_res_cube/cube92/code -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas |
module purge |
| 10 |
|
module load comp-intel/2016.2.181 mpi-sgi/mpt.2.14r19 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt |
| 11 |
|
../tools/genmake2 -mo ../../MITgcm_contrib/high_res_cube/cube92/code -of \ |
| 12 |
|
../../MITgcm_contrib/high_res_cube/cube92/code/linux_amd64_ifort+mpi_ice_nas -mpi |
| 13 |
make depend |
make depend |
| 14 |
make -j 16 |
make -j 16 |
| 15 |
|
|
| 16 |
# integrate model |
# integrate 1992-2008 model on pleiades |
| 17 |
cd ../run |
cd ../run1 |
| 18 |
cp ../../MITgcm_contrib/high_res_cube/cube92/input/* . |
cp ../../MITgcm_contrib/high_res_cube/cube92/input/* . |
| 19 |
ln -sf /nobackup/hzhang1/cs510/run_template/*cube78 . |
ln -sf /nobackup/hzhang1/cdata.exf_2009-2019s510/run_template/*cube78 . |
| 20 |
ln -sf /nobackup/hzhang1/cs510/run_template/tile* . |
ln -sf /nobackup/hzhang1/cs510/run_template/tile* . |
| 21 |
ln -sf /nobackup/hzhang1/cs510/run_template/GEBCO* . |
ln -sf /nobackup/hzhang1/cs510/run_template/GEBCO* . |
| 22 |
|
ln -sf /nobackup/hzhang1/cs510/run_template/runoff* . |
| 23 |
|
ln -sf /nobackup/hzhang1/cs510/run_template/DIFFKR* . |
| 24 |
mv pickup.0000000216.cube78 pickup.0000000216 |
mv pickup.0000000216.cube78 pickup.0000000216 |
| 25 |
mv pickup.0000000216.meta.cube78 pickup.0000000216.meta |
mv pickup.0000000216.meta.cube78 pickup.0000000216.meta |
| 26 |
mv pickup_seaice.0000000216.cube78 pickup_seaice.0000000216 |
mv pickup_seaice.0000000216.cube78 pickup_seaice.0000000216 |
| 27 |
mv pickup_seaice.0000000216.meta.cube78 pickup_seaice.0000000216.meta |
mv pickup_seaice.0000000216.meta.cube78 pickup_seaice.0000000216.meta |
| 28 |
ln -sf /nobackup/hzhang1/forcing/cube78_forcing . |
ln -sf data.exf_1992-2008 data.exf |
|
ln -sf /nobackup/hzhang1/forcing/jra25 . |
|
| 29 |
ln -sf ../build/mitgcmuv . |
ln -sf ../build/mitgcmuv . |
| 30 |
qsub run_cube92 |
qsub run_cube92 |
| 31 |
|
|
| 32 |
|
# integrate 2009-2019 model on pleiades |
| 33 |
|
cd ../run2 |
| 34 |
|
cp ../../MITgcm_contrib/high_res_cube/cube92/input/* . |
| 35 |
|
ln -sf /nobackup/hzhang1/cs510/run_template/pic*447120.*ta . |
| 36 |
|
ln -sf /nobackup/hzhang1/cs510/run_template/tile* . |
| 37 |
|
ln -sf /nobackup/hzhang1/cs510/run_template/GEBCO* . |
| 38 |
|
ln -sf /nobackup/hzhang1/cs510/run_template/runoff* . |
| 39 |
|
ln -sf /nobackup/hzhang1/cs510/run_template/DIFFKR* . |
| 40 |
|
ln -sf /nobackup/hzhang1/forcing/jra55_do . |
| 41 |
|
ln -sf /nobackup/hzhang1/forcing/jra55 . |
| 42 |
|
ln -sf data.exf_2009-2019 data.exf |
| 43 |
|
ln -sf data_2009-2019 data |
| 44 |
|
ln -sf ../build/mitgcmuv . |
| 45 |
|
qsub run_ivy |
| 46 |
|
|
| 47 |
#update on 06/10/2013 regarding file location of initial conditions, forcing and building options |
==== solution history === |
| 48 |
Initial condition and bathymetry files can be found here: |
solution is piece-wise due to availability of forcing dataset |
| 49 |
http://ecco2.jpl.nasa.gov/data1/cube/run_template/ |
1992-2008 optimized blended forcing |
| 50 |
for run_template/, need |
with data.exf_1992-2008 |
| 51 |
*cube78 |
cube78_forcing/ for 1992-2002 |
| 52 |
tile* |
Ecmwf/ for 2003-2008 |
| 53 |
GEBCO* |
archived at |
| 54 |
|
lfe:/u/hzhang1/From_PFE/forcing/cube78_forcing |
| 55 |
Forcing files are here: |
lfe:/u/hzhang1/From_PFE/forcing/ecmwf |
| 56 |
There are 2 sets of forcing fields. Basically we use JRA25 now. |
1992/01/03 pickup @ |
| 57 |
http://ecco2.jpl.nasa.gov/data2/data/atmos/blend_forcing/cube78_forcing/ |
pfe:/nobackup/hzhang1/cs510/run_template/pic*216.cube78 |
| 58 |
So for cube78_foring/, need |
2009-2017 jra25 and GPCP Forcing (overwritten by below) |
| 59 |
DIFFKR* |
2009-2019 jra55 and jra55do rain (overwrite above) |
| 60 |
runoff* |
with data.exf_2009-2019 |
| 61 |
|
stored at |
| 62 |
http://ecco2.jpl.nasa.gov/data2/data/atmos/jra25/ |
pfe:/nobackup/hzhang1/forcing/jra55 |
| 63 |
for jra25/, download |
pfe:/nobackup/hzhang1/forcing/jra55_do |
| 64 |
jra25*_19?? |
2009/01/01 pickup @ |
| 65 |
jra25*_20?? |
pfe:/nobackup/hzhang1/cs510/run_template/pic*.0000447120.*ta |
| 66 |
|
|
| 67 |
put three folders (run_template/, cube78_forcing/, and jra25/) aywhere. |
output model-grid: |
| 68 |
Then look at http://mitgcm.org/viewvc/MITgcm/MITgcm_contrib/high_res_cube/cube92/README.cs510?view=markup |
lfe:/u/hzhang1/cubes/cube92 |
| 69 |
need to change line 19-21, line 26-27 (link those three folders or files therein to work directory) |
output interp to lat-lon grid: |
| 70 |
|
ftp://ecco.jpl.nasa.gov/ECCO2/cube92_latlon_quart_90S90N/ |
|
The build option above |
|
|
http://mitgcm.org/viewvc/MITgcm/MITgcm/tools/build_options/linux_amd64_ifort+mpi_ice_nas |
|
|
in line 12 of http://mitgcm.org/viewvc/MITgcm/MITgcm_contrib/high_res_cube/cube92/README.cs510?view=markup |
|
|
is tailored for NASA supercompuer Pleiades. |
|
|
A particular option file is needed for other computer. |
|
|
A generic one is |
|
|
http://mitgcm.org/viewvc/MITgcm/MITgcm/tools/build_options/linux_amd64_gfortran?view=markup&sortby=date |
|
|
but one still needs to load some modules or export some environmnet variables before compiling |
|
|
as shown by line 16-45. |
|
Parent Directory
| 
Revision Log
| 
Revision Graph
| 
Patch