# Instructions for setting up 28-level CS510 integrations with sea-ice
# (example below is for a 216-cpu configuration on Columbia).

# get code from anonymous CVS server
 cd /nobackup2a/menemenl/cs510/cs510_28lev
 cvs co MITgcm_contrib/high_res_cube/cs510_28lev
 cvs co MITgcm_code

# build and compile code
 cd MITgcm
 mkdir build run
 cd build
 \rm *
 \cp ../../MITgcm_contrib/high_res_cube/cs510_28lev/code/* .
 \cp ../../MITgcm_contrib/high_res_cube/cs510_28lev/code/s216t_85x85/* .
 \mv SIZE.h_216 SIZE.h 
 ../tools/genmake2 -of linux_ia64_ifort+mpi_altix_nas
 make depend
 make -j

# integrate model
 cd ../run
 \rm *
 \cp ../../MITgcm_contrib/high_res_cube/cs510_28lev/input/* .
 \ln -sf /nobackup2a/menemenl/cs510/run_template/tile00* .
 \ln -sf /nobackup2a/menemenl/cs510/run_template_28lev .
 \ln -sf /nobackup2a/menemenl/forcing/cube78_forcing .
 \cp ../build/mitgcmuv .
 qsub job_altix

# to generate initial pickup files run for 4 days with 2-min time steps
 niter0      = 0,
 endtime     = 345600.,
 deltaT      = 120.,
 pChkptFreq  = 345600.,
 monitorFreq = 1.,