Contents of /MITgcm_contrib/high_res_cube/README_ice

Instructions for setting up a cube-sphere integration with sea-ice.

Forcing fields and other input files needed for the CS510
configuration can be obtained from
http://ecco2.org/products/model_setups/cs510.html

=================
UPDATES

January 5, 2006: cube51, like cube50 but with bottomDragQuadratic = 0.0012

January 5, 2006: cube50, like cube48 but with snow advection

December 30, 2006: updates for cube49, the first
"blend" integration.

December 11, 2006: preparing for cube47, same as cube43
but with Arctic monthly river runoff climatology.

December 5, 2006: 216-CPU code for cube46
Changed diagnostics to accomodate JMCs latest and some
changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h
to speed up code.

November 7, 2006: 216-CPU code for cube43
Bug fixes in growth.F routine and new set of diagnostics

October 15, 2006: 216-CPU code for cube40

September 28, 2006: 216-CPU code for cube38

September 4, 2006
Modified 32*32*6*15 experiments to use grid_cs32.* files from
 verification/tutorial_held_suarez_cs/input instead of
 tile* files from verification/global_ocean.cs32x15/input

August 8, 2006: 216-CPU code and input used for cube37
using "June 10, 2006" MITgcm code.

for online T/S profile diagnostics all that is needed is
  profiles_init_fixed
  profiles_inloop
see pkg/ecco/ecco_cost_init_fixed.F
    pkg/ecco/cost_averagesfields.F

##########################################################################
##########################################################################
# Get forcing files, etc.
# Example below is for cube46 on /nobackup2a/menemenl

cd /nobackup2a/menemenl
mkdir cube47
cd cube47
ln -sf ../run_template .
ln -sf ../ncep_rgau .


##########################################################################
##########################################################################
# getting the code from anonymous CVS server

  bash or sh shell:
    $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
    $ cvs login 
      ( enter the CVS password: "cvsanon" )

  tcsh or csh shell:
    $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
    $ cvs login 
      ( enter the CVS password: "cvsanon" )

cvs co MITgcm_contrib/high_res_cube/README_ice
cvs co MITgcm_contrib/high_res_cube/code-mods
cvs co MITgcm_contrib/high_res_cube/input
cvs co MITgcm_contrib/high_res_cube/results
cvs co MITgcm_code
cvs co MITgcm/verification/global_ocean.cs32x15
cvs co MITgcm/verification/tutorial_held_suarez_cs/input


##########################################################################
##########################################################################
# 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_216 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../code/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
\rm bathy_Hmin50.bin *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
ln -sf ../../../../run_template/pickup.0000000216.cube49 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube48 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
qsub job_altix


##########################################################################
##########################################################################
# 32*32*6*15, 1-cpu cube sphere

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
cd ../build
\rm *
../../../tools/genmake2 -mods=../code
make depend
make
cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
../build/mitgcmuv >& output.txt

comparison output is in:
../../../../MITgcm_contrib/high_res_cube/results/output.txt

to use matlab to look at the output
matlab

for fld={'SIuice','SIvice','SIheff','SIarea','oceQsw', ...
         'surForcT','oceTAUX','oceTAUY','surForcS'}
    tmp=permute(readbin([fld{1} '.0000000072.data'],[32,6,32]),[1 3 2]);
    cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
end

heff=permute(readbin(['SIheff.0000000072.data'],[32,6,32]),[1 3 2]);
mask=0*heff; mask(find(heff>.001))=1;
uice=mask.*permute(readbin(['SIuice.0000000072.data'],[32,6,32]),[1 3 2]);
vice=mask.*permute(readbin(['SIvice.0000000072.data'],[32,6,32]),[1 3 2]);
clf
subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')


##########################################################################
##########################################################################
# 32*32*6*15, 17-tile, 1-cpu cube sphere experiment

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../code_alt/code.176t_8x4/* .
cd ../build
\rm *
../../../tools/genmake2 -mods=../code
make depend
make
cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
../build/mitgcmuv >& output.txt


##########################################################################
##########################################################################
# 32*32*6*15, 2-cpu cube sphere on the altices with ifort

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
\cp SIZE.h_mpi SIZE.h

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
mpirun -np 2 ../build/mitgcmuv


##########################################################################
##########################################################################
# 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
# starting with pickup file from end of 1992
# requires input files in sudirectories run_template and ncep_rgau

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_altix92_54t


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 150-cpu, excludes land
# uses s1500t_17x51 configuration

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_150 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv mitgcmuv150
qsub job_altix150


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 375-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_375 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c20_375cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 375-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_375 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c20_375cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 500-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_500 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c19_500cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 216-cpu cube sphere on cosmos

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_216 SIZE.h
\cp packages.conf_hr packages.conf

module unload latest_intel80
module unload mpich-gm-intel80
module load latest_intel81
module load mpich-gm-intel81

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
bsub < job_cosmos


##########################################################################
##########################################################################
# 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_54 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion


##########################################################################
##########################################################################
# 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
\cp SIZE.h_41 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion41


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_50 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion
1	Instructions for setting up a cube-sphere integration with sea-ice.
2
3	Forcing fields and other input files needed for the CS510
4	configuration can be obtained from
5	http://ecco2.org/products/model_setups/cs510.html
6
7	=================
8	UPDATES
9
10	January 5, 2006: cube51, like cube50 but with bottomDragQuadratic = 0.0012
11
12	January 5, 2006: cube50, like cube48 but with snow advection
13
14	December 30, 2006: updates for cube49, the first
15	"blend" integration.
16
17	December 11, 2006: preparing for cube47, same as cube43
18	but with Arctic monthly river runoff climatology.
19
20	December 5, 2006: 216-CPU code for cube46
21	Changed diagnostics to accomodate JMCs latest and some
22	changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h
23	to speed up code.
24
25	November 7, 2006: 216-CPU code for cube43
26	Bug fixes in growth.F routine and new set of diagnostics
27
28	October 15, 2006: 216-CPU code for cube40
29
30	September 28, 2006: 216-CPU code for cube38
31
32	September 4, 2006
33	Modified 3232615 experiments to use grid_cs32. files from
34	verification/tutorial_held_suarez_cs/input instead of
35	tile* files from verification/global_ocean.cs32x15/input
36
37	August 8, 2006: 216-CPU code and input used for cube37
38	using "June 10, 2006" MITgcm code.
39
40	for online T/S profile diagnostics all that is needed is
41	profiles_init_fixed
42	profiles_inloop
43	see pkg/ecco/ecco_cost_init_fixed.F
44	pkg/ecco/cost_averagesfields.F
45
46	##########################################################################
47	##########################################################################
48	# Get forcing files, etc.
49	# Example below is for cube46 on /nobackup2a/menemenl
50
51	cd /nobackup2a/menemenl
52	mkdir cube47
53	cd cube47
54	ln -sf ../run_template .
55	ln -sf ../ncep_rgau .
56
57
58	##########################################################################
59	##########################################################################
60	# getting the code from anonymous CVS server
61
62	bash or sh shell:
63	$ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
64	$ cvs login
65	( enter the CVS password: "cvsanon" )
66
67	tcsh or csh shell:
68	$ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
69	$ cvs login
70	( enter the CVS password: "cvsanon" )
71
72	cvs co MITgcm_contrib/high_res_cube/README_ice
73	cvs co MITgcm_contrib/high_res_cube/code-mods
74	cvs co MITgcm_contrib/high_res_cube/input
75	cvs co MITgcm_contrib/high_res_cube/results
76	cvs co MITgcm_code
77	cvs co MITgcm/verification/global_ocean.cs32x15
78	cvs co MITgcm/verification/tutorial_held_suarez_cs/input
79
80
81	##########################################################################
82	##########################################################################
83	# 5105106*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
84
85	cd MITgcm/verification/global_ocean.cs32x15/code
86	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
87	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
88	\cp SIZE.h_216 SIZE.h
89	\cp packages.conf_hr packages.conf
90
91	cd ../build
92	\rm *
93	../../../tools/genmake2 -mods=../code -of ../code/linux_ia64_ifort+mpi_altix_nas
94	make depend
95	make -j
96
97	cd ..
98	mkdir run
99	cd run
100	\rm *
101	\cp ../input/* .
102	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
103	ln -sf ../../../../run_template/* .
104	\rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
105	\rm bathy_Hmin50.bin 192_94 cs32 .m lev tren* job_c* job_altix150 job_altix92_54t
106	ln -sf ../../../../run_template/pickup.0000000216.cube49 pickup.0000000216
107	ln -sf ../../../../run_template/pickup_seaice.0000000216.cube48 pickup_seaice.0000000216
108	\cp ../build/mitgcmuv .
109	qsub job_altix
110
111
112	##########################################################################
113	##########################################################################
114	# 32326*15, 1-cpu cube sphere
115
116	cd MITgcm/verification/global_ocean.cs32x15/code
117	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
118	\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
119	cd ../build
120	\rm *
121	../../../tools/genmake2 -mods=../code
122	make depend
123	make
124	cd ..
125	mkdir run
126	cd run
127	\rm *
128	\cp ../../tutorial_held_suarez_cs/input/grid* .
129	\cp ../input/* .
130	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
131	../build/mitgcmuv >& output.txt
132
133	comparison output is in:
134	../../../../MITgcm_contrib/high_res_cube/results/output.txt
135
136	to use matlab to look at the output
137	matlab
138
139	for fld={'SIuice','SIvice','SIheff','SIarea','oceQsw', ...
140	'surForcT','oceTAUX','oceTAUY','surForcS'}
141	tmp=permute(readbin([fld{1} '.0000000072.data'],[32,6,32]),[1 3 2]);
142	cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
143	end
144
145	heff=permute(readbin(['SIheff.0000000072.data'],[32,6,32]),[1 3 2]);
146	mask=0*heff; mask(find(heff>.001))=1;
147	uice=mask.*permute(readbin(['SIuice.0000000072.data'],[32,6,32]),[1 3 2]);
148	vice=mask.*permute(readbin(['SIvice.0000000072.data'],[32,6,32]),[1 3 2]);
149	clf
150	subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
151	subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
152	subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
153	subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
154
155
156	##########################################################################
157	##########################################################################
158	# 32326*15, 17-tile, 1-cpu cube sphere experiment
159
160	cd MITgcm/verification/global_ocean.cs32x15/code
161	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
162	\cp ../code_alt/code.176t_8x4/* .
163	cd ../build
164	\rm *
165	../../../tools/genmake2 -mods=../code
166	make depend
167	make
168	cd ..
169	mkdir run
170	cd run
171	\rm *
172	\cp ../../tutorial_held_suarez_cs/input/grid* .
173	\cp ../input/* .
174	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
175	../build/mitgcmuv >& output.txt
176
177
178	##########################################################################
179	##########################################################################
180	# 32326*15, 2-cpu cube sphere on the altices with ifort
181
182	cd MITgcm/verification/global_ocean.cs32x15/code
183	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
184	\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
185	\cp SIZE.h_mpi SIZE.h
186
187	cd ../build
188	\rm *
189	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
190	make depend
191	make -j
192
193	cd ..
194	mkdir run
195	cd run
196	\rm *
197	\cp ../../tutorial_held_suarez_cs/input/grid* .
198	\cp ../input/* .
199	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
200	mpirun -np 2 ../build/mitgcmuv
201
202
203	##########################################################################
204	##########################################################################
205	# 5105106*50, 54-tile, 54-cpu cube sphere on the altices with efc
206	# starting with pickup file from end of 1992
207	# requires input files in sudirectories run_template and ncep_rgau
208
209	cd MITgcm/verification/global_ocean.cs32x15/code
210	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
211	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
212	\cp packages.conf_hr packages.conf
213
214	cd ../build
215	\rm *
216	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
217	make depend
218	make -j
219
220	cd ..
221	mkdir run
222	cd run
223	\rm *
224	\cp ../input/* .
225	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
226	qsub job_altix92_54t
227
228
229	##########################################################################
230	##########################################################################
231	# 5105106*50, 1500-tile, 150-cpu, excludes land
232	# uses s1500t_17x51 configuration
233
234	cd MITgcm/verification/global_ocean.cs32x15/code
235	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
236	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
237	\cp SIZE.h_150 SIZE.h
238	\cp packages.conf_hr packages.conf
239
240	cd ../build
241	\rm *
242	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
243	make depend
244	make -j
245
246	cd ..
247	mkdir run
248	cd run
249	\rm *
250	\cp ../input/* .
251	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
252	ln -sf ../../../../run_template/* .
253	\rm pickup*
254	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
255	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
256	\cp ../build/mitgcmuv mitgcmuv150
257	qsub job_altix150
258
259
260	##########################################################################
261	##########################################################################
262	# 5105106*50, 1500-tile, 375-cpu, excludes land
263	# uses s1500t_17x51 configuration
264	# example for running on c17-c20 using arrayd
265
266	cd MITgcm/verification/global_ocean.cs32x15/code
267	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
268	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
269	\cp SIZE.h_375 SIZE.h
270	\cp packages.conf_hr packages.conf
271
272	cd ../build
273	\rm *
274	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
275	make depend
276	make -j
277
278	cd ..
279	mkdir run
280	cd run
281	\rm *
282	\cp ../input/* .
283	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
284	ln -sf ../../../../run_template/* .
285	\rm pickup*
286	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
287	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
288	\cp ../build/mitgcmuv .
289	job_c20_375cpu < /dev/null >&! output.run &
290
291
292	##########################################################################
293	##########################################################################
294	# 5105106*50, 1500-tile, 375-cpu, excludes land
295	# uses s1500t_17x51 configuration
296	# example for running on c17-c20 using arrayd
297
298	cd MITgcm/verification/global_ocean.cs32x15/code
299	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
300	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
301	\cp SIZE.h_375 SIZE.h
302	\cp packages.conf_hr packages.conf
303
304	cd ../build
305	\rm *
306	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
307	make depend
308	make -j
309
310	cd ..
311	mkdir run
312	cd run
313	\rm *
314	\cp ../input/* .
315	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
316	ln -sf ../../../../run_template/* .
317	\rm pickup*
318	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
319	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
320	\cp ../build/mitgcmuv .
321	job_c20_375cpu < /dev/null >&! output.run &
322
323
324	##########################################################################
325	##########################################################################
326	# 5105106*50, 1500-tile, 500-cpu, excludes land
327	# uses s1500t_17x51 configuration
328	# example for running on c17-c20 using arrayd
329
330	cd MITgcm/verification/global_ocean.cs32x15/code
331	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
332	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
333	\cp SIZE.h_500 SIZE.h
334	\cp packages.conf_hr packages.conf
335
336	cd ../build
337	\rm *
338	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
339	make depend
340	make -j
341
342	cd ..
343	mkdir run
344	cd run
345	\rm *
346	\cp ../input/* .
347	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
348	ln -sf ../../../../run_template/* .
349	\rm pickup*
350	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
351	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
352	\cp ../build/mitgcmuv .
353	job_c19_500cpu < /dev/null >&! output.run &
354
355
356	##########################################################################
357	##########################################################################
358	# 5105106*50, 216-cpu cube sphere on cosmos
359
360	cd MITgcm/verification/global_ocean.cs32x15/code
361	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
362	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
363	\cp SIZE.h_216 SIZE.h
364	\cp packages.conf_hr packages.conf
365
366	module unload latest_intel80
367	module unload mpich-gm-intel80
368	module load latest_intel81
369	module load mpich-gm-intel81
370
371	cd ../build
372	\rm *
373	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
374	make depend
375	make -j
376
377	cd ..
378	mkdir run
379	cd run
380	\rm *
381	\cp ../input/* .
382	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
383	ln -sf ../../../../run_template/* .
384	\rm pickup*
385	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
386	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
387	\cp ../build/mitgcmuv .
388	bsub < job_cosmos
389
390
391	##########################################################################
392	##########################################################################
393	# 5105106*50, 216-tile, 54-cpu cube sphere on the altices with efc
394	# requires input files in sudirectories run_template and ncep_rgau
395	# presently residing under orion:/tmp1/dmenem/cube
396
397	cd MITgcm/verification/global_ocean.cs32x15/code
398	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
399	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
400	\cp SIZE.h_54 SIZE.h
401	\cp packages.conf_hr packages.conf
402
403	cd ../build
404	\rm *
405	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
406	make depend
407	make -j
408
409	cd ..
410	mkdir run
411	cd run
412	\rm *
413	\cp ../input/* .
414	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
415	qsub job_orion
416
417
418	##########################################################################
419	##########################################################################
420	# 5105106*50, 205-tile, 41-cpu cube sphere on the altices with efc
421	# requires input files in sudirectories run_template and ncep_rgau
422	# presently residing under orion:/tmp1/dmenem/cube
423
424	cd MITgcm/verification/global_ocean.cs32x15/code
425	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
426	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
427	\cp SIZE.h_41 SIZE.h
428	\cp packages.conf_hr packages.conf
429
430	cd ../build
431	\rm *
432	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
433	make depend
434	make -j
435
436	cd ..
437	mkdir run
438	cd run
439	\rm *
440	\cp ../input/* .
441	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
442	qsub job_orion41
443
444
445	##########################################################################
446	##########################################################################
447	# 5105106*50, 1500-tile, 50-cpu cube sphere on the altices with efc
448	# requires input files in sudirectories run_template and ncep_rgau
449	# presently residing under orion:/tmp1/dmenem/cube
450
451	cd MITgcm/verification/global_ocean.cs32x15/code
452	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
453	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
454	\cp SIZE.h_50 SIZE.h
455	\cp packages.conf_hr packages.conf
456
457	cd ../build
458	\rm *
459	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
460	make depend
461	make -j
462
463	cd ..
464	mkdir run
465	cd run
466	\rm *
467	\cp ../input/* .
468	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
469	qsub job_orion