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# Instructions for setting up 28-level CS510 integrations with sea-ice |
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# (example below is for cube81 216-cpu configuration on Columbia). |
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|
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# get code from anonymous CVS server |
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cd /nobackup2a/menemenl/cs510/cs510_28lev |
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cvs co MITgcm_contrib/high_res_cube/cs510_28lev |
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cvs co MITgcm_code |
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|
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# build and compile code |
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# example below is for a 216-cpu configuration on Columbia |
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|
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# Get confiuration and forcing files. |
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# Example below is for cube81 forcing on |
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# columbia:/nobackup2a/menemenl |
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cd /nobackup2a/menemenl |
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mkdir cube81 |
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cd cube81 |
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ln -sf ../run_template . |
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ln -sf ../cube78_forcing . |
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ln -sf ../ncep_rgau/ . |
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|
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# 510*510*6*50, 450-cpu cube sphere on altix with ifort |
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cd MITgcm |
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mkdir build run |
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cd build |
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\rm * |
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\cp ../../MITgcm_contrib/high_res_cube/code-mods/* . |
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\cp ../../MITgcm_contrib/high_res_cube/code-mods/s1350t_34x34/* . |
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\mv SIZE.h_450 SIZE.h |
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../tools/genmake2 -of linux_ia64_ifort+mpi_altix_nas |
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make depend |
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make -j |
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cd ../run |
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\rm * |
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\cp ../../MITgcm_contrib/high_res_cube/input/* . |
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ln -sf ../../run_template/* . |
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\rm pickup* *192_94* *.m D*1 E* G*all.bin L* W*10.bin h*[6-7] PHC* |
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\mv data.exf_hr data.exf |
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\mv data_hr data |
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ln -sf ../../run_template/pickup.0000000216.cube78 pickup.0000000216 |
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ln -sf ../../run_template/pickup_seaice.0000000216.cube78 pickup_seaice.0000000216 |
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ln -sf ../../run_template/pickup.0000000216.meta.cube78 pickup.0000000216.meta |
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ln -sf ../../run_template/pickup_seaice.0000000216.meta.cube78 pickup_seaice.0000000216.meta |
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\cp ../build/mitgcmuv . |
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\mv job_altix cube81 |
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qsub cube81 |
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|
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# generating initial pickup files for cube78 |
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data |
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# run for 4 days from time step 216 with 2-min time step |
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endtime=345600., |
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deltaT=120., |
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pChkptFreq=345600., |
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monitorFreq=1., |
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|
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cd ../../run_template |
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mv pickup.0000000216.cube78 pickup.0000000216.cube78_raw |
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mv pickup_seaice.0000000216.cube78 pickup_seaice.0000000216.cube78_raw |
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cd ../cube78/MITgcm/run |
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\mv pickup.0000002880.data ../../run_template/pickup.0000000216.cube78 |
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\mv pickup_seaice.0000002880.data ../../run_template/pickup_seaice.0000000216.cube78 |
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\mv pickup.0000002880.meta ../../run_template/pickup.0000000216.meta.cube78 |
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\mv pickup_seaice.0000002880.meta ../../run_template/pickup_seaice.0000000216.meta.cube78 |
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\rm *.meta *.data STD* cube78.o* |
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\cp ../../MITgcm_contrib/high_res_cube/input/data_hr data |
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ln -sf ../../run_template/pickup.0000000216.cube78 pickup.0000000216 |
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ln -sf ../../run_template/pickup_seaice.0000000216.cube78 pickup_seaice.0000000216 |
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ln -sf ../../run_template/pickup.0000000216.meta.cube78 pickup.0000000216.meta |
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ln -sf ../../run_template/pickup_seaice.0000000216.meta.cube78 pickup_seaice.0000000216.meta |
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qsub cube78 |
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