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Revision 1.90 - (show annotations) (download)
Wed Feb 7 01:30:48 2007 UTC (18 years, 5 months ago) by dimitri
Branch: MAIN
Changes since 1.89: +3 -1 lines 
preparing for cube55
1
2 Instructions for setting up a cube-sphere integration with sea-ice.
3
4 Forcing fields and other input files needed for the CS510
5 configuration can be obtained from
6 http://ecco2.org/products/model_setups/cs510.html
7
8 =================
9 UPDATES
10
11 February 6, 2006: cube56, same as cube 50 with SEAICEuseFlooding
12
13 February 1, 2006: back to cube50 default (bottomDragQuadratic = 0.002)
14 removed UVEL and VVEL from diagnostics
15
16 January 5, 2006: cube51, like cube50 but with bottomDragQuadratic = 0.0012
17
18 January 5, 2006: cube50, like cube48 but with snow advection
19
20 December 30, 2006: updates for cube49, the first
21 "blend" integration.
22
23 December 11, 2006: preparing for cube47, same as cube43
24 but with Arctic monthly river runoff climatology.
25
26 December 5, 2006: 216-CPU code for cube46
27 Changed diagnostics to accomodate JMCs latest and some
28 changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h
29 to speed up code.
30
31 November 7, 2006: 216-CPU code for cube43
32 Bug fixes in growth.F routine and new set of diagnostics
33
34 October 15, 2006: 216-CPU code for cube40
35
36 September 28, 2006: 216-CPU code for cube38
37
38 September 4, 2006
39 Modified 32*32*6*15 experiments to use grid_cs32.* files from
40 verification/tutorial_held_suarez_cs/input instead of
41 tile* files from verification/global_ocean.cs32x15/input
42
43 August 8, 2006: 216-CPU code and input used for cube37
44 using "June 10, 2006" MITgcm code.
45
46 for online T/S profile diagnostics all that is needed is
47 profiles_init_fixed
48 profiles_inloop
49 see pkg/ecco/ecco_cost_init_fixed.F
50 pkg/ecco/cost_averagesfields.F
51
52 ##########################################################################
53 ##########################################################################
54 # Get forcing files, etc.
55 # Example below is for cube46 on /nobackup2a/menemenl
56
57 cd /nobackup2a/menemenl
58 mkdir cube47
59 cd cube47
60 ln -sf ../run_template .
61 ln -sf ../ncep_rgau .
62
63
64 ##########################################################################
65 ##########################################################################
66 # getting the code from anonymous CVS server
67
68 bash or sh shell:
69 $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
70 $ cvs login
71 ( enter the CVS password: "cvsanon" )
72
73 tcsh or csh shell:
74 $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
75 $ cvs login
76 ( enter the CVS password: "cvsanon" )
77
78 cvs co MITgcm_contrib/high_res_cube/README_ice
79 cvs co MITgcm_contrib/high_res_cube/code-mods
80 cvs co MITgcm_contrib/high_res_cube/input
81 cvs co MITgcm_contrib/high_res_cube/results
82 cvs co MITgcm_code
83 cvs co MITgcm/verification/global_ocean.cs32x15
84 cvs co MITgcm/verification/tutorial_held_suarez_cs/input
85
86
87 ##########################################################################
88 ##########################################################################
89 # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
90
91 cd MITgcm/verification/global_ocean.cs32x15/code
92 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
93 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
94 \cp SIZE.h_216 SIZE.h
95 \cp packages.conf_hr packages.conf
96
97 cd ../build
98 \rm *
99 ../../../tools/genmake2 -mods=../code -of ../code/linux_ia64_ifort+mpi_altix_nas
100 make depend
101 make -j
102
103 cd ..
104 mkdir run
105 cd run
106 \rm *
107 \cp ../input/* .
108 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
109 ln -sf ../../../../run_template/* .
110 \rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
111 \rm bathy_Hmin50.bin *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
112 ln -sf ../../../../run_template/pickup.0000000216.cube49 pickup.0000000216
113 ln -sf ../../../../run_template/pickup_seaice.0000000216.cube48 pickup_seaice.0000000216
114 \cp ../build/mitgcmuv .
115 qsub job_altix
116
117
118 ##########################################################################
119 ##########################################################################
120 # 32*32*6*15, 1-cpu cube sphere
121
122 cd MITgcm/verification/global_ocean.cs32x15/code
123 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
124 \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
125 \rm CPP_EEOPTIONS.h
126 cd ../build
127 \rm *
128 ../../../tools/genmake2 -mods=../code
129 make depend
130 make
131 cd ..
132 mkdir run
133 cd run
134 \rm *
135 \cp ../../tutorial_held_suarez_cs/input/grid* .
136 \cp ../input/* .
137 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
138 ../build/mitgcmuv >& output.txt
139
140 comparison output is in:
141 ../../../../MITgcm_contrib/high_res_cube/results/output.txt
142
143 to use matlab to look at the output
144 matlab
145
146 for fld={'SIuice','SIvice','SIheff','SIarea','oceQsw', ...
147 'surForcT','oceTAUX','oceTAUY','surForcS'}
148 tmp=permute(readbin([fld{1} '.0000000072.data'],[32,6,32]),[1 3 2]);
149 cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
150 end
151
152 heff=permute(readbin(['SIheff.0000000072.data'],[32,6,32]),[1 3 2]);
153 mask=0*heff; mask(find(heff>.001))=1;
154 uice=mask.*permute(readbin(['SIuice.0000000072.data'],[32,6,32]),[1 3 2]);
155 vice=mask.*permute(readbin(['SIvice.0000000072.data'],[32,6,32]),[1 3 2]);
156 clf
157 subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
158 subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
159 subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
160 subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
161
162
163 ##########################################################################
164 ##########################################################################
165 # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
166
167 cd MITgcm/verification/global_ocean.cs32x15/code
168 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
169 \cp ../code_alt/code.176t_8x4/* .
170 cd ../build
171 \rm *
172 ../../../tools/genmake2 -mods=../code
173 make depend
174 make
175 cd ..
176 mkdir run
177 cd run
178 \rm *
179 \cp ../../tutorial_held_suarez_cs/input/grid* .
180 \cp ../input/* .
181 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
182 ../build/mitgcmuv >& output.txt
183
184
185 ##########################################################################
186 ##########################################################################
187 # 32*32*6*15, 2-cpu cube sphere on the altices with ifort
188
189 cd MITgcm/verification/global_ocean.cs32x15/code
190 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
191 \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
192 \cp SIZE.h_mpi SIZE.h
193
194 cd ../build
195 \rm *
196 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
197 make depend
198 make -j
199
200 cd ..
201 mkdir run
202 cd run
203 \rm *
204 \cp ../../tutorial_held_suarez_cs/input/grid* .
205 \cp ../input/* .
206 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
207 mpirun -np 2 ../build/mitgcmuv
208
209
210 ##########################################################################
211 ##########################################################################
212 # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
213 # starting with pickup file from end of 1992
214 # requires input files in sudirectories run_template and ncep_rgau
215
216 cd MITgcm/verification/global_ocean.cs32x15/code
217 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
218 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
219 \cp packages.conf_hr packages.conf
220
221 cd ../build
222 \rm *
223 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
224 make depend
225 make -j
226
227 cd ..
228 mkdir run
229 cd run
230 \rm *
231 \cp ../input/* .
232 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
233 qsub job_altix92_54t
234
235
236 ##########################################################################
237 ##########################################################################
238 # 510*510*6*50, 1500-tile, 150-cpu, excludes land
239 # uses s1500t_17x51 configuration
240
241 cd MITgcm/verification/global_ocean.cs32x15/code
242 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
243 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
244 \cp SIZE.h_150 SIZE.h
245 \cp packages.conf_hr packages.conf
246
247 cd ../build
248 \rm *
249 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
250 make depend
251 make -j
252
253 cd ..
254 mkdir run
255 cd run
256 \rm *
257 \cp ../input/* .
258 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
259 ln -sf ../../../../run_template/* .
260 \rm pickup*
261 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
262 ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
263 \cp ../build/mitgcmuv mitgcmuv150
264 qsub job_altix150
265
266
267 ##########################################################################
268 ##########################################################################
269 # 510*510*6*50, 1500-tile, 375-cpu, excludes land
270 # uses s1500t_17x51 configuration
271 # example for running on c17-c20 using arrayd
272
273 cd MITgcm/verification/global_ocean.cs32x15/code
274 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
275 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
276 \cp SIZE.h_375 SIZE.h
277 \cp packages.conf_hr packages.conf
278
279 cd ../build
280 \rm *
281 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
282 make depend
283 make -j
284
285 cd ..
286 mkdir run
287 cd run
288 \rm *
289 \cp ../input/* .
290 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
291 ln -sf ../../../../run_template/* .
292 \rm pickup*
293 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
294 ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
295 \cp ../build/mitgcmuv .
296 job_c20_375cpu < /dev/null >&! output.run &
297
298
299 ##########################################################################
300 ##########################################################################
301 # 510*510*6*50, 1500-tile, 375-cpu, excludes land
302 # uses s1500t_17x51 configuration
303 # example for running on c17-c20 using arrayd
304
305 cd MITgcm/verification/global_ocean.cs32x15/code
306 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
307 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
308 \cp SIZE.h_375 SIZE.h
309 \cp packages.conf_hr packages.conf
310
311 cd ../build
312 \rm *
313 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
314 make depend
315 make -j
316
317 cd ..
318 mkdir run
319 cd run
320 \rm *
321 \cp ../input/* .
322 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
323 ln -sf ../../../../run_template/* .
324 \rm pickup*
325 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
326 ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
327 \cp ../build/mitgcmuv .
328 job_c20_375cpu < /dev/null >&! output.run &
329
330
331 ##########################################################################
332 ##########################################################################
333 # 510*510*6*50, 1500-tile, 500-cpu, excludes land
334 # uses s1500t_17x51 configuration
335 # example for running on c17-c20 using arrayd
336
337 cd MITgcm/verification/global_ocean.cs32x15/code
338 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
339 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
340 \cp SIZE.h_500 SIZE.h
341 \cp packages.conf_hr packages.conf
342
343 cd ../build
344 \rm *
345 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
346 make depend
347 make -j
348
349 cd ..
350 mkdir run
351 cd run
352 \rm *
353 \cp ../input/* .
354 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
355 ln -sf ../../../../run_template/* .
356 \rm pickup*
357 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
358 ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
359 \cp ../build/mitgcmuv .
360 job_c19_500cpu < /dev/null >&! output.run &
361
362
363 ##########################################################################
364 ##########################################################################
365 # 510*510*6*50, 216-cpu cube sphere on cosmos
366
367 cd MITgcm/verification/global_ocean.cs32x15/code
368 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
369 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
370 \cp SIZE.h_216 SIZE.h
371 \cp packages.conf_hr packages.conf
372
373 module unload latest_intel80
374 module unload mpich-gm-intel80
375 module load latest_intel81
376 module load mpich-gm-intel81
377
378 cd ../build
379 \rm *
380 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
381 make depend
382 make -j
383
384 cd ..
385 mkdir run
386 cd run
387 \rm *
388 \cp ../input/* .
389 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
390 ln -sf ../../../../run_template/* .
391 \rm pickup*
392 ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
393 ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
394 \cp ../build/mitgcmuv .
395 bsub < job_cosmos
396
397
398 ##########################################################################
399 ##########################################################################
400 # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
401 # requires input files in sudirectories run_template and ncep_rgau
402 # presently residing under orion:/tmp1/dmenem/cube
403
404 cd MITgcm/verification/global_ocean.cs32x15/code
405 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
406 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
407 \cp SIZE.h_54 SIZE.h
408 \cp packages.conf_hr packages.conf
409
410 cd ../build
411 \rm *
412 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
413 make depend
414 make -j
415
416 cd ..
417 mkdir run
418 cd run
419 \rm *
420 \cp ../input/* .
421 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
422 qsub job_orion
423
424
425 ##########################################################################
426 ##########################################################################
427 # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
428 # requires input files in sudirectories run_template and ncep_rgau
429 # presently residing under orion:/tmp1/dmenem/cube
430
431 cd MITgcm/verification/global_ocean.cs32x15/code
432 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
433 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
434 \cp SIZE.h_41 SIZE.h
435 \cp packages.conf_hr packages.conf
436
437 cd ../build
438 \rm *
439 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
440 make depend
441 make -j
442
443 cd ..
444 mkdir run
445 cd run
446 \rm *
447 \cp ../input/* .
448 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
449 qsub job_orion41
450
451
452 ##########################################################################
453 ##########################################################################
454 # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
455 # requires input files in sudirectories run_template and ncep_rgau
456 # presently residing under orion:/tmp1/dmenem/cube
457
458 cd MITgcm/verification/global_ocean.cs32x15/code
459 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
460 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
461 \cp SIZE.h_50 SIZE.h
462 \cp packages.conf_hr packages.conf
463
464 cd ../build
465 \rm *
466 ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
467 make depend
468 make -j
469
470 cd ..
471 mkdir run
472 cd run
473 \rm *
474 \cp ../input/* .
475 \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
476 qsub job_orion
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