| 1 |
heimbach |
1.1 |
|
| 2 |
|
|
25-Sep-2008 |
| 3 |
|
|
heimbach@mit.edu, gforget@mit.edu, dmenemenlis@gmail.com, hzhang@caltech.edu |
| 4 |
|
|
|
| 5 |
|
|
# The following is a description of the CS510 |
| 6 |
|
|
# adjoint-based state estimation setup. |
| 7 |
|
|
# It is based on checkpoint61d. |
| 8 |
|
|
# A prototype setup ran successfully in a 360-proc. config. |
| 9 |
|
|
# on beagle.darwinproject.mit.edu |
| 10 |
|
|
# Stable run for 10-days. sensitivity growth for 1 month |
| 11 |
|
|
# (but not much tweaking with viscosity etc.) |
| 12 |
|
|
# |
| 13 |
|
|
# Default setup for columbia set up to use 450 processors of tile size 34x34. |
| 14 |
|
|
|
| 15 |
|
|
# 0. Set some variables |
| 16 |
|
|
set mitgcm_basedir = [ for example ~/MITgcm_c61d ] |
| 17 |
|
|
|
| 18 |
|
|
# 1. Check out clean MITgcm checkpoint from CVS |
| 19 |
|
|
cvs co -d MITgcm_c61d -r checkpoint61d MITgcm |
| 20 |
|
|
|
| 21 |
|
|
# 2. Check out config. files for this setup: |
| 22 |
|
|
cvs co MITgcm_contrib/high_res_cube/cs510_adjoint |
| 23 |
|
|
|
| 24 |
|
|
# 3. (I prefer it that way, but a matter of taste), |
| 25 |
|
|
\cp -r MITgcm_contrib/high_res_cube/cs510_adjoint $mitgcm_basedir/verification/. |
| 26 |
|
|
|
| 27 |
|
|
# 5. Prepare build; we now need cyrus-makedepend |
| 28 |
|
|
cd $mitgcm_basedir/tools/cyrus-imapd-makedepend |
| 29 |
|
|
./configure |
| 30 |
|
|
make |
| 31 |
|
|
|
| 32 |
|
|
# 6. Make sure to use default topology (or use different one) |
| 33 |
|
|
cd $mitgcm_basedir/verification/cs510_adjoint/code_ad/ |
| 34 |
zhc |
1.2 |
\cp -f topol_360_85x51/* . |
| 35 |
zhc |
1.5 |
#level options: 50 levels |
| 36 |
|
|
\cp -f SIZE.h_lev50 SIZE.h |
| 37 |
zhc |
1.4 |
#DIVA options: no_diva |
| 38 |
|
|
\cp -f ECCO_CPPOPTIONS.h_nodiva ECCO_CPPOPTIONS.h |
| 39 |
heimbach |
1.1 |
|
| 40 |
|
|
# 7. Build model |
| 41 |
|
|
cd $mitgcm_basedir/verification/cs510_adjoint/build_ad/ |
| 42 |
zhc |
1.4 |
#without DIVA |
| 43 |
heimbach |
1.1 |
../../../tools/genmake2 "-of" "../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas" \ |
| 44 |
|
|
"-makedepend" "../../../tools/cyrus-imapd-makedepend/makedepend" \ |
| 45 |
|
|
"-mods" "../code_ad" |
| 46 |
zhc |
1.4 |
#with DIVA |
| 47 |
|
|
#../../../tools/genmake2 -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas \ |
| 48 |
|
|
# -adof ../../../tools/adjoint_options/adjoint_diva_mpi \ |
| 49 |
|
|
# -makedepend ../../../tools/cyrus-imapd-makedepend/makedepend -mods ../code_ad |
| 50 |
|
|
|
| 51 |
heimbach |
1.1 |
make depend |
| 52 |
|
|
make adtaf |
| 53 |
|
|
make -j adall |
| 54 |
|
|
|
| 55 |
|
|
|
| 56 |
zhc |
1.2 |
#running model: |
| 57 |
|
|
cd .. |
| 58 |
|
|
mkdir run |
| 59 |
|
|
cd run |
| 60 |
|
|
ln -sf ../build_ad/mitgcmuv_ad . |
| 61 |
|
|
cp -p ../input_ad/* . |
| 62 |
zhc |
1.4 |
ln -sf /nobackup2a/menemenl/cs510_ad_test/MITgcm/verification/cs510_adjoint/input_fields/* . |
| 63 |
zhc |
1.2 |
#forcing: using cube78, essentially ECMWF after 2002 |
| 64 |
zhc |
1.4 |
ln -sf /nobackup2a/menemenl/forcing/cube78_forcing . |
| 65 |
|
|
#template |
| 66 |
|
|
ln -sf /nobackup2a/menemenl/cs510/run_template_28lev . |
| 67 |
|
|
#pickup: using level28 |
| 68 |
zhc |
1.5 |
#ln -sf /nobackup2a/menemenl/cs510/cs510_28lev/MITgcm/run/pickup_seaice.0000052560.data pickup_seaice.0000000001.data |
| 69 |
|
|
#ln -sf /nobackup2a/menemenl/cs510/cs510_28lev/MITgcm/run/pickup.0000052560.data pickup.0000000001.data |
| 70 |
|
|
#ln -sf /nobackup2a/menemenl/cs510/cs510_28lev/MITgcm/run/pickup_seaice.0000052560.meta pickup_seaice.0000000001.meta |
| 71 |
|
|
#ln -sf /nobackup2a/menemenl/cs510/cs510_28lev/MITgcm/run/pickup.0000052560.meta pickup.0000000001.meta |
| 72 |
zhc |
1.4 |
#pickup: using level50 |
| 73 |
zhc |
1.5 |
ln -sf /nobackup2a/menemenl/cs510_ad_test/MITgcm/verification/cs510_forward/run3_sss/pickup_seaice.0000052560.data pickup_seaice.0000000001.data |
| 74 |
|
|
ln -sf /nobackup2a/menemenl/cs510_ad_test/MITgcm/verification/cs510_forward/run3_sss/pickup_seaice.0000052560.meta pickup_seaice.0000000001.meta |
| 75 |
|
|
ln -sf /nobackup2a/menemenl/cs510_ad_test/MITgcm/verification/cs510_forward/run3_sss/pickup.0000052560.data pickup.0000000001.data |
| 76 |
|
|
ln -sf /nobackup2a/menemenl/cs510_ad_test/MITgcm/verification/cs510_forward/run3_sss/pickup.0000052560.meta pickup.0000000001.meta |
| 77 |
zhc |
1.4 |
|
| 78 |
|
|
#change data*... |
| 79 |
zhc |
1.5 |
#level 50 |
| 80 |
|
|
\cp -f data.err_lev50 data.err |
| 81 |
|
|
\cp -f data.ecco_lev50 data.ecco |
| 82 |
|
|
\cp -f data_lev50 data |
| 83 |
zhc |
1.4 |
|
| 84 |
zhc |
1.2 |
|
| 85 |
|
|
#change jobfile: cs510_adj_run |
| 86 |
|
|
qsub cs510_adj_run |
Parent Directory
| 
Revision Log
| 
Revision Graph